TCONS_00065209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065209
Unique NameTCONS_00065209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065209 ID=TCONS_00065209|Name=TCONS_00065209|organism=Clytia hemisphaerica|type=transcript|length=1299bp
taaaaatataaatataaatttttattaaGTGTAGAaccataaacaaaaaa
atacaatggATGTAAGCGATTATTCTGATGCAGAAATAAAGCAATCTCTG
CAAGAATTTGGCGTAACATGTGGGCCATTAACTTCTACAACAAGAGCTGT
TTATGCAAAGAAGCTGTCCAAATTGATTGCAACATCATCATCACAAAGTG
AACCAGAAGTTGTGCAGGCAAGACAAACCATCTCTGATGAGGATTTTTAT
TCTTCTGAAGAAACAGTGACCACAAGAAGTAGAAGTAGCCAGcagatcaa
aaaaattattgagcTTGACACAACTGATGCACCAATGCCAAAGTTGACTA
CCAATATCTCAACACCTCGCTCTTACACACCAGACGGTTCTAATTTAACA
CGCAGGCCCCTTAGTACACCACACCGCCCAGCAACTCAAGTTAGCAGCAT
ACAGAAAACATCTACGTCTGCTGTAACCAATTCTACCGGAAACAAGAAAG
GAGTTTTATCATATTGTCGTTATTTACTACCTGTCCTTGTGGTTTTGATT
TTACTCATGCTGTTAGTTTACTATCACATGGAGGAAGGCGGCTTCAAAGA
ACTTACCAGCcgatttaaataaaaaaattcatttgtcATGCTGCCAGTCT
CAATTACTGCCAGATCTTTCCAGTCTTAGTTTGATAAACCTAACTAGATT
TTGATCCTTGGTAACTAATATGGATGTAACCGAACATcctatttattatt
ttattttgcaCAGAAGATATCATTGATCGACTTCCAGTTTGTTATATATA
CTGTAACTCTTCTCCAGATTAGAAAGTCAAAGGaagtgaaaggaaagaaa
aaatttttagttATTTGTTGGTGAGATTTGAGAATcttaaaaagtctaat
tttagCAGTACCCACCCCCTTGAATTCTTTATCATCACTATTGATCATAT
TTTCCACGCCAATTTGCTTTATAAAACTCTTTTGTTATTTGCTTTTTgaa
ccaaaatatttggcaatataatgttaaaaattttaaagaaattatagtat
tttatacttttaaagcagtcaattttaaaaatctaaaagagGTGTAtatc
ttaaaaaatattttcttcactttAGAGATGTAGTATTTGGTTTAGTAGTA
GTatttgtacatatttttttcaaaccttttttttttgtcatttgtgACGT
TTATTGTATTAGAAGGAGAGATAATaatgtttcactttttgttttatttt
ttttgttcttttgttttcttttcatttggtaCTTAGGTGAggtcaattt
Run BLAST on NCBI

protein sequence of TCONS_00065209-protein

>TCONS_00065209-protein ID=TCONS_00065209-protein|Name=TCONS_00065209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MDVSDYSDAEIKQSLQEFGVTCGPLTSTTRAVYAKKLSKLIATSSSQSEP
EVVQARQTISDEDFYSSEETVTTRSRSSQQIKKIIELDTTDAPMPKLTTN
ISTPRSYTPDGSNLTRRPLSTPHRPATQVSSIQKTSTSAVTNSTGNKKGV
LSYCRYLLPVLVVLILLMLLVYYHMEEGGFKELTSRFK
Run BLAST on NCBI

