TCONS_00065225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065225
Unique NameTCONS_00065225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065225 ID=TCONS_00065225|Name=TCONS_00065225|organism=Clytia hemisphaerica|type=transcript|length=1382bp
aaattcagaaaaaactaagtccagaaatcagaaaaaacagagttagagat
aggaaatagagaaaaagaggAGAAGGGCGGAATTGGTGATNAACTGTTAG
CGTGCAAGCCAAGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAG
GAAATTGAAGTACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACA
GGTTGCAACAAAGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAA
AACCTCCCACCTATTTGCAACATGTAGAACCCCCTCAAAtGAGCTGTCCA
AATTAGCAGAAGAGAATTCTAATCTACACATTTTGCATGTTGAAGTAACA
AAGGATGATGACATCTTTGCAGCTAAAGAACAAGTATCACATTTTGTGGA
AGATGGCGGTTTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATG
AACATGCAAAGATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTAC
CATATAAACGCTGTTGGTCCTGCCATGATGGTTAAGGCATTCTTACCACT
TTTAAGACAAGCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTGGCG
TATTGAATATTAGCTCCAGAACTGGATCGATTGAAGATAATGGTATGGGC
AAGCTGTATGGCTCAAGGCTATCCAAAgtAGCTTTAAACATGCTCACAAA
AAACCTAAGCATAGAGTTGAAAGCAGACAATCTCATAGCTGTGGCTTTGA
ATCCTGGATGGGTCAAGACAGAAAATGGTGGGGAGAATGCGCTGATAACA
GCGGAACAAAGTGTACATGGCATGCTCAGTGTTTATAAGGGCTTAACAAT
GAAAGATTCAGGTGCTTTCCTGAGCTATGATGGTTCAACAATACCTTGGT
GatgcaacaaaatttttttattatttttcaatgtaCATTTTTAAGTAATG
TTTTTCTACACATATGCACTACACTATCTGATGATAAAATAGGACGTTCT
CAAATGATTGGATGACATAAATAGAGTACTGCAGGCTATCCTCGAATGCC
CCCATATATACTACATCCCCCTATATAATATACACCTACCAAACCCGCAC
TATTTAAATTAGCGGTCTGTCAAcctttttttaaccattttccaGCCATT
TTCCATTATCAGATATGATGTTTTACAGATTTGGTAATCCTGAGGAAACT
GGATTACACACTATTTTGAAAATAGCGCAACTACTCTTAAGTGCCAAATA
AATGGCCCCCCCCgtttaataatttttaaaaatatttttagctgtCAAAT
AGAAggcccttattttgctctaaatagcctgattttagcctatatttacc
ttattttggggttttcagaagtacaatttcca
Run BLAST on NCBI

transcript from alignment at scaffold_433:516819..523281-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065225 ID=TCONS_00065225|Name=TCONS_00065225|organism=Clytia hemisphaerica|type=transcript|length=6463bp|location=Sequence derived from alignment at scaffold_433:516819..523281- (Clytia hemisphaerica)
AAATTCAGAAAAAACTAAGTCCAGAAATCAGAAAAAACAGAGTTAGAGAT
AGGAAATAGAGAAAAAGAGGAGAAGGGCGGAATTGGTGATNAACTGTTAG
CGTGCAAGCCAAGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAG
GAAATTGAAGTACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACA
GGTTGCAACAAAGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAA
AACCTCCCACCTATTTGCAACATGTAGAACCCCCTCAAATGTAAGCTTTT
TCACATTTTTGTTTGACCTTGACACTTTTATTTGACTTGTCAGATTTTAG
ATGTATAACAATAGGGTGTCTCCACAAGGGTCTATGGGCATCAGCAGAAA
CAACTATATTTGTTTGTGTTCGATTGCATTTGAATAACGTTTTATTGGTT
CATAGACCTTTTCGCCGACGACCCACGCCACGGCATGGCCCGTCGCCCGA
ACATGTTCGGTCCTGTTCGGACCATGCTCGGGCCACAAAAAATTATTATT
GAATCGGCCCAAACATTTTGTTCGGACCATGTCCATAGGAATAGTAGAAT
AGTAGAATTTAATTTTATTTACCTTTCCTGGTTTATCATCATCCATTGTT
AAATATTTTCATTAGATTATTAGACAAATTCAAAGTTCCAAATACCAGTT
