TCONS_00065257 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065257
Unique Name	TCONS_00065257
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1124

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_435:132223..140662+

transcript sequence

>TCONS_00065257 ID=TCONS_00065257|Name=TCONS_00065257|organism=Clytia hemisphaerica|type=transcript|length=1124bp
TGACAGTAAAATTGTAATTTTGAGTTACTTTCTGAGATTCATTAATTTAA
AGTTAGATGGCTCCTCCCAAATCAAGGAAGCTGGCTGTTATGGGCTTTCG
GTCTGTTGGCAAATCATCTTTGTGCATTCAGTTTGTCGAGGGCCAATTTG
TTGACTCATACGATCCAACCATCGAAAACAcatttaattcaaaaatcaaa
cacAGAGGTCATGAATTTCATATTGAATTAGTGGATACTGCTGGACAAGA
TGAGTACTCAATCATCCCGCAATCATATGTTGTTGATAATCATGGTTATA
TTCTCGTTTATTCCGTCACCTCTaagaaaagttttgaagtTGTCAAAGAT
ATAAGAGACAGACTACTTGATCTAAGTGGAGTTGAAACAATTCCCATCCT
GCTTGTTGGAAACAAAACAGATTTACACATGGAAAGGGTAATTTCTCCTG
AAGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTGAATCA
TCTGCTAAAGAAAATAAGGCTGTCCTTGGTGTTTTTCATGCAATGCTTGA
TGTTATTTCCAAACAAGAAAATGGTGGTCAAAAATCTGATGGATCTGGTG
GTTGTTCAATTTCATAATCTTTCTATGTGTTGCTACTGCTACTGTTGTTT
GTATGTTACCCTTTTTCATCATTGTAGTTGCCTGCCTGTTGTGCAGGAAT
TATTGATGGTAGTTCGAGGTGATATCATTTCGAGGAAATATCATTTCGAT
GAAATATCCTTACTATTTTTCTCTCTGCTTTTTGTAGTGTTTGTTGTTGA
ATAGTTCTGTCCAATTTTTATAGAAATAAATCACTGCACAATAGATTAGA
caaggaaaactttttttgctggATTTGGTGTAGACTACGTAACACTTTCA
GAGATTGTaaatactttatattttttattatttcattagAACTAAGTAGA
GCTACATTCATTTTATTCATAATTACTTAACAACAGGCACGTAATCATTA
TTTTTCTCAGATTATGTGTAAATATTTTAGCAAAACGAAAAGTTTTCGCT
CTAGGCAGGCTATCAGCTAGTTTGGGTCATGTAAATGCCCTATATTGAAG
TTGGAGTTTGGTTATATGATTAAG

