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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065251 ID=TCONS_00065251|Name=TCONS_00065251|organism=Clytia hemisphaerica|type=transcript|length=618bp
ATATCCTCAAGATTTTTCACTCGTGGACAATGAAGGTCACAACGTTCTTC
ATTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGGAAATGTTTGAtcaa
caaacaatcaaaatgttgATCGATGGAAGAAGCGAACGGAACAGCACACC
ATTGCATCATGCAGTAAGTTGGaacaatcatgacgtcatcagttggTTGT
TGGCCAAAGGAGCGGATCatgaattgaaaaacaaagatggtCAACGCCCT
GATGAACATCCTCGATGTGATGGTGTTACCAAAGAAATCTTTCGATCGTT
TCGTTCGTCTtgattgaTTCCATTGTTTCCATTGTTTGTTTCATCGtttc
caatgacgtcatcggttccAAATTATTTCCACattCCCAACATGACAGCA
CGCATGAGAAGTTACATCCGTCATTTTTGACGCCGTTTCTACGCTTACGT
TATTTATTCATTCCGTCTCTACAGTTCTGTTTGCGTTCAAACATTACTAA
CTtcattttggcttgtttttagaTGTATTTTTACCACTTCACTAACTTGA
CTATTATTACGTCAACTGTCACTAGTTTTGGTGGCGTGTCTATTCTTACG
CCCTTATGATTCCACCTT Run BLAST on NCBI protein sequence of TCONS_00065251-protein >TCONS_00065251-protein ID=TCONS_00065251-protein|Name=TCONS_00065251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
YPQDFSLVDNEGHNVLHWVGWIGKVRHLEMFDQQTIKMLIDGRSERNSTP
LHHAVSWNNHDVISWLLAKGADHELKNKDGQRPDEHPRCDGVTKEIFRSF
RSS Run BLAST on NCBI transcript from alignment at scaffold_435:22403..24242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065251 ID=TCONS_00065251|Name=TCONS_00065251|organism=Clytia hemisphaerica|type=transcript|length=1840bp|location=Sequence derived from alignment at scaffold_435:22403..24242+ (Clytia hemisphaerica)
ATATCCTCAAGATTTTTCACTCGTGGACAATGAAGGTCACAACGTTCTTC
ATTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGGAAATGTTTGAtcaa
caaacaatcaaaatgttgATCGATGGAAGAAGCGAACGGAACAGCACACC
ATTGCATCATGCAGTAAGTTGGaacaatcatgacgtcatcagttggTTGT
TGGCCAAAGGAGCGGATCatgaattgaaaaacaaagatggtCAACGCCCT
GATGAACATCCTCGATGTGATGGTGTTACCAAAGAAATCTTTCGATCGTT
TCGTTCGTCTtggtaagaaaaatatcaactttttcataatttttttaggg
TTGAATTATTttcggagtttttttttttttctattcgtGCGACAaatgtt
gaaacttttttttaaattattttcaatagaagtgaaaagttatttaaaaa
gtCTTTTAATTTTTACAGTTTGATAAATCTCACCTTTTTGGAGTTCGAAT
GAATGAAACGAATGAATTGATTTCGATATattgattgagatttttcattg
cattgaACCAAACATATTTTGGAGACGGTTGAAATTTACAGATAGATGGT
TGTTTGTGGAATGTTTCTCAGGttgttatgaatttatttttggtGAAGAA
AGAGATTGtcgttttttgattttatcgATCATTGTTCAAGTGcttcaaat
gtttttcattcgattatttatttttcagattgaTTCCATTGTTTCCATTG
TTTGTTTCATCGtttccaatgacgtcatcggttccAAATTATTTCCACGT
AAGTATATTTAATCATTTACTTGGTTTCCGGCTGATGTGAAATTGCCTTA
AGCCTAAATTTTTCTGCATACCAGAATTGTTTTAACAAATGAACCTATTC
TAAAACTTAGAAAGGAGGGCTTggttagcctgtaccaaactcttcttggT
GGACTGATGTACAGTTCGGACTTTTATGTGACTGAGACAAATCCACGCAA
GTTGGTTGTATGGTTGTACAGAGTTGAAAGATTTTTAGAACTTAAGCTTC
TTtaattaggcgagaccaatttaatttgttgttctacgggcccgaccgac
cctatttttgctaaaatcaaaaaaataataatattgaattttcactacaa
tatGTTTTatacactagttatttgtaagaattaaacttgaataaagctga
aaattaattcaagaaatcaTAACAAGAAATCATAAAAGCATTCCATGCAC
TAAAATTTTactatgatcttcatcgaagataaaaagaaagtgaatttttg
atccagatactttttggaaaattttctcggtaccttaccaaccctgataa