TGATTCACAAAGCTGTATAACAGTACAAAAAAAAATTCCAGAAAAATTCT
GCTTCGAATAGGAGAAGACCACGAGAAAAGGGAACGGGATAAAGAATAAA
AAGAACACCATATATTATGTAAGATTCAAATCATTCTTTTTAATAATTTT
CCTAACTTAATTGGAAAAAAGATGATTAACTTTTATATTTGAACAATATA
TATTTGAATAAAGATGAAGATTTTTAAATTTGTTTGCTAAAATAATGAAT
TTAAAATATAAATATTGGGTCCTGAAATTACATGCGGCAAGTTTTCGAAA
ATCTGGCCCGAACATGGTCCGAAACTGCGCCATTTAAAAAAAGTATTAAT
CAAGAGGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTTTTCGCCTCCC
TTCCATCCGCCATATTCCAGACATAATTAATCAAACACAGTTCGATTATA
ATCGAACAATCGAACTTTGTCGAACTTAATCGAACGACAAAAGTTGCTAA
AATTGTGAGTATTCGATTAAGTTCGACAAAACATATTAAGTTTGACAAAG
TTTGACAACGAGAAATGTTTGAAAAATTTGACAAAAAACTCCGTTCGATA
AAGTTCAACAACAAGGAAAGGTTCGACAAATTCGACAAAAAACTCCGTTC
GAAAAAGTTCGACAACACAAAATGACCAAGTTCTTCAAAGTGTTGTCAAA
AGCTGGCAAAAATTACGAAAAATGACCTCCTTTGGGTACCAGCCCCGGTG
GGACCAATCTAGGCCTCTACAGCCCCCCACAGCCCTTCGGACCGCTTTGG
ATACCCTCTGCCTTGCTTTCCCTCAAAGCCAGCACCATCCATCAGTCATC
CGAAGCCCTTAAAAGGCTTGGAAAGGCGGAAAGGCTTGAAATTGGTCAAA
ATTGGAAAAAAAATGACCTCCTTTGGGTACCACTGCGGACGGCCCCTGGG
GGTCCTGGCCGGTGTGCCGGGGGGTCTGATCGGTGCTCAGTGGTCAGGGG
GGTGTAAGCGAACACGCCTGCCCCGTTGGGGGTCCTTCAAAATTCCTCAA
AGTGCCATCAAAAGCCGGCAAAAGTTGTCAATAATGACCTCCTCAATTGA
GGCTGCTACACCCCTTTCTCACCAGGAAAAATCGATGGTGAGACCAATTG
AGGCCTCTACAGCCCTCCATAGCCCCTGTATTTTTGCATACATCAAGATA
ACGGATGGAAATGCGAAAAGGTCTATTGATTTCAAATAGCTTTACTTTCA
ATCGATCTTCTATTATGTTGGATTAGTATGATTACGATTATGTTTGATAA
GTTTGATTGCAATTTAATTGGCCCACTCCTTTCTTTATACATAGAGCTTT
AGCGTGGGTGGCCATGGGAAAATTAAATAAGAGTGACTGCATAAGTACCT
TACAAGAAAGGCCATATATATTTTAGAAGGGCACTTTTTCCAGTGTTTTT
CCATTAAAAAGGCTGTTTTTACCAATATTTTAGTAATTTCAAGAGGGGCA
AGGTACGATAACTGGACCCTTATAGGGCATGAAAAATGACCTGCATCAGT
AAATAAATCAAATGAATGTAATCAAACATAATCGAATACAATCAAACGTA
ACTGAAGCAATTGAATGGCAAATCCTGTGTAATATTCAATTACGACATTC
GACAATTCAATCACAATTATTCAACTGCATTTGATTGTGTTCAATTGATT
AGGTATTCGATTAATTTGATTGACACCGTCTGGCCATGGCAACAACAATG
ATGATAGCGACTTCAGAATTCACACAGCTTTTGTTGATGCCAAACCAAAT
GTTTCATTTTTTTGTGAATTTTGAACCCTTCTAACTTTTCTCTACCGTCA
ACTGCTCTAACTTGGGACGATTGGTCGAAACATACCGGGTGTCTGTGAAA
ATACTTCCCCCTGTTTGATTCAATATTGCGAAAAAGTGAAAAAATATATT
AGCTTTATTTTTTCTAAATCGTTTAGAGGAGGGTTTAACTTAAATTTTGG
TATATCAAACTTTAACATTGCTTCATTAGATCAAAAGTTATGACAAAAAG
AGTAAAAAAATTGTTGTCAAAAAGAGCACAAAAAGACGAAAAAACAAGGT
ATCAATTTACTTTTGATCTTCNGATAACTTTCACTGATAGTGCGCCGTTT
TTAATTTTTTTTATTCAAAATGACCGGATGCCGATTGAAGAAATAGAGAA
AAAAGTTGCAATCATTGATGAACAATTATGTATGTCTCTGGAAATGGTTG
AAAACATAGTTGCAGGTTGAAACTTTGTATGTTTATCAGAAAGGAATTTA
ATAAGAACTTTAACACTATTACATTATTAAAATTTATTGTTCAAGGAGCT
GTCCAAATTAGCAGAAGAGAATTCTAATCTACACATTTTGCATGTTGGTA
AGAATATTGTAAGTTTTCTCACTATATTTATAAAATAATGTAGAATTAAA
AAACTCTGGAGAAGATTTTCAACCAAAATTATAGAAAACAGTGGTGTCTT
ATCATTTCATGGACAAGTTCTATTGAGTTTATTAAACTTAAAAGTACCTA
GAAGGGAATCTTTTGGATGGAAAACTAAGCAACTAATGTCACAGGTTGGT
TACCCAATTGTAGTTTTCACTCGAGAACAATGAAAAGAAACAATAGATTC
AAAAGTTTACCACGTGGTAGCAAAATTTGAAGAAGGGAATCTTTTGGATG
GAAAACTAAGCAACTAATGTTACAGGTTGGTTACCCAATTGTGGTTTTCA
CTCGAGAACAATGAAAAGAACCAATAGATTCGAAAGTGTTTACCACATGG