Run BLAST on NCBI

transcript from alignment at scaffold_435:132223..140662+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065257 ID=TCONS_00065257|Name=TCONS_00065257|organism=Clytia hemisphaerica|type=transcript|length=8440bp|location=Sequence derived from alignment at scaffold_435:132223..140662+ (Clytia hemisphaerica)
TGACAGTAAAATTGTAATTTTGAGTTACTTTCTGAGGTATTTGTCGTTAT
TGAGGCCAACGCTACTGGCTTAGCTTCTTCTAGAGTTGATCCCTGTGCAA
GTATTGCTCCTGAGGCCTGTTTTGTGTCCATCGTATCAACAATAATGATG
AAGGTATTTGCGTTTTGGTCAAAATAATAAGgcaattcatggataaaatg
taCTCCCAAAATGCTTCTATAAAGGAATAAAAAGTGTTGTTGTGCCCATT
TTCCCATTTGAATCGTTTACCTTTCTTTGTTTATAGCTCCCCGCAAGGGT
TGAGCCAGTTAGAGTTAGGGCCTCCTTGGTCAGTTGGTCTTTTTTtggtt
atgtaggttttaaaatccacaagtaatgaacctcttatagctttacctga
ataaatctggttgaaaaccttctgtcaggtttcattccaactggtttccc
cgatttcccgataattaaaaattggaactttcccagggcggtcatcgaaa
aattgttctattagGGAGAGGTCGGGCCTTACGCTtgcggcagtaacaaa
acatagtttagcttttgagaTGTATATACCACGTTCGTTGGTTGGAGCaa
cgtatatttttcaggaagtcaaattatgtaacttaaaatgcgtttttttc
attgaaaaaatcaaatttttttattNtttcattgaaaaaatcaaattttt
ttatcgaacgtgaattttttacaaagaacaatgttttttctttccaaatg
tgaaaaaagtaagaatcaagctgtttccggtggcaagcgctaagggaaag
attatggtgtaattaccccagtttcagctacatctacagaaaataaaact
cgcaccAAACAAACCTCCAGCgcggaatttttcataaaacactttcgctt
ttggtgccgtaatgaaggtacaaaatggctggcgatgcgtgaccaaaaat
tgaacttcaaaatgTAATATATTAGGAACTTtaaagaatagaccttttcg
cctttgcgtccgccatattgaattgtatgcaaaaattatggttgccgaat
tgccgtggtgaaattcccttagaaagtatgcaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaactaaaaacaattatattcactcatctcttagaacaagcact
tcaaaagaccataacattagacagaatctcaaactgaaaaatcacccgcg
aaggtaaaataacaatccttattcggctgacggcaaattattctcctggg
aatagagccgccaaatgatcaagtcaaaacattgataaccaaccaaccac
ggcattttcgttcctgtatttttgcatacaattcaatatggcggacgcaa
aggcaaaaaggtctattggaaggtaaatgacccctcatgtttcttctgat
ggttatggctttccattaatcttggtttggtattctgcaagtatgtttga
aatttcctctgaccaccctagttctattcgcgtcaccggcccgcatcaaa
ttttccgttgattttccggtgcggagatgcggaaaaaaatctgggaaaag
caatttgttcttttaaagtatatatatagcttttttctcaattgctctga
cgaccatcgaaaaattgttttgctcgcgttaccacccgcccctgagttac
tggcgtgattaaaaaaaactcgggaatgtttttgaccgcccgtccgcccg
cataCATTTTTAATACCCGTTGCGACACGAACAGACCATTTTTTCAATAA
CCGCCTACTGTAGTGGGCGCgaatcgcgaaatattttttgtgaaaactta
ccgtattctaacgctgatataatctagatagaaaacaaatattgaatttg
attcttttttgttcgtatttctaaatttcacgattaaaagaactatttac
aaattattttcctaacgggcgttgaatcaacattgacatatttaatgatg
tcataatcaatgccgtgcatattttcagggctcgaaataacggtcggaca
tcggacattgtccgacccaattgctgAAATATCCGACCCAAATCGGTTct
agtcggacatcatgtccgacccaattacTTTCAGTGCCatcaaaaaattt
gtcagatgcgttgtgaaatttccaaaagaaattatagtttacatagaatt
agtaacttctttatttacacacaaaaactctcaaagttgcgatcattagt
gttagatattcattttgtgtgatgctttttctcaacaaatgaaaGCATGC
TTAATGTAAAAATCATGGGCTTCCAACCATTAATTATTGgcatttgttta
gcttcttcgtgatcaatgttaaattctatcagaagcttgtattagacttg
aagtataccccacataaaaatcaatcggacatgtccgacctATTTTACTT
AAAGCCTTataggacatgtccgacccaaatcaatttttgatcggacaatg
tgtccgaccacctaaatatcgttatttcgagccctgtattttgtcaacat
tcttttcattggaaaaataccactaaaatatacaagagaaGTAAACATAT
ATTTATTGCCCGagagctaagcgcacctctcttattcattatctaagaat
tggaaCAAGCAAAGATTAACGCGCANCgagagcacggcttagctaagcgc
