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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065157 ID=TCONS_00065157|Name=TCONS_00065157|organism=Clytia hemisphaerica|type=transcript|length=2510bp
ttttgttttatttttgtttttgttttaatttttttttcaaaaaattttga
aatgaaattaatttgattttttggcaATTGCTCAAAACTACTATACTCCG
AAACCACCTATGGATTTTCCCTATTGACAAGGGAAATTCCCATCGTAGCA
TAACAAACAAATAATTTCACGTGTGCGCGCACATCGTCTCTCTTTTCACT
CAAAACTCAAAAGACGTTGGTAGCAAAATGAGAAGATGGAAATCGATTGG
TTTGATGACTGTAATCTAAAAACCGACCTTCTGAAATATGTCAAGCAAAA
TATGAAACGAAGTGAAATTTTGGACTATGTTGAACGAGATTTCCCCATGT
ACAATTGGAGCTTGAGAACTTTAGATAGAAGGCTTAGAGGCTTTGATATT
TATTATAATGATTTCAGTCTAAATGTAGAAGAGGTTGAAACTATTCTACG
CCAAGAACTGAACGGACCTGGAAAATTACTTGGGTATCGTGCAATGCATC
TCAAGTTGCGACAAAAATACGATATAAAAATACCGCGTGATTACGTATAC
GAGTTGATGCACGAAATAAACCCAGAGCTGATGAAGGACAGACAGCcttg
cttaaaaaagaaaaaaaagcggAAACACTTTGTGACGAAAGGACCAGACT
GGGTTTTTTCGCTGGACGGGCATGATAAATTAATGGGTTACCAAAACTCG
ACATTCCCCCTGGCAATTTATGGCTGTATAGACACAGCGAGTAGAAAGAT
AATGTTTCTCAAAGTCTGGGTTACGAACTCAAAGCCACAAGTGATTGGCC
GATGGTATACTGAATTTCTACGTGAAAATCAAATTGTCCCAGAATATTTA
AGAATTGATAAGGGAACTGAGACCACGACCATGGCCGAGATTCACTGTCA
TCTAAGACAAGAACATGGTGACTTAGAAGACTCGACATCATCAATTATAT
TTGGCCCTTCGACATCTAATCAGGCATGTTATTTATAATCTgaagttttt
ttctcttttaacaCACTAAATCTTTCTCTTTTAAAAACTATTTACAAGAT
CAAAACTTTTCATAAGTAAAATATCACCATGCAATATCACCAGTACAAGG
AATTTTCAGGGAATAATTGCTAACTGATTTCTATGATTTTGATATAACAG
ATTGAACGTTGGTGGAGAGAGCTCCATGATCGTTTGGAGAAGTTTTTCAA
AGCTGGTCTTTCCTGGCTTAAAGACGAAAATCACTACGACCCTCATTGTG
CACAAGATAGGTTAGTTGTTAAAGTAAATTTAATCTACATAGAAATAtac
acttttaaaaaaattgacctCTTAAAAAAGATATGCCAAAATGTAATATC
TGCTTGTTTGTTAACCCTAtctgccggggggggggggggggNTTAACCCT
ATCTGCCGGGGGGGGGGTCTTGGTTTTTTTCTCCTTTGAATTTTAACCGC
TTGCccaattcttttcaaatttcttgaCTTCTCTACAAATTCAAATATTA
CAGTCTGAGTGGCTGCAGATTCAACGATAACCGCCCAAaatgcaaaattt
aaaaaaaatatttttaaaattttaaattactaTAAAATCTGAACCACTAA
TAACTGCCCATTTATGAGTAACTACAGAAAACAGAAGTAAAAAAGCTTAT
TTCTACAAAGATCtgtctttttgaaaatacaGCCTAGTATTTTCCTCCAT
TCCGGTCAATTTTTTTGGCATGTGAAAATGACCCAAATaaaggaaaattt
ggaaaaaaatgtgcaAACTTCTTTGTATACAAAGTCTCTATGTACCAAAT
TCATGCCAAAACAGTCTTGAGTTTGGGGGTTCCGGGAAGCCCCTCCCCGG
GCAACACCAGACCCCAAATAACCCAGGGCAGATAGGGttaaagtgaaata
aaaataataaaaatagctaaaaaataaaaaatagctgAGTAACTAAAAAA
AATAGACCTTAAAATAAATGTTGTATCTACTCGTTTGTCgaacttaaata
aaaaaagctaaatAATTGAAAGTAAAAGCTAAAAACAAATCGAAAACAGT
TGTCAAAACTAAAAAGCCAActgaagaacaaaataaaacaacaataaGAC
CAAGAAGaataaattttccattttttagagATATGTTGGCATTTGTTATG
GTTCCCTTGGTTCAAAGACATTTGGACGAATTCAAAGATCTCATTTGGAA
CCCCCACAGAATAAGACACCAAAGAGACACATACATGGCTGATGGAGTAC
CAAACCATATGTATGATTTTCCCGCCAAATACTCGATGGAACAATGTGGA