atgaaaaatttattcttattttgccgaccgaccgacccatatttctCTAA
CGATCTGTCCGTAGAACAATGAATTAAATTGCTCTCGTCTTAGTCGAATA
AATGCAATTGTTTTTGTACTcggtgttttttaaacttttccaCCACATCA
GCATTCTCCTAGCCgcttctttaaaaaaaccaCTTATTCATCTTCGAGTT
AGCAAGTTTCGTTGTGCAATTAAcctccaaaattttcaatttttttattt
ctagattCCCAACATGACAGCACGCATGAGAAGTTACATCCGTCATTTTT
GACGCCGTTTCTACGCTTACGTTATTTATTCATTCCGTCTCTACAGTTCT
GTTTGCGTTCAAACATTACTAACTtcattttggcttgtttttagaTGTAT
TTTTACCACTTCACTAACTTGACTATTATTACGTCAACTGTCACTAGTTT
TGGTGGCGTGTCTATTCTTACGCCCTTATGATTCCACCTT Coding sequence (CDS) from alignment at scaffold_435:22403..24242+ >TCONS_00065251 ID=TCONS_00065251|Name=TCONS_00065251|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_435:22403..24242+ (Clytia hemisphaerica)
TATCCTCAAGATTTTTCACTCGTGGACAATGAAGGTCACAACGTTCTTCA
TTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGGAAATGTTTGAtcaac
aaacaatcaaaatgttgATCGATGGAAGAAGCGAACGGAACAGCACACCA
TTGCATCATGCAGTAAGTTGGaacaatcatgacgtcatcagttggTTGTT
GGCCAAAGGAGCGGATCatgaattgaaaaacaaagatggtCAACGCCCTG
ATGAACATCCTCGATGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTT
CGTTCGTCTtgaTATCCTCAAGATTTTTCACTCGTGGACAATGAAGGTCA
CAACGTTCTTCATTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGGAAA
TGTTTGAtcaacaaacaatcaaaatgttgATCGATGGAAGAAGCGAACGG
AACAGCACACCATTGCATCATGCAGTAAGTTGGaacaatcatgacgtcat
cagttggTTGTTGGCCAAAGGAGCGGATCatgaattgaaaaacaaagatg
gtCAACGCCCTGATGAACATCCTCGATGTGATGGTGTTACCAAAGAAATC
TTTCGATCGTTTCGTTCGTCTtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065251-exon-scaffold_435-1491911889:22403..22714 | TCONS_00065251-exon-scaffold_435-1491911889:22403..22714 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1510915933:22403..22714 | TCONS_00065251-exon-scaffold_435-1510915933:22403..22714 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1575043694:22403..22714 | TCONS_00065251-exon-scaffold_435-1575043694:22403..22714 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1491911889:23131..23200 | TCONS_00065251-exon-scaffold_435-1491911889:23131..23200 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1510915933:23131..23200 | TCONS_00065251-exon-scaffold_435-1510915933:23131..23200 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1575043694:23131..23200 | TCONS_00065251-exon-scaffold_435-1575043694:23131..23200 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1491911889:24007..24242 | TCONS_00065251-exon-scaffold_435-1491911889:24007..24242 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1510915933:24007..24242 | TCONS_00065251-exon-scaffold_435-1510915933:24007..24242 | Clytia hemisphaerica | exon |
| TCONS_00065251-exon-scaffold_435-1575043694:24007..24242 | TCONS_00065251-exon-scaffold_435-1575043694:24007..24242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:22403..24242 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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