TAGCAAAATAGAGTGCACTCTTTAAGCAAATGGACTACGTAAACATTTTC
GAGCTTATCTACAATAGTGTGGTGGTTCCCCTTAATTTGAATAGCATTGC
CATCAAGGCAGAAGATCCAATCTCAAAATAAGTACATGAGAAAACTTCTT
TTACTTTGCTAGCTTGAAATTTGAGTTTGTCCCCCTTTTTTCTCTTGATC
CTACCCAACTAAAAGAAAAAGGCCAGAATCTCAGAATTTTAAGTTAGGAA
AGCAAAAAAAGTCTCAGTTATCTCAACACTAATTTTGAGATTGGATCCTC
TGCCTCGATAGCAGTGATAGATGGATCCATTTTGATTTCATAGAAGTAAC
AAAGGATGATGACATCTTTGCAGCTAAAGAACAAGTATCACATTTTGTGG
AAGATGGCGGTTTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTAT
GAACATGCAAAGATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTA
CCATATAAACGCTGTTGGTCCTGCCATGATGGTTAAGGTAGACAATTTCT
CTCATGCCTTGTCAGGGAGTCAAGAAAGTCTGGATAATAATTTCTTTTTG
TCTTCATTTTACAGTTCCTTGGTTGATTCTAGTTTTAACAAAACCCTGAT
TATAGCTTTCTATTTTCAGGCATTCTTACCACTTTTAAGACAAGCTGCAA
CAAATTCTTCTTCAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCC
AGAACTGGATCGATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAG
GCTATCCAAAGTAAGCGCGATATTCTAAATAGAACATTTAGCATAATTTT
AATAATATTTACGACTTCAGGTGAGCTTTCACGATGCTCAATGGAAACTG
GTAGTTACCATGCCCTTGTGCTTTTTTTCAGACGTGCCGATTTTTGAATA
AACGTATCGTCTCATTTATATTCTTTTATATCATTTATTTTCCAGGGAGA
AAGAAGATAACGAACTAGCTAACTAGCTATATTTTGTTTAAGATTTGTTC
TTGTTTTCTATAAAAAAAATTTATTTTGTTTTGAAAAGAATTCGAATGTC
ANTTCAACACTAATTTTGAGATTGGATCCTCTGCCTCGATAGCAGCGATA
GATGGATCCATTTTGATTTCATAGAAGTAACAAAGGATGATGACATCTTT
GCAGCTGCTGAACAAGTATCACATTTTGTGGAAGATGGCGGTTTACATTG
TCTCATTAACAATGCTGGTGTTGTGAATTATGAACATGCAAAGATGGAAA
ATTTGACATCAGAAAGTCTTTTAAATACTTACCATATAAACGCTGTTGGT
CCTGCCATGATGGTTAAGGTAGACAATTTCTCTCATGCCTTGTCAGGGAG
TCAAGAAAGTCTGGATAATAATTTCTTTTTGTCTTCATTTTACAGTTCCT
TGGTTGATTCTAGTTTTAACAAAACCCTGATTATAGCTTTCTATTTTCAG
GCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTCTTCTTCAACTGC
AATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTGGATCGATTGAAG
ATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCCAAAGTAAGCGCG
ATATTCTAAATAGAACATTTAGCATAATTTTAATAATATTTACGACTTCA
GGTGAGCTTTCACGATGCTCAATGGAAACTGGTAGTTACCATGCCCTTGT
GCTTTTTTTCAGACGTGCCGATTTTTGAATAAACGTATCGTCTCATTTAT
ATTCTTTTATATCATTTATTTTCCAGGGAGAAAGAAGATAACGAACTAGC
TAACTAGCTATATTTTGTTTAAGATTTGTTCTTGTTTTCTATAAAAAAAA
TTTATTTTGTTTTGAAAAGAATTCGAATGTCATTAGTAATCAAATAAGGT
CGTCAATTACATTTGAAAATATATAAAAGAAAAGAGAAAAAAAAGGGGTA
AAAAGGGCAGAAATTAAAATTGCTTAATGTAGATGGGTATTTAATTTCAA
AACAAAGGCCAAACGAAGTCTACAGGCTCTATCAACAAAAACATTCCGAA
AACGAAAGAGTAACACATGTACAGACAGACAGACAGACAAACAAACAAAC
AAACAAAGTGACATACAGACTACGGCTATTAATTTAACGTAGTATATAAA
TACAGTAAAACACTTTCAATCATATTCATTGTTCTTTGACCTATCTTTTT
CATTTCAGGTAGCTTTAAACATGCTCACAAAAAACCTAAGCATAGAGTTG
AAAGCAGACAATCTCATAGCTGTGGCTTTGAATCCTGGATGGGTCAAGAC
AGAAAATGGTGGGGAGAATGCGCTGATAACAGCGGAACAAAGTGTACATG
GCATGCTCAGTGTTTATAAGGGCTTAACAATGAAAGATTCAGGTGCTTTC
CTGAGCTATGATGGTTCAACAATACCTTGGTGATGCAACAAAATTTTTTT
ATTATTTTTCAATGTACATTTTTAAGTAATGTTTTTCTACACATATGCAC
TACACTATCTGATGATAAAATAGGACGTTCTCAAATGATTGGATGACATA
AATAGAGTACTGCAGGCTATCCTCGAATGCCCCCATATATACTACATCCC