transcript from alignment at scaffold_433:356382..358343-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065209 ID=TCONS_00065209|Name=TCONS_00065209|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at scaffold_433:356382..358343- (Clytia hemisphaerica)
TAAAAATATAAATATAAATTTTTATTAAGTGTAGAACCATAAACAAAAAA
ATACAATGGATGTAAGCGATTATTCTGATGCAGAAATAAAGCAATCTCTG
CAAGAATTTGGCGTAACATGTGGGCCATTAACTTCTACAACAAGAGCTGT
TTATGCAAAGAAGCTGTGTAAGTATTATATTCTTTCTTTCACCTGGAATT
CACTATTGATATTATTTTAATAAAAATTGGTAAGTTGTTTTGGCAAAAAA
CAACAACAAAAATTCAGCAACATCTTTATTAACTTCATGTAAATTTGCAA
AAAAAACTTTTTTTTACGAAAACATTAAAGTTATTGACCAATAACATTTT
ATTTTAACCTTGTCCCAAATAAATTTCTGAAAATTTTAATTTGTAGCATT
AAATTTGACAAATTTCTGTTTATCTGATATTTTAGCCAAATTGATTGCAA
CATCATCATCACAAAGTGAACCAGAAGTTGTGCAGGCAAGACAAACCATC
TCTGATGAGGATTTTTATTCTTCTGAAGAAACAGTGACCACAAGAAGTAG
AAGTATGATTTTAAAGTTTTATTCCATGATGATAAAATGGGTTTAAGCTA
AATGATTTAATCCTAACTTAATGCAATAAGGATTTTTCTTTAAATGTTAC
AGTAGGTTCTAAAAATCAGAGATAATTCTTGACAAAATTCAAATTAATTT
ACTAATGTATTATTAAATGTTTTACCTCGGTTTACTGACCCTCTGCAGCA
TTCTTCAGTGTTATCCTTAAAATTACCAATCGTGCATTCTCACTCCAACT
TTTCTGAGTTTTTGAAACATTCCCTTCCAAATCTAGCCTTTCAAAGCGCC
TGTCTGTTGAAAAAATACTTACAATACCATGTTCTCCATGGTTGCTTTAT
GAGAGGACTTTCATGGCCACTAAATAATTTCTGTACATTTTCTCAAGGTA
GCCAGCAGATCAAAAAAATTATTGAGCTTGACACAACTGATGCACCAATG
CCAAAGTTGACTACCAATATCTCAACACCTCGCTCTTACACACCAGACGG
TTCTAATTTAACACGCAGGCCCCTTAGTACACCACACCGCCCAGCAACTC
AAGTTAGCAGCATACAGAAAACATCTACGTCTGCTGTAACCAATTCTACC
GGAAACAAGAAAGGAGTTTTATCATATTGTCGTTATTTACTACCTGTCCT
TGTGGTTTTGATTTTACTCATGCTGTTAGTTTACTATCACATGGAGGAAG
GCGGCTTCAAAGAACTTACCAGCCGATTTAAATAAAAAAATTCATTTGTC
ATGCTGCCAGTCTCAATTACTGCCAGATCTTTCCAGTCTTAGTTTGATAA
ACCTAACTAGATTTTGATCCTTGGTAACTAATATGGATGTAACCGAACAT
CCTATTTATTATTTTATTTTGCACAGAAGATATCATTGATCGACTTCCAG
TTTGTTATATATACTGTAACTCTTCTCCAGATTAGAAAGTCAAAGGAAGT
GAAAGGAAAGAAAAAATTTTTAGTTATTTGTTGGTGAGATTTGAGAATCT
TAAAAAGTCTAATTTTAGCAGTACCCACCCCCTTGAATTCTTTATCATCA
CTATTGATCATATTTTCCACGCCAATTTGCTTTATAAAACTCTTTTGTTA
TTTGCTTTTTGAACCAAAATATTTGGCAATATAATGTTAAAAATTTTAAA
GAAATTATAGTATTTTATACTTTTAAAGCAGTCAATTTTAAAAATCTAAA
AGAGGTGTATATCTTAAAAAATATTTTCTTCACTTTAGAGATGTAGTATT
TGGTTTAGTAGTAGTATTTGTACATATTTTTTTCAAACCTTTTTTTTTTG
TCATTTGTGACGTTTATTGTATTAGAAGGAGAGATAATAATGTTTCACTT
TTTGTTTTATTTTTTTTGTTCTTTTGTTTTCTTTTCATTTGGTACTTAGG
TGAGGTCAATTT

