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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=transcript|length=2715bpRun BLAST on NCBI protein sequence of TCONS_00065215-protein >TCONS_00065215-protein ID=TCONS_00065215-protein|Name=TCONS_00065215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp MNRLIIRHARQIVQICTNREPMICDPKLLQNVSVLECNDVIKGYSIVVDSRun BLAST on NCBI transcript from alignment at scaffold_433:452172..461908- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=transcript|length=9737bp|location=Sequence derived from alignment at scaffold_433:452172..461908- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_433:452172..461908- >TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=CDS|length=11745bp|location=Sequence derived from alignment at scaffold_433:452172..461908- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065215 vs. Swiss-Prot (Human)
Match: HUTI (Probable imidazolonepropionase OS=Homo sapiens GN=AMDHD1 PE=1 SV=2) HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0 Identity = 261/427 (61.12%), Postives = 334/427 (78.22%), Query Frame = 1
Query: 148 LIIRHARQIVQICTNREPMICDPKLLQNVSVLECNDVIKGYSIVVDSNGNIADVGSDDVIGEKYKDHTFEKDIDATGKCVLPGFIDGHTHPVWTGDRVHEFAMKLSGATYMDIHKTGGGIGFTVQNVHQSSEEELYQSFVQRLNCMIKCGTTTVEAKSGYGLDAPNEIKMLRVIHRAKKELKETIDISCTYCGAHSIPKGKTMEEATDDVINNQIPQISELVKNGELSVDNIDVFCEKGVFDTDATRRILEAGKAHNMAINFHGDELHPMQSGELGAELGARAISHLEEVSDKGIVAMSDKKVAAVLLPTTAYILRLQPPPARKMIDQGVPVALGSDFNPNAFCYSMPTVMHLACCLLRMSMTEALIGATLNSAYSVGLSETHGSIEVGKVGDLVIVDAPRWEHIIYQFAAHDQTIDYVIKRGIVSY 1428
L++ +A+Q+V +C E + L ++++VLE G S+VV +G I +G DVI ++ TFE+ ID +GKC+LPG +D HTHPVW G+RVHEFAMKL+GATYM+IH+ GGGI FTV+ Q++EEEL++S QRL CM++ GTT VE KSGYGLD E+KMLRVI RA++EL I IS TYCGAHS+PKGKT EA DD+INN +P++ EL +NGE+ VDNIDVFCEKGVFD D+TRRIL+ GK + INFHGDELHPM++ ELGAELGA+AISHLEEVSD+GIVAM+ + +A+LLPTTAY+LRL+ P ARKM+D+GV VALGSDFNPNA+C+SMP VMHLAC +RMSM EAL AT+N+AY++G S THGS+EVGK GDL+I+++ RWEH+IYQF H + I+YVI +G + Y
Sbjct: 7 LLLENAQQVVLVCARGERFLARDAL-RSLAVLE------GASLVVGKDGFIKAIGPADVIQRQFSGETFEEIIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIHFTVERTRQATEEELFRSLQQRLQCMMRAGTTLVECKSGYGLDLETELKMLRVIERARRELD--IGISATYCGAHSVPKGKTATEAADDIINNHLPKLKELGRNGEIHVDNIDVFCEKGVFDLDSTRRILQRGKDIGLQINFHGDELHPMKAAELGAELGAQAISHLEEVSDEGIVAMATARCSAILLPTTAYMLRLKQPRARKMLDEGVIVALGSDFNPNAYCFSMPMVMHLACVNMRMSMPEALAAATINAAYALGKSHTHGSLEVGKQGDLIIINSSRWEHLIYQFGGHHELIEYVIAKGKLIY 424 The following BLAST results are available for this feature:
BLAST of TCONS_00065215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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