CCTATATAATATACACCTACCAAACCCGCACTATTTAAATTAGCGGTCTG
TCAACCTTTTTTTAACCATTTTCCAGCCATTTTCCATTATCAGATATGAT
GTTTTACAGATTTGGTAATCCTGAGGAAACTGGATTACACACTATTTTGA
AAATAGCGCAACTACTCTTAAGTGCCAAATAAATGGCCCCCCCCGTTTAA
TAATTTTTAAAAATATTTTTAGCTGTCAAATAGAAGGCCCTTATTTTGCT
CTAAATAGCCTGATTTTAGCCTATATTTACCTTATTTTGGGGTTTTCAGA
AGTACAATTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040891XLOC_040891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065225-exon-scaffold_433-1575043694:522992..523281TCONS_00065225-exon-scaffold_433-1575043694:522992..523281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1575043694:520185..520236TCONS_00065225-exon-scaffold_433-1575043694:520185..520236Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1575043694:519245..519438TCONS_00065225-exon-scaffold_433-1575043694:519245..519438Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1575043694:518141..518281TCONS_00065225-exon-scaffold_433-1575043694:518141..518281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1575043694:516819..517523TCONS_00065225-exon-scaffold_433-1575043694:516819..517523Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1510915933:522992..523281TCONS_00065225-exon-scaffold_433-1510915933:522992..523281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1510915933:520185..520236TCONS_00065225-exon-scaffold_433-1510915933:520185..520236Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1510915933:519245..519438TCONS_00065225-exon-scaffold_433-1510915933:519245..519438Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1510915933:518141..518281TCONS_00065225-exon-scaffold_433-1510915933:518141..518281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1510915933:516819..517523TCONS_00065225-exon-scaffold_433-1510915933:516819..517523Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1491911889:522992..523281TCONS_00065225-exon-scaffold_433-1491911889:522992..523281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1491911889:520185..520236TCONS_00065225-exon-scaffold_433-1491911889:520185..520236Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1491911889:519245..519438TCONS_00065225-exon-scaffold_433-1491911889:519245..519438Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1491911889:518141..518281TCONS_00065225-exon-scaffold_433-1491911889:518141..518281Clytia hemisphaericaexon
TCONS_00065225-exon-scaffold_433-1491911889:516819..517523TCONS_00065225-exon-scaffold_433-1491911889:516819..517523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:516819..523281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.2735	2.63033	3.70396	4.03693	0.185843	0	0.0446821	0	0.120108	1.87974	1.97535	2.60222	4.41297	0.00294342	2.97657	1.79136	3.30344	1.29078	5.01763	0.568046	3.23267	3.2072	5.20189	2.67925	0	0	0	0.484917	2.42038	1.58203
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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