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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065179 ID=TCONS_00065179|Name=TCONS_00065179|organism=Clytia hemisphaerica|type=transcript|length=1645bp
cccgattttctgaaaaatcggattattgcgtgaaactcgaggaaaatttg
cgtgaatgcgtgaatttcgaaaaaaaattgcgtgattgcgtgaattgagg
gtccgctggggggggcctcaTGAGGGTACCACATATTTTCTAAAAACTCT
GttcaaagatggcggatgcAGGCTTGATCCAGGGTTTGTAAAGGTCAATG
AGCTCTGACTgtcaatttttctctttatctatttagaaataaaatatata
gACAATGAAACCATTTGAAAACTAAAAGATTCCTGAAGATTTTCATCACA
caataaaatgctgaaaaatcaAACTGCCATGGATCCTACACTTGTCACAG
CGTCAATGTATACTTTCGGTGGTATCGCAAACCTCATCGTCGTTTTAAAC
ATTCTCAAAAGATGGAGTGATCGATCGGTTAGCTTCTCTATATCATTTAG
TATTGGAGTGGTTTGTTTATTAACTTCATGTGGTAAAGCTATATTCGATA
TATATCAAGACAAATTTACACCTTACCAAGCTAAAGTCTTTCTATTCTGG
TACGTTGGCCAAATACATTTAATCACAAATGCAGTTCTGATATTTACTAT
ACAACGTGCCTTGACAGTCGTGGTACGACCACATTGGGTTCGAGTCACGG
TAACACGGAGGGCATCAGATAAATGTGTGACAATGCAATGGTTTTTGATG
ATGGTAATGTATTCTCCCGTATTGATGGTGCAGTTCTTGATGAAAAAGAC
AGATCTGGAAGAGCTATTACTCGTTCTCAAAGACGTTGTGACACTAATAG
TCATTATCGAAGCTTTCGTTATCCTGATGTTAACTCTACTAATAATCATT
TGTTTAATAGTGAAAGGTAGACCTTTAGAACCAAATGAGATTCTGTGGGC
AGAAGAGGTTTGCTTACAAAGATATTGGatgtttttggtctttttctATT
TCATGATTTTACCAGATTTCGTGTTTTACTTTATCACGTGGTATCGGTCA
CCAACTTTAGATATGTTGAAATCAGTTTCTTGTTTTGGTATGGCTATGga
tttcattgttttctttatGGTGTTGAATTGAATATCTACACCCCCTCCCT
CTAGACGATCATTAGGTGAAATTCTACCGGTCGAGGGTGTCTTTGTATTT
GTCATTGATCTAGGGTCATAAAGCACTACAACACTGTCCATGAAAAATGG
AACGGATTTCAGGCTATTGAAAGGTATCGAATTCCTTAAGTAATTAAAGG
AGTAGTTAGCCATGAATCTAATCTAAGATTCATTTTATCGACTCAACGCC
CCCTCCCCCACTCCGGATCTAAAAACCCTCCATTCctccattttatgaat
tttgaaatactttcaaaaCCCCTTATTTTGCTTTATGGCCAAGAAATCAA
GTAAAGTGTGATACATCAAAGATGAAATTGCAGAACCCTCTCTCCAGTTC
CAGCTCCCTTTCCTagcaaattttaaaaaaagttaaagtacACCTCGTCC
TATCCGTTCATAAGATAGTAAGCCGCCCATAAACCCGCCCGTCCGTACAC
AACCGCCCATGCCACTCTTAGTCTTGAAATATAAACCCTTCCCTGATCTT
CGCCAGATAAGCCCTTTGAAGAATGCTTAGTAAAGAAAACTCTAG Run BLAST on NCBI transcript from alignment at scaffold_433:299557..301201+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065179 ID=TCONS_00065179|Name=TCONS_00065179|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at scaffold_433:299557..301201+ (Clytia hemisphaerica)
cccgattttctgaaaaatcggattattgcgtgaaactcgaggaaaatttg
cgtgaatgcgtgaatttcgaaaaaaaattgcgtgattgcgtgaattgagg
