TCONS_00065219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065219
Unique NameTCONS_00065219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065219 ID=TCONS_00065219|Name=TCONS_00065219|organism=Clytia hemisphaerica|type=transcript|length=1669bp
attttttgaaagtgtctggGGTGgggcctagatatgcttataagtgcaat
gcttataaaaaacatggaGTGAATTGAAAGTTTCATGAAATCTTCACAAG
CTTCATaagatttattattttcatagctAATAACAAGTGGCATTTATAAC
TCTGATTCCAAACTGTCAAGTGTCATGAAAGCACGTAAAAACGTTGAGAA
AACTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAATTTTGTCCAAGTT
GTGAGAAGAAATTCACATTAACATTCAGAAGAACACATTGTCGATTATGT
GGTCAGGTTTACTGTATAAACTGCATTGATTTCTTAGAGCCCAGCCTTGC
TAACAGCGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCACAAATGA
TGTTGAAAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGCATCAGA
TGCTTAAACTTACTCGAAAGGCAAAATAAAGTGTTCCAAGATAAAACAGC
CAATGAACTTTTAGTGAAGTCATATGAGCGAATGAAATCGGCAATGCAAA
ATGCAGACTTGATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAat
gCAGGCGAAACAGAGTATAGCTTACAATTGGCAATGGAGACACGTCACAA
ACTTTTAAAACAGTATGAAACTATTGAGAGTCTCAGTAAACACATACAAC
AGCTAGGCATTGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGTTG
CAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATGTT
TACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCAtgttgaaag
aaaaagaaaaacaacgtGAGAGaatgaaacaagaaaaaatgCTACAAGCT
GCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTTGA
TAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATCTG
CAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGATTCAACG
TCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGTGG
TAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGATG
GTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAGAC
AGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACATACAAC
ACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTCTT
GGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTCAA
CAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGACG
TTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTACACATGG
TTCGCCAGGCTGATAGGTAGCCCTCCTGGGTTTCGATTTTTTGGTTTTAT
TACTGGTTCATAATAGGGGGAAGGTATGCACCAGCGGGAAACTTATATAT
TCTTATAGCTCCTGAAGAAATCATCTTCAGGCATGATTTTCTTTTCGCAC
ACCTTTGATCATAATCACATTTATGGCATTAATGTGTCATAAAGATTGGC
ACTTTTAGTTTTCAGTACG
Run BLAST on NCBI

transcript from alignment at scaffold_433:464797..469592-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065219 ID=TCONS_00065219|Name=TCONS_00065219|organism=Clytia hemisphaerica|type=transcript|length=4796bp|location=Sequence derived from alignment at scaffold_433:464797..469592- (Clytia hemisphaerica)
ATTTTTTGAAAGTGTCTGGGGTGGGGCCTAGATATGCTTATAAGTGCAAT
GCTTATAAAAAACATGGAGTGAATTGAAAGTTTCATGAAATCTTCACAAG
CTTCATAAGATTTATTATTTTCATAGCTAATAACAAGTGGCATTTATAAC
TCTGATTCCAAACTGTCAAGTGTCATGAAAGCACGTAAAAGTAAGATTAA
TATATTTTTTCACTTGCTCATTTCTGTTTGTTGCAGTTTCAAAGTTTTCT
CTTGTTTTCAGTAACAATAAGAAATTGATTTTGTGATTTTGCTTCCACAT
TTGGCCCATCATTGGGCCTTTCATTACCATGTCGCTGACGCGGTGCTAAT
GTCTCCATTTTTGAAGAAGCAGCACTTTGTTAACTCAAGCTCATTTTTGA
AGAAACAGCGTCTTCTGGTGCCAAGTTTACACATTGCAAACAAACATTCG
