TCONS_00065264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065264
Unique NameTCONS_00065264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065264 ID=TCONS_00065264|Name=TCONS_00065264|organism=Clytia hemisphaerica|type=transcript|length=2272bp
ATTGAAAGAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTATtgt
tttcttacaacaataGATTATTAAAATGGATACAATAAAAACAGAAGAAA
GTTGTTTTGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGGATT
ACTTCAGAAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGAACT
TTCATCACCATCCATCAAAAGGAGAATACCAACTATATTATCTATCATTT
GGTGGAGGGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGGCGA
CATACGATAAGACGAAGACGTACACACTTGATGAACTGATGGAGATGTCA
AACTTGGAACCAGCTGGTCATCATGCTAAACCAAATCACATCAAACGACC
GATGAACTCGTTCATGGTTTGGTCGAGAATGGAACgcaagcgtatcagtg
aagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTGGTGCT
TCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAAGAGGC
CAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAAGTATC
GTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATGTTCGT
AAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATTCCTGA
ATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTGTATT
ACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAGGCCAT
CCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGCCCTCG
AAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGATAGAG
AGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCACCTCCT
CAACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAAACAGAA
TAGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTGACACAA
ACACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCGTCTGGC
GAAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAACGACTGT
AACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGAAATTAC
GAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAAGAGAAG
AATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGAATCTCG
TAACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATACGTCGC
CGCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCCTATATG
GTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGAGATCTG
TTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCACACCACC
CTCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAAACAAGA
TGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTATGTTGT
ATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGGTAGCTG
CCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGGGAGAAG
ACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGACACTGG
AAATGAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTCCATCAA
CAATTTGGTCGCGATAAACTCTCTTTCctttttttgtatatatttacTGC
ATTTGTGTTTTTCCTCATTTACCTTACCACAAAAACcgataattttttcc
tgcttttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACATGATATA
GAAACAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTTAGAATT
CACTATTTGTCTTcgctgtttttgtttttgttttgtttgttcgTACCCAG
TTATTTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTACTTTTT
CTGAAGGGACtatgaatacacgctttttggacctacccctGTGGGGTGGA
GGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAGCTTTTC
TCGAGATTgaatcataggaatcatttgatttttggtacaaaggtgcaaaa
tggtggtggccaaaatgtgacg
Run BLAST on NCBI

transcript from alignment at scaffold_435:347778..356405+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065264 ID=TCONS_00065264|Name=TCONS_00065264|organism=Clytia hemisphaerica|type=transcript|length=8628bp|location=Sequence derived from alignment at scaffold_435:347778..356405+ (Clytia hemisphaerica)
ATTGAAAGAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTATtgt tttcttacaacaataGATTATTAAAATGGATACAATAAAAACAGAAGAAA GTTGTTTTGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGGATT ACTTCAGAAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGAACT TTCATCACCATCCATCAAAAGGAGAATACCAACTATATTATCTATCATTT GGTGGAGGGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGTAAG acatttttgtgtattttttcttttttttaatatgtATAGAAAAGGTTGTA AGAAAAACTTTTCCCCTTTTACTCCTTTTTCCTCccttcttttcttttat aataattatactttttttactttctattttttaattgaattctTAAAATC ACAGAGGAGTCATCTCGTATTGTTTTGACTTGCAATAGAACCTTTTGTCT TTCCTCTATTCAACTAGCCCCTTTCTACTGTCAAAGAAATGTTATTTCTG AATACAAAACTGAACAAAAAAATGAGACTTTTTAGAATGAATAAAGTATA TTTTTGGTGTGCGTTGGTTGAGTTGTGTACTGTAAATGATATCTTTCTct cctttctttttttatatattttgttatgttttgaaGAGAAACCTCAGTAC AAACTAGTTACTTAAATCAACCTCTATTGACCTTATCTATTGTTATTCCA TCTCGTAGTGTTGTTCAAAGGCTTTCCCAACACAAAAAAACTCGAAACGA ATCTCTTTCTTTCTCTCTGAACCGTTTTATGTATTATATGGCAACATTTG ATCACAGGGACTATTgtcttttgttgatttttgaagtATAAGCAGCTCTA TTATGATAATATTTGTTCTCAGATACAAAAAGATGTTATTATATGCAATG CATTTTATACTTTGATGAGTTCTTGActgctttttttaatttttgttgca TATCGTTCGGTTGATATAGTATATTTGTATTAAATTGTCTGGACAAGTTC ACCTTTGGTTGTCTTTCTTGTAAGaactcttcatttttcatctttatttt ctatGCCTTACTGGTAGAATCTCCACTATTTAAACTCGTTGTCTTACTTC CATATGCTCCTTATTCGTGTACTACCCATAATATCAGACTTGTCCCTCGT TTCACTCGACACATGTTTTTATATATACGATATAGACACTTCTTCTTCTT AAGTACTTGGATGTTTAAATTATTTGGAATAGCTTCAATTAAACTTTCGG TTTGTGTTGACGGACTATAGTTTCAGTGCTCAAAGTTAAGCTCTGAACAT TGCAGTATATTAGCAACGGAGCTGTTTGGAGCTTAGCGAATAAGATGTTC GTCGGTTACCTAATTAATTATCAAACAGGAAGTAGAGTGTGGAGAGAGGG GAGGGGGAGAAAAGTTCATTCTGTTACAGATTAATATCTAATGTTTTGTA GCTAGTTAATCCTCTTGCCACCTGTCGATCTCATACCTCTAGTCGTTGAT CATTTACCAACATTCAACGGTATAAAAACAGTATTTTTTAAGAGGGTCGT TTTCTTATTATCtgatgaaaaaaagagaaaatcactTTTGACAGATTGAA AATNTCCTTCATACGTCGCGTATGGTGACTGTTGTTTGTTTTACtggatt gaaatattttttacacgAAAAGCAacgtttttggctgttaaataaTAATG TATTTGCATCATGACtgtagaaatttattttttattatttttctctaCGC AACAATGAAAAgtctttttaaataatttgactGACATACTCCTCCCcctt tttgtaaaatgttgttaAATTAAAATGTACAGATAGGTGCCACTACAAAA GAATTACAATATTCAATTatatttaatcattttttattgaattttaccTG AAATTATTTGGCACGCGAGGCTGTTGGGTATTATTTTCTATCATTCAATG GGGATTTAGGAAGTCAGGCTCTTCTTTACCCTAGGTACCTTTTCTATtgg tgttttttcttttcttttctcttgaCGTCGAAAACAATATGTTAAATGAT TTCTCATTCTAAAGAGTTTGCTATCATAATATTTTCATCAAAGCATTCAA ACAAAACTCGTCTTCTCATTGAATTATTCTGAATAGTCCTTTTGGCAGCT TAGCTTTTCtgctcttttttcttcttcaattttttttttgaatagaaaAG AAAGGGTTTGGgtataagtagagaacaaacaCAATAGGTTATAAACTatt ctttctttctttgattcGATTATTAATTtgaatgaagaaattttcatctt tatttttttcatagctGACATTTTAAATGAATGCGAACACCGGCAATCAA AGTATTGAAAGAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTAT tgttttcttacaacaataGATTATTAAAATGGATACAATAAAAACAGAAG AAAGTTGTTTTGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGG ATTACTTCAGAAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGA ACTTTCATCATCATCCATCAAAAGGAGAATACCAACTATCTTATCTATCA TTTGGTGGAAGGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGT AAGacatttttatgtattttttcttttttttaatatgtATAGAAAAGGTT GTAAGAAAAACTTTTCCCCTTTTATNCCAACATTCAACGGTATAAAAACA GTATTTTTTAAGAGGGTCGTTTTCTTATTATCtgatgaaaaaaagagaaa atcactTTTGACAGATTGAAAATTAGTGAAAGGatccttctttttttttt cattttatttaaatGGGAAGAAAAAATAGCTTCTTTTGTTATGCTTACGA TTCGCAAAACGTCCTCTATTCTTTTGTCTTCTATATGTTTTCTTAAACCA TTGGCTATTATATTCCATTTTTCTTGTGCtgtttttataataataacTCT GAGGTTAATAAATACTTATCGAGCAACAATAGAAAagactcaattttctt tttaaatccaAACTCTGTATTATGCTATTATTTACCTTTGTGTTTTGTTC TCTATTGTTTATCAATGACTAAGATTTATGTTGGATTTATAacaactttc ttttcttttcacaaaaaaacctCGTTATTACAAGCTGTGTGTGTAGTGTT GAGTTGAGGAGAGGAGTCGTCGAATATACGAAGCGACGAGAAAAATTTTG GATGGAAAAAAAGAATTCATTTCTCATAAATGATAAGAAGTTGATTGACc taaacacaaaaaaataactttcagaAATGTAAgcagatcttttttttttt gttttcttttctctgATAAAAAAGTCTTTCCTTTTGATACAACAATATTG AAGTTACTTCCTCTTACTTAAGCTCAACTGAAATTTTCTTCTAGATACTT TAATATTAGTTACCCTTCTAACCTGAATTTCCTACAGATATTTTCTCGCA CAAATTCCGCTGACTTGTTCTCTAGATCCAAGTTAATCTTAATTTTAATC ACAAGGAGAACATTTTATTTAGTCCCCTTGTCATTGAGAAGTATATCATC CTCCCATCATCCCATGGATAGGAAAGCTATGATAGAATTAACTGTTTAAG TCTCGTGAAACTATTAAGTTTAAAACTAAAATGAAACTCACTTTTTAACC TCTGACCATAACCACTAATTACCTTGAAAGCCTATAATTaaatctgtaaa atacaacCTCAGACGGTCAGAGAGAGACGAGAGAGATACATAACAAAACC CTCAAAGTTTCTTTCTGGTGACCTGGAAGTGTTGTTCCAATGTTGTGGCT ATGATTTCCACtcaaattatcaattttacTTATAAGAATAGATCATTATC