Coding sequence (CDS) from alignment at scaffold_433:356382..358343-

>TCONS_00065209 ID=TCONS_00065209|Name=TCONS_00065209|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_433:356382..358343- (Clytia hemisphaerica)
GTAGCCAGCAGATCAAAAAAATTATTGAGCTTGACACAACTGATGCACCA
ATGCCAAAGTTGACTACCAATATCTCAACACCTCGCTCTTACACACCAGA
CGGTTCTAATTTAACACGCAGGCCCCTTAGTACACCACACCGCCCAGCAA
CTCAAGTTAGCAGCATACAGAAAACATCTACGTCTGCTGTAACCAATTCT
ACCGGAAACAAGAAAGGAGTTTTATCATATTGTCGTTATTTACTACCTGT
CCTTGTGGTTTTGATTTTACTCATGCTGTTAGTTTACTATCACATGGAGG
AAGGCGGCTTCAAAGAACTTACCAGCCGATTTAAATAACCAAATTGATTG
CAACATCATCATCACAAAGTGAACCAGAAGTTGTGCAGGCAAGACAAACC
ATCTCTGATGAGGATTTTTATTCTTCTGAAGAAACAGTGACCACAAGAAG
TAGAAATGGATGTAAGCGATTATTCTGATGCAGAAATAAAGCAATCTCTG
CAAGAATTTGGCGTAACATGTGGGCCATTAACTTCTACAACAAGAGCTGT
TTATGCAAAGAAGCTGTGTAGCCAGCAGATCAAAAAAATTATTGAGCTTG
ACACAACTGATGCACCAATGCCAAAGTTGACTACCAATATCTCAACACCT
CGCTCTTACACACCAGACGGTTCTAATTTAACACGCAGGCCCCTTAGTAC
ACCACACCGCCCAGCAACTCAAGTTAGCAGCATACAGAAAACATCTACGT
CTGCTGTAACCAATTCTACCGGAAACAAGAAAGGAGTTTTATCATATTGT
CGTTATTTACTACCTGTCCTTGTGGTTTTGATTTTACTCATGCTGTTAGT
TTACTATCACATGGAGGAAGGCGGCTTCAAAGAACTTACCAGCCGATTTA
AATAACCAAATTGATTGCAACATCATCATCACAAAGTGAACCAGAAGTTG
TGCAGGCAAGACAAACCATCTCTGATGAGGATTTTTATTCTTCTGAAGAA
ACAGTGACCACAAGAAGTAGAAATGGATGTAAGCGATTATTCTGATGCAG
AAATAAAGCAATCTCTGCAAGAATTTGGCGTAACATGTGGGCCATTAACT
TCTACAACAAGAGCTGTTTATGCAAAGAAGCTGTGTAGCCAGCAGATCAA
AAAAATTATTGAGCTTGACACAACTGATGCACCAATGCCAAAGTTGACTA
CCAATATCTCAACACCTCGCTCTTACACACCAGACGGTTCTAATTTAACA
CGCAGGCCCCTTAGTACACCACACCGCCCAGCAACTCAAGTTAGCAGCAT
ACAGAAAACATCTACGTCTGCTGTAACCAATTCTACCGGAAACAAGAAAG
GAGTTTTATCATATTGTCGTTATTTACTACCTGTCCTTGTGGTTTTGATT
TTACTCATGCTGTTAGTTTACTATCACATGGAGGAAGGCGGCTTCAAAGA
ACTTACCAGCCGATTTAAATAACCAAATTGATTGCAACATCATCATCACA
AAGTGAACCAGAAGTTGTGCAGGCAAGACAAACCATCTCTGATGAGGATT
TTTATTCTTCTGAAGAAACAGTGACCACAAGAAGTAGAAATGGATGTAAG
CGATTATTCTGATGCAGAAATAAAGCAATCTCTGCAAGAATTTGGCGTAA
CATGTGGGCCATTAACTTCTACAACAAGAGCTGTTTATGCAAAGAAGCTG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040884XLOC_040884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065209-proteinTCONS_00065209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065209-exon-scaffold_433-1575043694:358177..358343TCONS_00065209-exon-scaffold_433-1575043694:358177..358343Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1575043694:357792..357908TCONS_00065209-exon-scaffold_433-1575043694:357792..357908Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1575043694:356382..357396TCONS_00065209-exon-scaffold_433-1575043694:356382..357396Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1510915933:358177..358343TCONS_00065209-exon-scaffold_433-1510915933:358177..358343Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1510915933:357792..357908TCONS_00065209-exon-scaffold_433-1510915933:357792..357908Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1510915933:356382..357396TCONS_00065209-exon-scaffold_433-1510915933:356382..357396Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1491911889:358177..358343TCONS_00065209-exon-scaffold_433-1491911889:358177..358343Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1491911889:357792..357908TCONS_00065209-exon-scaffold_433-1491911889:357792..357908Clytia hemisphaericaexon
TCONS_00065209-exon-scaffold_433-1491911889:356382..357396TCONS_00065209-exon-scaffold_433-1491911889:356382..357396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:356382..358343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
93.0884	92.0772	209.951	224.802	87.3916	69.3355	60.5094	65.3844	47.6971	44.8795	36.2075	30.1744	23.8982	23.6046	30.6802	31.3378	65.8006	64.2128	11.3833	15.7496	57.5579	53.8777	70.6455	69.927	68.3889	69.3627	50.4769	44.487	37.1738	38.6104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003887LEM_dom
IPR011015LEM/LEM-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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