ATTCATACTGCTTCACCTTCTTGTTTTTAATGTTGAACTCTAAAAAACTT
TTTAGCTTGATACTGTTTAAAATAATCGACGTTTTCGATACATATATTGA
CAGATGTAACAAAGTTTGGCTGTTTCTGTTCAGCTTTTTGTTGTATTTTT
TATAATTAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAA
GTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAAG
AACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCATTGATT
TCTTAGAGCCCAGCCTTGCTAGTAAGTATAAACAACAACAAGTTCCCTAT
TCTGTTCAATGAAAACTTGACATATTTCATATAGATTATCGAATATATAC
CTCTCAACTCTGGGCTCTATTATTGTGATTTGATTCATGGGTGTTACCAA
GCACTTCTTCTTATCGTCATCCTCCTAAAATTGAGTGTTATTAAAATTTA
ATAATAAAACATGTCAGGCTGGATTACATTTTGTGAATTTTTTTCCAGCC
AGGATTTTGTTTTTATTGCACTTTCACCCTGATATTATCGGTGGTTTTAT
TGGGTTTTTGCTGTATTTTCTGCTTTTTGCTCATTCTCATAAAATTGAGT
ATGGTAATTTGTAATGAGGCTCTTGGATAAAACCCTGTAGAATAAAATTT
CAGGCGTGTGGTCAATCACACTCCTAAAACCTTAATTTTAGTAATTTAGG
CGTGTGATAAGGAGTGCTATGCACAACTTTCAGTTGTGAAACTTACTTTA
TGGTATGTGATTGATCGCACTCCTCAGACATTTTAGGTGTGTGTGGAGGT
GTGCGCGTGCTATTGCACGCTTCAAATGATGTAGATTTGGAAGATAGAGA
GATAGTCGTATAATATCATCTCATTCCAACACTCTTCTTTATAGTTGGGA
ATTTGAATGACCTGATTCTGATGGACACATCTCGTTTTTTTCGGATGAAT
AGGAAAATATCTTATGTCAGTCAGTGATTTTAACCTTCTATATTCCTATT
TTCTTTAGACAGCGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCAC
AAATGATGTTGAAAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGC
ATCAGATGCTTAAACTTACTCGAAAGGTTATTTGTTGTGGATTTTTTGAA
TAATTATCTAAAGCCAATAATTATGTTCATTTGTATTATTGTATTCACAA
TCAACACCAAAAATATTAAATCAAATATGAAAATTCACAGCAAAAAAAGC
CTTTAAAATTGNAAAGGTTATTTGTTGTGGATTTTTTGAATAATTATCTA
AAGCCAATAATTATGTTCATTTGTAAAACACCAAAAATATTAAATCAAAT
ATGAAAATTCACAGCAAGAAAGCCTTTAAAATTTAAAAGTTTTGTTTGAA
AATCAATTTTTAACTGTCAAACTTGGTTATTTTTTAACACTTTTTCTTTT
ATTATTTTCTTATTGCAGGCAAAATAAAGTGTTCCAAGATAAAACAGCCA
ATGAACTTTTAGTGAAGTCATATGAGGTAAGACCATACTTTAAATTTTTT
ATAATATTTCCTTCTGGCCATAGTCAGTTAATTCTACAATTATAAAGCTA
TTTTTTTCTCTTTATTGTTTTACAGCGAATGAAATCGGCAATGCAAAATG
CAGACTTGATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAAGTAT
TTTATCTTTTTCTGTTATACTAATTATTATGTCCAAAAAATACTTACTTG
GATGCTTCATATAAAAAGAATTCTCATTTAATAAAGTTGATGCTGATGAA
TAATATAAACTTCATTGGAAAAATCATTTAAGCTGGATTATTATTGAAAT
TATAAGTAGCATGGTTTTTTAAGATTTTCTCCTTTTTGGTTGTACTGTAT
TGTAGTTATACGATAGGCTATATATTTTTATGATTTAGAAAACTTTTAGG
ATAGGAAACTGTGGGAAACTCTGGGAAACTTTGTAAAAAAGACAAGCAGG
GCTGCAAATAAGCGTCGGTCATCGGTCAATGTCCGACTGAAAAAAGGAAT
AAACCATTAACTTGAGAGTTGAAAATAGATCTCTTACACCTCTGTCTCTT
ACTTAGCCTATTCTTTTAATACTCGCTTCCTTTGTAGCTTTCAGGGTGTT
TCTAAGTTTTTTACTTTTATCGAATTGCTTTCTTCATTACTTTCTTTGTT
TCTAAGATCACTTTTATCAACCCGCTTTCTTTGTAACTTTTAAGGGTGTT
TCTAAAATTACTTTTGTCAACTTGCTTTCTTCCTAACCTTCTTTGTTTCT
AAGATCACTTTTATCAATTTGCTTTCTTTGTAACTTTCAAGAGTGTTTCT
AAGATCACTTTTATCAATTCGCTTTCTTCGTAAATTTCAAGGGTGTTTCA
AAGTTAACTTTTATCGATTCGCTTTCTTCGTAACCTTCAAGAGTGTTTCA
AAGTTAACTTTTATCGACTCGCTTTCTTTATAATTTTCAAAAGTGTTTCT
AAAGATCACTTTTATCAATTCGCTTTCTTCGTAAATTTCAAGGGTTTTCA
AGGGTGTTTCAAAGTTAACTTTTATCGACTCGTAACTTTCAAGAGTGTTT
TTAAGACCACTTTTATCAACTTGCTTACTTCATAACTTTCAAGAGTGTTT
CTAAGATCACTTTTATCGAATCAATTTCTCTGTTATATACAGTAACAAAC
TGTTCCGAGGTAACTTTTATTTTACCTACTCGCTTACTCCGTAACTTTCA
AGACTGCATAATTATTAAAAATATATACACTGAATGACCGGCAGGATTTT