acctctcttattcattatctaagaattggaaCAGGCAAAGATTAACGCGC
Aggctgatagcggacaaaggttatttgaagatattttcagttataatcca
aggtagaacaaactaaacatagaaagaaGGTATTTTTTAATGCTCTATAT
ATACGATGAtcagtatttttttttattctatgtttagatttttctaccca
gccccgttgctatgtacgcgcgccctgttgctaagatctTTGCGTGAAAT
AgaaagtgaaaccaaaataatttagcgcacactgctgTTCGCGTacaata
tcgataaagtgaaagaaGGTCCTGACTGGGTTGAGCAGTTGAGGCTTTCT
TGGAGAAACCTTTAATGAAATCAGAATTGCTCTGCTGTGCAATTGCTGGA
tcgaaaaaggattattcctctctgaccaatgagtaaagaaaatagttttg
accttttctatgaatttcagctgataaacagtgaggctggaacttcgatt
ttttgaggattacgattttacctgctttttagcaatttttgcctcgctaa
cccaaatatcgcaacctctttaccttaaggaagatcgaaattagagtttt
tcagcgttccgaaaaaaacgcatagctgaaattttttcatcttcacagga
tcaattctcaacaacaaaatacatcttttggtctttgggtttgtttctga
cgtttttccttcaaagaatatcgatcacttttcttttccccTTGAttgcg
cgagaaaaaaatgattagcttgcGCTCtcgtgcgggcgaataaagatgag
gcagcAAAcctgcactgagggtgctacttagtttccgccctattttgcgc
ccacgatagaatggtccaaatacgggggtattccaaatgataaacgatgt
cgttctgtaagtgtttattttctgagagatacaaatagtatattgaatat
tattaacttatttatttaagtatttttcagcgcaaattcaaatatcttgt
taaataaaaaataaatgatagcaattctgtttttcctcaaacccccgaga
aaagtttttttgctgactcagctattttacaaatttctgaaaagaactcc
cataggaattccgatacataacccaattggttaatttcggaacggcttca
agaaagtcataatggcagataattttaaaagtttctgaggaaatgtgtgt
ataaatctatcgatgttgatggcttgttgattatttaaagaaaaaagata
acaggtatagctttttctaatcctggaatatcgaggttccagctacactg
ataaagagggtgtcggaattagaagagggatgtcgacattagagtGTGGG
TCGAATCCTTAAGATCCTTGGTTTATAGAAAAAGCTATatctgtttactt
ttttcttgccagattcaacaagccatcaaccaacaaaattaatactgaca
tcaaaaaatttacacGACCTTTCCACAagacacttctaaattatctgcca
ttatgaagatgttccgaaatcaaccaatcgggtttacaaaaaagggtgtc
ggaattggaggaggggtgtcgacattagaccaagttacttACTAGTTtta
cccccactttttaaacaACGTCTTCTGTGGGCGTGATATCAGGCGGAGAC
AAAATGCTTTCATCGTAAAATTCTCTGGTCgtcttattgtttgttccttt
tgtcAAGTCTGTTGGTCCTATTGTTCATACTAAATCCATACACAATGACA
TCAGTGAGTGGCGACATATATacctgaaaaacaaaaagattattattatt
tttgcatgaattaTGCTACCTTATactttattatataaaaaattatacaa
aacgaaaGCGAGTCTAGGCCATCTGCCTAGAGAGCGCAAgttctaatatt
ttttctcttgcCGCCTTCAGGGGAAAACGAAactgatcgatattctttga
aggaagaaCTTGCAAAAAAAAACCGTAGACAAAAAGATGTCTTTAGAGGT
TTGGAAtggatcctgtgaagatgaaaaaattttgactaggCGTATTTTTG
GCAAACCCAAAAACtcttattttttcttccctcaagctaaaaagATTTCG
GGTTTTGGGCAATCAAGGCAAAAGTCAGCAAAAAGCTGATGTTTTCCGTA
AATCCGAGAATCGTGATAAGATCCTCACTGCCAAATAAAAATTGCCAACT
TTCCAAACTCCAAACCTCAAACCAGTGATAATCACAAAAATTCACCACCA
ACCAAGTTACAAGAAGGATCTACCGCAATTAAAACTAAATCTATTCTCGA
ACGCACCAGTCTTCCATCACCAAAAAGAACCATATATACATGAACAGTCT
CCTAATATAATTAAAGACATTAAAGTCATTTTattacatgtttaaattcg
aaaagctatgacaagggtttaaaaaagcatgaaatttcatgaaaaaagca
atttagaattgacttatttatctttttaaatctgataaaaacaaagttgc
actattctttgtgactttccagctttttcctgaagaattgtcatttctgc
atttcactcctctttaccatgatattttctcaaattgtcgaaaactggac
agcgtatttaatgcgagcgaagcgagaaaggAGATCTTAGAGagttagag
tcaaactttgaagatatctttttattcatttgattgttttttaagccacc
ttcaacatccaaaggactttgagtgcgttcagctacagctttaaccggcg
tgcgacgccgggtaccggctagtttgtGTCCATTTGTATaacaaatttga
ttggttaaaataaaagaaatgttgCAAATAATCTTCTTGAGGCAAGGGGA
CACAAGGGTTTTTGTATAACTCTCAATTGcaacatgaaaattttgttgct
GCAACAAAAACATCTAGCGGAAAATGTTGCAAAATAGCAATATCTGATGA
ATGAAACATATCCATGCgattgaaacaaattttttttttgaacatAAACA
