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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065260 ID=TCONS_00065260|Name=TCONS_00065260|organism=Clytia hemisphaerica|type=transcript|length=3671bpRun BLAST on NCBI protein sequence of TCONS_00065260-protein >TCONS_00065260-protein ID=TCONS_00065260-protein|Name=TCONS_00065260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=863bp MAFFEGSEYGKGDFVLLDQITMDEFMSNLKLRFEKDKIYTYIGEVVVSVNRun BLAST on NCBI transcript from alignment at scaffold_435:177385..193870+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065260 ID=TCONS_00065260|Name=TCONS_00065260|organism=Clytia hemisphaerica|type=transcript|length=16486bp|location=Sequence derived from alignment at scaffold_435:177385..193870+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:177385..193870+ >TCONS_00065260 ID=TCONS_00065260|Name=TCONS_00065260|organism=Clytia hemisphaerica|type=CDS|length=44064bp|location=Sequence derived from alignment at scaffold_435:177385..193870+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065260 vs. Swiss-Prot (Human)
Match: MYO1D (Unconventional myosin-Id OS=Homo sapiens GN=MYO1D PE=1 SV=2) HSP 1 Score: 951.814 bits (2459), Expect = 0.000e+0 Identity = 478/832 (57.45%), Postives = 623/832 (74.88%), Query Frame = 3
Query: 561 MAFFEGSEYGKGDFVLLDQITMDEFMSNLKLRFEKDKIYTYIGEVVVSVNPYKTMDIYGKEVISEYKGREIFERPPHIFALADAAYKTMKRKNQDSCIVISGESGAGKTEASKIIMKYIAAVTNPNKLSEVESVKDILIQSNVILEAFGNAKTNRNDNSSRFGKYMDIDFDFKGDPIGGHINNYLLEKARVVHQQIGERNFHSFYMLVKGASQDELSKYHLQPRPNDYFYLRQGRCNDVDSLDDKKGFSAVNNALKASKFSAEEIEIIWKLVSSIILLGNLTFNQEGDQAIITDSEALSNISDCLGVSKKDCDKALCYRVVAARGEVIEKGHNKDDAIYGKNAFAKAIYDRLFTWIVNKINSAIDPK-HSSQRHVGNKVIGVLDIYGFEIFDENSFEQLCINYCNEKLQQLFIELVLKQEQEEYRRENIEWTQIDYFNNKIICDLIDQQHKGIIAILDEACLNVGKVTDKMFLHAMDQKLGTHNHYKSRQTEPSNKDLTHNQDFQIQHYAGDVKYSAMNFLDKNKDNLFQDFKRLLYNSSHQMLKDQWPEGGQDITKVTKRPQTTATIFKNSMISLVDNLMKKIPYYVRCIKPNALKSPSKFDEDLIAHQVRYLGLIENVRVRRAGFAFRQIYSRFLQRYKITCPATWPVYD-KDLKDGCNLIIREFHFEGDVKFGNTKIFIKSPKTIFSLEEERTKKLPMIVLKMQKTWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHGDAKNQPRFGKNLPWPKIGVWPRALVDLDPILRSLFGRWRGNMMLRSVPRDQWGEVRVKSAAIEGLQKQKPQYGLNRRWYGDYL 3050
MA E E+GK DFVL+D ++M EFM+NL+LRFEK +IYT+IGEVVVSVNPYK ++IYG++ I +YKGRE++ERPPH+FA+ADAAYK MKR+++D+CIVISGESGAGKTEASK IM+YIAA+TNP++ +EVE VK++L++SN +LEAFGNAKTNRNDNSSRFGKYMDI+FDFKGDPIGGHINNYLLEK+RV+ QQ GER+FHSFY L++G S+ L HLQ + Y Y+ G S++D F V +A+K F EEI+ ++K++++I+ LGNL F +GD +I + + +S I++ L +KAL YR VA ++I+K H + +A YG++AFAKAIY+RLF WIV +IN I+ K + + H N VIGVLDIYGFEIFD NSFEQ CINYCNEKLQQLFI+LVLKQEQEEY+RE I W IDYFNN+II DL++QQHKGIIAILD+AC+NVGKVTD+MFL A++ KLG H H+ SR+ S+K L ++DF+I+HYAGDV YS + F+DKNKD LFQDFKRL+YNSS+ +LK+ WPEG IT+VTKRP T AT+FKNSMI+LVDNL K PYYVRCIKPN KSP FD++ HQV YLGL+ENVRVRRAGFAFRQ Y +FL RYK+ TWP +D K+ +I F+ DV +G TKIFI++P+T+F+LEE R + L IVL +QK WRG +R+ +R +AAL ++R +RR++V+ Y+ E+ K +GK++ WP P+ L + L+++F RWR + +++S+P +VR K AA+E L+ Q+ GL R W G+YL
Sbjct: 1 MAEQESLEFGKADFVLMDTVSMPEFMANLRLRFEKGRIYTFIGEVVVSVNPYKLLNIYGRDTIEQYKGRELYERPPHLFAIADAAYKAMKRRSKDTCIVISGESGAGKTEASKYIMQYIAAITNPSQRAEVERVKNMLLKSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVIVQQPGERSFHSFYQLLQGGSEQMLRSLHLQKSLSSYNYIHVG-AQLKSSINDAAEFRVVADAMKVIGFKPEEIQTVYKILAAILHLGNLKFVVDGDTPLIENGKVVSIIAELLSTKTDMVEKALLYRTVATGRDIIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTIHGKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIVDLVEQQHKGIIAILDDACMNVGKVTDEMFLEALNSKLGKHAHFSSRKLCASDKILEFDRDFRIRHYAGDVVYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEGKLSITEVTKRPLTAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVRRAGFAFRQTYEKFLHRYKMISEFTWPNHDLPSDKEAVKKLIERCGFQDDVAYGKTKIFIRTPRTLFTLEELRAQMLIRIVLFLQKVWRGTLARMRYKRTKAALTIIRYYRRYKVKSYIHEVARRFHGVKTMRDYGKHVKWPSP---PKVLRRFEEALQTIFNRWRASQLIKSIPASDLPQVRAKVAAVEMLKGQRADLGLQRAWEGNYL 828 The following BLAST results are available for this feature:
BLAST of TCONS_00065260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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