GAGTTTGACCGACAGGATTTAATTTCTGTCGGACATGATGTCCGATTGAC
TAAAAATATTTATTTGCAGCCCTGGACAAGCAGTTGCTCTAATTATTTCA
TCAATTTTATTTTGTTTTTAGTGCAGGCGAAACAGAGTATAGCTTACAAT
TGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTGAG
AGTCTCAGGTATTATTTATTATAATCCTCTCTTGTCAAAAGGCTGTTGTT
TCATCAATGTGCTTGAAACATTCCATGAAGGCTTGAACACGAATTTTATC
TTTTATTTCCAAACTGTAGCTGTGACATTAAGCAACACGAATAAAGCATC
TCAGATACCAAGTTTTTGTCTTAAAATACCTTAAAGGGGAAAACATAGTC
TGTTACCATCCTCTTGAAATTGACCAGAAAGAGTTTCCATTATTCCGTCA
CATTTCCCAGTCTAACTTTTCCTCCTAAAAGTAAACGTTCTTTGATGCTT
TACTTTGTTTCAGTAAACACATACAACAGCTAGGCATTGGAACTAATAAA
GAACCAGGACCCCGTGCGCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGC
ATCAAGCTATCTAGCAGACAACATGTTTACGTTACCAGGGTTACCCTCCC
AAGATAAATATGACGCCATGTTGAAAGAAAAAGAAAAACAACGTGAGAGA
ATGAAACAAGAAAAAATGCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTT
GAATCGTGGGAAAAACAATAATTTTGATAGCCTGGATTCCGGTCAACCAA
CTGGTAACCAGTCTAGAGATCCATCTGCAGAACGTTCAATTCCAAATGTA
CCAGACAATGCACATGTTGATTCAACGTCAGGTAGAACTTCAGTAACTGG
ACTTAATATAAGAGATCGTTTGAGTGGTAAACATAAAGAAAGACAGAAAT
TTATAGGTGATTCTACAGACCCTGATGGTGAATACCATCAAGGGGGACCC
TCTACTAGTGGCCCTCGTATTAGAGACAGATTCAACAGAGCCATGAACGA
GTTCGTTGATGATGTCAAACATACAACACACTCTGCGATTCAAGCTATTT
CTATTTCCAAACCGACTGAGACGTCTTGGGGACCGGCTCAAGTTCAAGTT
GATGATGACTCTGACCCCATACTTCAACAAATTCAAATTATTGAGAGTTA
TATTAAACAGGCTCGTGATGACGGACGTTGGGAAGAAGTGAAAATGTTTG
AACAGAATTTACAAGAACTACACATGGTTCGCCAGGCTGATAGGTAGCCC
TCCTGGGTTTCGATTTTTTGGTTTTATTACTGGTTCATAATAGGGGGAAG
GTATGCACCAGCGGGAAACTTATATATTCTTATAGCTCCTGAAGAAATCA
TCTTCAGGCATGATTTTCTTTTCGCACACCTTTGATCATAATCACATTTA
TGGCATTAATGTGTCATAAAGATTGGCACTTTTAGTTTTCAGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040888XLOC_040888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065219-exon-scaffold_433-1575043694:469403..469592TCONS_00065219-exon-scaffold_433-1575043694:469403..469592Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:468822..468983TCONS_00065219-exon-scaffold_433-1575043694:468822..468983Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:467967..468084TCONS_00065219-exon-scaffold_433-1575043694:467967..468084Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:467567..467624TCONS_00065219-exon-scaffold_433-1575043694:467567..467624Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:467397..467467TCONS_00065219-exon-scaffold_433-1575043694:467397..467467Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:466085..466171TCONS_00065219-exon-scaffold_433-1575043694:466085..466171Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1575043694:464797..465779TCONS_00065219-exon-scaffold_433-1575043694:464797..465779Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:469403..469592TCONS_00065219-exon-scaffold_433-1510915933:469403..469592Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:468822..468983TCONS_00065219-exon-scaffold_433-1510915933:468822..468983Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:467967..468084TCONS_00065219-exon-scaffold_433-1510915933:467967..468084Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:467567..467624TCONS_00065219-exon-scaffold_433-1510915933:467567..467624Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:467397..467467TCONS_00065219-exon-scaffold_433-1510915933:467397..467467Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:466085..466171TCONS_00065219-exon-scaffold_433-1510915933:466085..466171Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1510915933:464797..465779TCONS_00065219-exon-scaffold_433-1510915933:464797..465779Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:469403..469592TCONS_00065219-exon-scaffold_433-1491911889:469403..469592Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:468822..468983TCONS_00065219-exon-scaffold_433-1491911889:468822..468983Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:467967..468084TCONS_00065219-exon-scaffold_433-1491911889:467967..468084Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:467567..467624TCONS_00065219-exon-scaffold_433-1491911889:467567..467624Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:467397..467467TCONS_00065219-exon-scaffold_433-1491911889:467397..467467Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:466085..466171TCONS_00065219-exon-scaffold_433-1491911889:466085..466171Clytia hemisphaericaexon
TCONS_00065219-exon-scaffold_433-1491911889:464797..465779TCONS_00065219-exon-scaffold_433-1491911889:464797..465779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:464797..469592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.1963	16.3591	4.43236	4.37446	8.01351	4.53027	7.8479	7.82681	4.76186	3.77164	2.00397	3.2652	2.42731	2.27414	4.79483	3.78701	6.04589	5.5159	2.51202	4.56087	2.32336	3.06426	15.1314	17.1671	7.34103	5.40516	1.13041	2.63409	11.3557	12.3042
Blast
[Close]
BLAST of TCONS_00065219 vs. Swiss-Prot (Human)
Match: RBNS5 (Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 8.844e-36
Identity = 77/240 (32.08%), Postives = 128/240 (53.33%), Query Frame = 1 
Query:  187 KNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINCIDFLEPSLANSVIAL------THGKGASS------------------QMMLKETKDPEDGLKTCIRCLNLLERQNKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSVNAGETEYSLQLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFASSYLADNMFTLPGLPSQDKY 834
            + +EK+ VPW  D++V FCP C  KF++  RR HCRLCG + C  C++ +   LAN + +       TH   + S                    +L E  D  D ++ C  C + L ++ +   +K     +VK YE+++  M+  D   P++++MA S+NAGET YSL+ A + R ++ K YE I++LSK I  LG+  +  P P   +LQ  IR  A+ ++ + +  L  LP+++++
Sbjct:  145 RAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDD--DRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMAASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRYSATLFVQEKLLGLMSLPTKEQF 382
The following BLAST results are available for this feature:
BLAST of TCONS_00065219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBNS58.844e-3632.08Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2[more]
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