TATATAAACAAAGGACCAATAACGATGTTTTATCAATTTCGTAAATTCAG
ATTCATTAATTTAAAGTTAGATGGCTCCTCCCAAATCAAGGAAGCTGGCT
GTTATGGGCTTTCGGTCTGTTGGTAAGCCTTTTCATGAATTTCGTTTACG
TCCATATAAAATGAGTTTTTAGAATAATAGTCAAATTTTGTTTGTAGCTT
CAATAATGGGAGTTATTATTCAAAAGTTAAGCAAGCTTTTAAACCTCTTT
GTTGTGTCACCCATTGTTGATGAcataaaacaaaattatttcaaatgttt
tcattcatttcttcAGGCAAATCATCTTTGTGCATTCAGTTTGTCGAGGG
CCAATTTGTTGACTCATACGATCCAACCATCGAAAACAGTAAGAAAGTTT
ATCAAAAAGGATACATTCATTAACAGCCCCTTCAAAAGTACTTAGTTGTA
AGGATGCTAAACTATTTAATACCATTTTTTACTTTAGATCATGATATCAA
gactttttttggcaaaactgcATTGTGTATAGTCTACTATATGAATCATG
TCAAATTtgataactttaaaaaaaaaagatctgtTTGATAAGCTTATTTT
GAGTAACATATTGTTTGTTACATAGcatttaattcaaaaatcaaacacAG
AGGTCATGAATTTCATATTGAATTAGTGGATACTGCTGGACAAGTAAGTG
GAATTTCATAGATATTATTATGTTCATAACCaagtttttcaattattttt
aagagTTGTGTATCAAGCTAGGATTTGTCATTCTGCAAACTGTATCATCT
GTTGTCAAATAATGACCAGAAAGACTAAATACATAATTATGTGTTCCATT
TCTTTAGGATGAGTACTCAATCATCCCGCAATCATATGTTGTTGATAATC
ATGGTTATATTCTCGTTTATTCCGTCACCTCTaagaaaaggtttttttat
tgattttaattgTATGTATTATAAGTCTTTAGTCTTCACTATCCAGAGTA
TTTATAATAATATTATCCCCTTCATTATTTATAGATAATCTTTCTAATAA
CAACAATGCCAACataaacattttctcaaatgaatttttaaaatgaagca
cagccgaaaaaaatttaaaagataaaaagcTGTGCATTTCTAGTACCTTT
CATTTTGATTTGTGttttccataatttttttttcccatCAAATTttatcg
ttgtttttttttcagttttgaagtTGTCAAAGATATAAGAGACAGACTAC
TTGATCTAAGTGGAGTTGAAACGTAAGTTCTCAAAGTCCATACacatatt
tttgttatttttcaattattaCAAAACATCACGGAGATGGCCTATGTTCA
ACTGAACTGTCCCTCTTGAAATGGTGAGTTTTATTTTGATCTGTCTTAAC
TGGTTTTGATACTTTTACTTCATTATTGAATTTCATGTCGCTTTCTCCTT
TTAGAATTCCCATCCTGCTTGTTGGAAACAAAACAGATTTACACATGGAA
AGGTTTGTCAAAAGCTAAGAAAGAATCAAGTAAACATTTGAAGTTTGACT
AAGCATTTGACTTATCTTGTCTAGTGTGTATTTGAAAAATCATTATAATC
AATTTTATCTCTTACGATGAGTTCATGATTTCATTGCAATTTTGATTATC
ATAAATTGTTTTTAGGGTAATTTCTCCTGAAGAGGGAAGCAGTTTGGCTA
AAAAATGGAAAGCAGGCTTTCTTGAATCATCTGCTAAAGAAAATAAGGTC
AGTATAACTTTGCTTGATGTAAATCTAAAGGCTGTGATCAAATCGCTGCT
ATTAAAACAACTTGAttcattgcaaaaaaaatttggtacATTATAAGTAG
TGTAGATTATTTACTTCGAAGACCAAAACTAGATTTCTAAGTTAGGAAAC
ACCCAAAGTGTTTTGCTATATTTTATTGTATACAGAATTTGGTAACACTC
AGGCCTGTGAAATATTAACCTTACTTTTTTGTAGGCTGTCCTTGGTGTTT
TTCATGCAATGCTTGATGTTATTTCCAAACAAGAAAATGGTGGTCAAAAA
TCTGATGGATCTGGTGGTTGTTCAATTTCATAATCTTTCTATGTGTTGCT
ACTGCTACTGTTGTTTGTATGTTACCCTTTTTCATCATTGTAGTTGCCTG
CCTGTTGTGCAGGAATTATTGATGGTAGTTCGAGGTGATATCATTTCGAG
GAAATATCATTTCGATGAAATATCCTTACTATTTTTCTCTCTGCTTTTTG
TAGTGTTTGTTGTTGAATAGTTCTGTCCAATTTTTATAGAAATAAATCAC
TGCACAATAGATTAGAcaaggaaaactttttttgctggATTTGGTGTAGA
CTACGTAACACTTTCAGAGATTGTaaatactttatattttttattatttc
attagAACTAAGTAGAGCTACATTCATTTTATTCATAATTACTTAACAAC
AGGCACGTAATCATTATTTTTCTCAGATTATGTGTAAATATTTTAGCAAA
ACGAAAAGTTTTCGCTCTAGGCAGGCTATCAGCTAGTTTGGGTCATGTAA
ATGCCCTATATTGAAGTTGGAGTTTGGTTATATGATTAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040917	XLOC_040917	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_435	supercontig	scaffold_435:132223..140662 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9474	16.0459	24.4657	18.2618	16.6028	5.82253	16.9056	13.5328	30.7449	30.8233	28.8863	26.4599	27.8757	20.7898	20.177	25.2016	24.8929	29.2194	19.0152	29.8873	35.6852	33.1949	23.0485	24.8663	5.746	5.29772	28.5952	22.867	29.3377	25.8723

