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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065194 ID=TCONS_00065194|Name=TCONS_00065194|organism=Clytia hemisphaerica|type=transcript|length=1052bp
ATCACCGCTAGTGAAAGCGTGCTGTTATTTGCGAGTAGAAGATATCTAAC
TAACTAAGATATTTATAAGGTAAAATACCTAGAATTTCAGGTTGGTTGAA
TCAATGATTAGATATCTGCTAGATAAACATAATGTCAGTCGTGAAGATTT
TGGTAGAATTGGTCCTCATTTCAACATGGTCAACCCTGAAAACGCTAGGT
GAATGTAACATCAATCAAGGTCAATTGCTGGATGTTTTGTATCGGCGAAC
CGAATCGTATACCGTATCTTTTGACATCAAGCCTCTATCTGTTCAACCAT
CCTGGAGTAACATTCTACATTTCACGATTGGCGATAATCGCGGCTCATTC
GGCGACAGAGCGCCAGCTGTCTGGTTCATGAAGAACTCAACGGTTCTGTA
CATATGTAGTGACTTTTATTCATCCCTAAACAAATGCTCTAAAAGTAAAC
CTCTTGTAATTGGTCGATATCATCGACTGATTATTAAACAAAGAGATGTT
GGCTTGCGGTATTCTATATACTCCGCTTTTCTAGACGGGAAACATGTCCA
TCACTGGGCGAATTTCACCCCACGATGTTTTAGAGGCGTCAAAGTATACA
TGAGCAATCCATGGTACAAAGCAGCTTTGGCTACAATCAAGAATTTCAAG
TATACAAATGATAAAACCGAGCCTGTGATTTATTGTCCATAAGTGTCATT
GAGTTTAAAATCCGacgggctagagtagaatctctaacctttcccaggca
agaaaaagtgttATGCAACTTATTTCTCATTCAGAACGCGCCGTAATAAT
GACGATGGATTGtattgtttttgaggactgcatgttttgaaatctagcga
tagattttagttcaATCCAGTGTTTGTATAAAAGAGAGATGCGTGCGGGC
GTTATGGATTGGAAATAAGTggttcatttcccatccaggagtctcgagtc
tagcccttcgggcttgaaagtCAATGATAAGTGTATCATTAGCCTATGTA
AATATTGAGATTTATTTCTTAGCAATTATCTTAAGATTTAGTTAATGATA
TG Run BLAST on NCBI transcript from alignment at scaffold_433:59858..61480- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065194 ID=TCONS_00065194|Name=TCONS_00065194|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at scaffold_433:59858..61480- (Clytia hemisphaerica)
ATCACCGCTAGTGAAAGCGTGCTGTTATTTGCGAGTAGAAGATATCTAAC
TAACTAAGATATTTATAAGGTAAAATACCTAGAATTTCAGGTTGGTTGAA
TCAATGATTAGATATCTGCTAGATAAACATAATGTCAGTCGTGAAGATTT
TGGTAGAATTGGTCCTCATTTCAACATGGTCAACCCTGAAAACGCTAGGT
ATGTTGACTTTAAAACTTAGTTTTTGAAAGATTTTTTGTACTAGCATAAT
ATTGCCCCCCCCCCCACAGCGGCGGATCTGAAATTCATGCATTCCAGCAA
ATGTTCTTTCGAAATTCACCCATTCACGTGAAAATTCGGGGAAACATTTG
GAAATTGGGGAAACTTGTACAAAGAAATAGCTCAGACTCTAGACTGGGAA
TCCAGTCGTTTATAACGTTTTTGTTGAAAGCGGGAAATTTTTATGTCGGG
ATATGGTTAAAATAATTATGTATATATATATATTGATGCTCCTGACAAGT
TTTCTACTTCCTATTTTTTACTGAGTTAAGTCGTCTAGTATGCTAGACTT
CTCAGACTCGCACATTCACGCAATCAAAAAGTGAATTTTCACGTTCATAC
AAGTTTTTTCTATTCACGCATTCACGCTACCAGAAAAGCCCATTCACGCA
AACCGCTAGGGGGAGCTTTGAATGCAACTTTTTGATGGAGAAAGCTCAAA
AAGATTTAGTTTAATTCATATTTATACGATCTCTTGGCTAAAAAACTTCT
TCTATCATCTTTACTTAAGGTGAATGTAACATCAATCAAGGTCAATTGCT
GGATGTTTTGTATCGGCGAACCGAATCGTATACCGTATCTTTTGACATCA
AGCCTCTATCTGTTCAACCATCCTGGAGTAACATTCTACATTTCACGATT
GGCGATAATCGCGGCTCATTCGGCGACAGAGCGCCAGCTGTCTGGTTCAT
GAAGAACTCAACGGTTCTGTACATATGTAGTGACTTTTATTCATCCCTAA
ACAAATGCTCTAAAAGTAAACCTCTTGTAATTGGTCGATATCATCGACTG
ATTATTAAACAAAGAGATGTTGGCTTGCGGTATTCTATATACTCCGCTTT
TCTAGACGGGAAACATGTCCATCACTGGGCGAATTTCACCCCACGATGTT
TTAGAGGCGTCAAAGTATACATGAGCAATCCATGGTACAAAGCAGCTTTG
GCTACAATCAAGAATTTCAAGTATACAAATGATAAAACCGAGCCTGTGAT
TTATTGTCCATAAGTGTCATTGAGTTTAAAATCCGACGGGCTAGAGTAGA
ATCTCTAACCTTTCCCAGGCAAGAAAAAGTGTTATGCAACTTATTTCTCA
TTCAGAACGCGCCGTAATAATGACGATGGATTGTATTGTTTTTGAGGACT
GCATGTTTTGAAATCTAGCGATAGATTTTAGTTCAATCCAGTGTTTGTAT
AAAAGAGAGATGCGTGCGGGCGTTATGGATTGGAAATAAGTGGTTCATTT
CCCATCCAGGAGTCTCGAGTCTAGCCCTTCGGGCTTGAAAGTCAATGATA
AGTGTATCATTAGCCTATGTAAATATTGAGATTTATTTCTTAGCAATTAT
CTTAAGATTTAGTTAATGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065194-exon-scaffold_433-1575043694:61283..61480 | TCONS_00065194-exon-scaffold_433-1575043694:61283..61480 | Clytia hemisphaerica | exon |
| TCONS_00065194-exon-scaffold_433-1575043694:59858..60711 | TCONS_00065194-exon-scaffold_433-1575043694:59858..60711 | Clytia hemisphaerica | exon |
| TCONS_00065194-exon-scaffold_433-1510915933:61283..61480 | TCONS_00065194-exon-scaffold_433-1510915933:61283..61480 | Clytia hemisphaerica | exon |
| TCONS_00065194-exon-scaffold_433-1510915933:59858..60711 | TCONS_00065194-exon-scaffold_433-1510915933:59858..60711 | Clytia hemisphaerica | exon |
| TCONS_00065194-exon-scaffold_433-1491911889:61283..61480 | TCONS_00065194-exon-scaffold_433-1491911889:61283..61480 | Clytia hemisphaerica | exon |
| TCONS_00065194-exon-scaffold_433-1491911889:59858..60711 | TCONS_00065194-exon-scaffold_433-1491911889:59858..60711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:59858..61480 - |
Blast
The following BLAST results are available for this feature:
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