AAAAGTTTAGCTTTTAAAAGCTCTTCCTGttcaaaattattcttataaaa aactgatATTTTATTAATACCTGACACTCGGTAACTAATTACTTGTTCCC TCATTGTCTTACCATTCGCGATTTGTTATAAGATTAGAAACCGTTTCTCA GGCTCCTTAAATTAAGACTAAATTCTGATCGTAATAAATGTAATGCTGCC ATGTTGAGTGAAAAGATCGGTTGGAAAAGTATCGCTCTAAACTTTTTTTA TCGTCGAAATACGTATCTATCGTATTTCCAAGCTTtccaaagtagtattt cttatgaaaaatacaTTGTCAACACATTAAAAATGTATCAATTGATATTG CTCGACTGAACTTAGCAGCAGCCGTTTTTCAAATTACTGATGAATGCTCT TTCGTTGCCTACccttttgactttttaaagagGTTGCACAAAAGCTCTGA TTTCTTATATAAAACCTTTACGAGTCAATCTTAAGTGAATCAATGGTTTT TTGTTCGTCAatagaaacaaatttttatgatGTTGCTTGACAAAAGGTTg cttttacctttttttatcCTAGCTTGTAAAAGAAACTAAATATTCTGTTG TAGAGATGAAATGATTTATAACGGTAGAACTTCTTGTAAAACCATTCATT TCTTTTCTCTTTAGTTCTTCAGTGTTCTTCATATGAATGGTTTTATGAAG ATGTCGACTGTTGTGAATCATGCTTATCCTAAACacagtttttgtttttc ttagcATAGAATAAAGCGAGGCGATTATGATTCAACATTAAAGTTAAATA CAATGAAATGAGAAAGTTGTGGATTTATACTCTACTggttcatcaaagtc actcaaTAAGAAAGATCGAGTGGTGTTTTCATTAGAGTGAAATCTCTCCT ATATTTATTGTTTGTGCACGCTTATAACAAAATCTGTTATAGGGATGCGT ATGCAGCCTATGTATAATTTGACTTCTTTCTATCATTGAACACCGTTCCG CTCTTTCTCATCCTTCAGGGCGACATACGATAAGACGAAGACGTACACAC TTGATGAACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCT AAACCAAATCACATCAAACGACCGATGAACTCGTTCATGGTAAGAAGCAG ATTCATATCCCTCGGATgttgttaacttttttttagttttaagccttaaa atgttcttaacatgctcttgTTATCGCCGTTTTGTGAGCACTTTTGTtca tttccctaagaaatcgggtcTTATAGGGTCtgcaaaagccttaaaatgtt cttaactggTTCTTAGTAtattggccatcgaagccttatgttcttataaa aaatggcTATATCATTGAGAGGATAATCGAAATGTTTTGCCATTAATGAA ATGGGGGTGTACTTACGCAAAATGGGAGTTGGTTATGTGCGAGGTGTAAG GGTCTTGAAAGACTCTCGCAGAggtttaaaaagcaatttagtcTAATAAG GTTCCAAGATTACGATACGCTCGGACATAACCGTCTCCTCAAAAACACAA CTTCTTCAAGGAGttcaatattttacaaatacatTACTTATTTCTAGCAT ATCTTTAAGTTTTCTACTAAGAGCTTTTACAACTCAATTGGATTGGATTC TCACACTAGATAAATAGCACTTTAATTTAGGATAAATCTTTCTTCCATTC AAACTTTCTTAAGCTTGAAAAACAAGAGCTGCAAAGGTTTCGAGCTGTAG atgttttcagaaaatgaatATTTCTCTTCTATTCAAACAGGTTTGGTCGA GAATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCACAATTCA GAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGA ACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCC AAGAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCT GTCCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAA AACAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCAC GTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACAT CCTGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCG TGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAA GAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTT TATCGATCATATAGCCCACCTCCTCAACCTAGGNTAACTGGTTCTTAGTA tattggccatcgaagccttatgttcttataaaaaatggcTATATCATTGA GAGGATAATCGAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGC AAAATGGGAGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCG CAGAggtttaaaaagcaatttagtcTAATAAGGTTCCAAGATTACGATAC GCTCGGACATAACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGtttaa tattttacaaatacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACT AAGAGCTTTTACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGC ACTTTAATTTAAGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGA AAAACAAGAGCTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaa tATTTCTCTTCTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgta tcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTT GGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGA AGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATA AGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCAT GTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTAT TCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTG TGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAA GGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCG CCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTG ATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCA CCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAA ACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTG ACACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCG TCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAAC GACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGA AATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAA GAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGA ATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATA CGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCC TATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGA GATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCAC ACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAA ACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTA TGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGG TAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGG GAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGA CACTGGAAATGAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTC CATCAACAATTTGGTCGCGATAAACTCTCTTTCctttttttgtatatatt tacTGCATTTGTGTTTTTCCTCATTTACCTTACCACAAAAACcgataatt ttttcctgcttttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACAT GATATAGAAACAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTT AGAATTCACTATTTGTCTTcgctgtttttgtttttgttttgtttgttcgT ACCCAGTTATTTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTA CTTTTTCTGAAGGGACtatgaatacacgctttttggacctacccctGTGG GGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAG CTTTTCTCGAGATTgaatcataggaatcatttgatttttggtacaaaggt gcaaaatggtggtggccaaaatgtgacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040922XLOC_040922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065264-exon-scaffold_435-1491911889:347778..348072TCONS_00065264-exon-scaffold_435-1491911889:347778..348072Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1510915933:347778..348072TCONS_00065264-exon-scaffold_435-1510915933:347778..348072Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1575043694:347778..348072TCONS_00065264-exon-scaffold_435-1575043694:347778..348072Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1491911889:352746..352866TCONS_00065264-exon-scaffold_435-1491911889:352746..352866Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1510915933:352746..352866TCONS_00065264-exon-scaffold_435-1510915933:352746..352866Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1575043694:352746..352866TCONS_00065264-exon-scaffold_435-1575043694:352746..352866Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1491911889:354550..356405TCONS_00065264-exon-scaffold_435-1491911889:354550..356405Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1510915933:354550..356405TCONS_00065264-exon-scaffold_435-1510915933:354550..356405Clytia hemisphaericaexon
TCONS_00065264-exon-scaffold_435-1575043694:354550..356405TCONS_00065264-exon-scaffold_435-1575043694:354550..356405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:347778..356405 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.936085 2.07139 1.45441 1.04861 1.22088 1.94984e-07 2.7866 3.1832 1.84186 2.57497 1.55824 0.887842 3.48066 4.61888 1.89883 3.76742 2.59845 3.4263 4.11264 2.14079 2.44006 1.87797 1.03504 3.37005 0.236166 4.79974 2.58702 0.662603 1.84549 1.05049
Blast
BLAST of TCONS_00065264 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.543e-34
Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  384 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 620
            +HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR  H++EHP+YKYRPRRKPK
Sbjct:    6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84          
The following BLAST results are available for this feature:
BLAST of TCONS_00065264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX145.543e-3470.89Transcription factor SOX-14 OS=Homo sapiens GN=SOX... [more]
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