Blast

[Close]

BLAST of TCONS_00065257 vs. Swiss-Prot (Human)
Match: RHEB (GTP-binding protein Rheb OS=Homo sapiens GN=RHEB PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.840e-74
Identity = 111/164 (67.68%), Postives = 131/164 (79.88%), Query Frame = 3

Query:   57 MAPPKSRKLAVMGFRSVGKSSLCIQFVEGQFVDSYDPTIENTFNSKIKHRGHEFHIELVDTAGQDEYSIIPQSYVVDNHGYILVYSVTSKKSFEVVKDIRDRLLDLSGVETIPILLVGNKTDLHMERVISPEEGSSLAKKWKAGFLESSAKENKAVLGVFHAML 548
            M   KSRK+A++G+RSVGKSSL IQFVEGQFVDSYDPTIENTF   I   G E+H++LVDTAGQDEYSI PQ+Y +D +GYILVYSVTS KSFEV+K I  +LLD+ G   IPI+LVGNK DLHMERVIS EEG +LA+ W A FLESSAKEN+  + VF  ++
Sbjct:    1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

The following BLAST results are available for this feature:

BLAST of TCONS_00065257 vs. Swiss-Prot (Human)

BLAST of TCONS_00065257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHEB	3.840e-74	67.68	GTP-binding protein Rheb OS=Homo sapiens GN=RHEB P...	[more]

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TCONS_00065257 (transcript) - C. hemisphaerica