gtccgctggggggggcctcaTGAGGGTACCACATATTTTCTAAAAACTCT
GttcaaagatggcggatgcAGGCTTGATCCAGGGTTTGTAAAGGTCAATG
AGCTCTGACTgtcaatttttctctttatctatttagaaataaaatatata
gACAATGAAACCATTTGAAAACTAAAAGATTCCTGAAGATTTTCATCACA
caataaaatgctgaaaaatcaAACTGCCATGGATCCTACACTTGTCACAG
CGTCAATGTATACTTTCGGTGGTATCGCAAACCTCATCGTCGTTTTAAAC
ATTCTCAAAAGATGGAGTGATCGATCGGTTAGCTTCTCTATATCATTTAG
TATTGGAGTGGTTTGTTTATTAACTTCATGTGGTAAAGCTATATTCGATA
TATATCAAGACAAATTTACACCTTACCAAGCTAAAGTCTTTCTATTCTGG
TACGTTGGCCAAATACATTTAATCACAAATGCAGTTCTGATATTTACTAT
ACAACGTGCCTTGACAGTCGTGGTACGACCACATTGGGTTCGAGTCACGG
TAACACGGAGGGCATCAGATAAATGTGTGACAATGCAATGGTTTTTGATG
ATGGTAATGTATTCTCCCGTATTGATGGTGCAGTTCTTGATGAAAAAGAC
AGATCTGGAAGAGCTATTACTCGTTCTCAAAGACGTTGTGACACTAATAG
TCATTATCGAAGCTTTCGTTATCCTGATGTTAACTCTACTAATAATCATT
TGTTTAATAGTGAAAGGTAGACCTTTAGAACCAAATGAGATTCTGTGGGC
AGAAGAGGTTTGCTTACAAAGATATTGGatgtttttggtctttttctATT
TCATGATTTTACCAGATTTCGTGTTTTACTTTATCACGTGGTATCGGTCA
CCAACTTTAGATATGTTGAAATCAGTTTCTTGTTTTGGTATGGCTATGga
tttcattgttttctttatGGTGTTGAATTGAATATCTACACCCCCTCCCT
CTAGACGATCATTAGGTGAAATTCTACCGGTCGAGGGTGTCTTTGTATTT
GTCATTGATCTAGGGTCATAAAGCACTACAACACTGTCCATGAAAAATGG
AACGGATTTCAGGCTATTGAAAGGTATCGAATTCCTTAAGTAATTAAAGG
AGTAGTTAGCCATGAATCTAATCTAAGATTCATTTTATCGACTCAACGCC
CCCTCCCCCACTCCGGATCTAAAAACCCTCCATTCctccattttatgaat
tttgaaatactttcaaaaCCCCTTATTTTGCTTTATGGCCAAGAAATCAA
GTAAAGTGTGATACATCAAAGATGAAATTGCAGAACCCTCTCTCCAGTTC
CAGCTCCCTTTCCTagcaaattttaaaaaaagttaaagtacACCTCGTCC
TATCCGTTCATAAGATAGTAAGCCGCCCATAAACCCGCCCGTCCGTACAC
AACCGCCCATGCCACTCTTAGTCTTGAAATATAAACCCTTCCCTGATCTT
CGCCAGATAAGCCCTTTGAAGAATGCTTAGTAAAGAAAACTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065179-exon-scaffold_433-1491911889:299557..301201 | TCONS_00065179-exon-scaffold_433-1491911889:299557..301201 | Clytia hemisphaerica | exon |
| TCONS_00065179-exon-scaffold_433-1510915933:299557..301201 | TCONS_00065179-exon-scaffold_433-1510915933:299557..301201 | Clytia hemisphaerica | exon |
| TCONS_00065179-exon-scaffold_433-1575043694:299557..301201 | TCONS_00065179-exon-scaffold_433-1575043694:299557..301201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:299557..301201 + |
Blast
The following BLAST results are available for this feature:
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