AAACCACTCAACAAAGACACACTTGATGAAGCTGTTCAAATTACAGGAGT
TATGGATTATGGAATTGACTTTCTTCTCCCAGATCAACGAAACCATTACC
AGCAGTTCGTGAAAAATACTGTTACAGAATCTAATTATGTTCAAAGTTAT
CTAGATCTTAAATATAATCAAGCTTAGTATTTGTTTTACTAAATGAAATG
TTATATAAAT Run BLAST on NCBI transcript from alignment at scaffold_433:80456..83851+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065157 ID=TCONS_00065157|Name=TCONS_00065157|organism=Clytia hemisphaerica|type=transcript|length=3396bp|location=Sequence derived from alignment at scaffold_433:80456..83851+ (Clytia hemisphaerica)
ttttgttttatttttgtttttgttttaatttttttttcaaaaaattttga
aatgaaattaatttgattttttggcaATTGCTCAAAACTACTATACTCCG
AAACCACCTATGGATTTTCCCTATTGACAAGGGAAATTCCCATCGTAGCA
TAACAAACAAATAATTTCACGTGTGCGCGCACATCGTCTCTCTTTTCACT
CAAAACTCAAAAGACGTTGGTAGCAAAATGAGAAGATGGAAATCGATTGG
TTTGATGACTGTAATCTAAAAACCGACCTTCTGAAATATGTCAAGCAAAA
TATGAAACGAAGTGAAATTTTGGACTATGTTGAACGAGATTTCCCCATGT
ACAATTGGAGCTTGAGAACTTTAGATAGAAGGCTTAGAGGCTTTGATATT
TATTATAATGATTTCAGTCTAAATGTAGAAGAGGTTGAAACTATTCTACG
CCAAGAACTGAACGGACCTGGAAAATTACTTGGGTATCGTGCAATGCATC
TCAAGTTGCGACAAAAATACGATATAAAAATACCGCGTGATTACGTATAC
GAGTTGATGCACGAAATAAACCCAGAGCTGATGAAGGACAGACAGCcttg
cttaaaaaagaaaaaaaagcggAAACACTTTGTGACGAAAGGACCAGACT
GGGTTTTTTCGCTGGACGGGCATGATAAATTAATGGGTTACCAAAACTCG
ACATTCCCCCTGGCAATTTATGGCTGTATAGACACAGCGAGTAGAAAGAT
AATGTTTCTCAAAGTCTGGGTTACGAACTCAAAGCCACAAGTGATTGGCC
GATGGTATACTGAATTTCTACGTGAAAATCAAATTGTCCCAGAATATTTA
AGAATTGATAAGGGAACTGAGACCACGACCATGGCCGAGATTCACTGTCA
TCTAAGACAAGAACATGGTGACTTAGAAGACTCGACATCATCAATTATAT
TTGGCCCTTCGACATCTAATCAGGCATGTTATTTATAATCTgaagttttt
ttctcttttaacaCACTAAATCTTTCTCTTTTAAAAACTATTTACAAGAT
CAAAACTTTTCATAAGTAAAATATCACCATGCAATATCACCAGTACAAGG
AATTTTCAGGGAATAATTGCTAACTGATTTCTATGATTTTGATATAACAG
ATTGAACGTTGGTGGAGAGAGCTCCATGATCGTTTGGAGAAGTTTTTCAA
AGCTGGTCTTTCCTGGCTTAAAGACGAAAATCACTACGACCCTCATTGTG
CACAAGATAGGTTAGTTGTTAAAGTAAATTTAATCTACATAGAAATAtac
acttttaaaaaaattgacctCTTAAAAAAGATATGCCAAAATGTAATATC
TGCTTGTTTGTTAACCCTAtctgccggggggggggggggggNTTAACCCT
ATCTGCCGGGGGGGGGGTCTTGGTTTTTTTCTCCTTTGAATTTTAACCGC
TTGCccaattcttttcaaatttcttgaCTTCTCTACAAATTCAAATATTA
CAGTCTGAGTGGCTGCAGATTCAACGATAACCGCCCAAaatgcaaaattt
aaaaaaaatatttttaaaattttaaattactaTAAAATCTGAACCACTAA
TAACTGCCCATTTATGAGTAACTACAGAAAACAGAAGTAAAAAAGCTTAT
TTCTACAAAGATCtgtctttttgaaaatacaGCCTAGTATTTTCCTCCAT
TCCGGTCAATTTTTTTGGCATGTGAAAATGACCCAAATaaaggaaaattt
ggaaaaaaatgtgcaAACTTCTTTGTATACAAAGTCTCTATGTACCAAAT
TCATGCCAAAACAGTCTTGAGTTTGGGGGTTCCGGGAAGCCCCTCCCCGG
GCAACACCAGACCCCAAATAACCCAGGGCAGATAGGGttaaagtgaaata
aaaataataaaaatagctaaaaaataaaaaatagctgAGTAACTAAAAAA
AATAGACCTTAAAATAAATGTTGTATCTACTCGTTTGTCgaacttaaata
aaaaaagctaaatAATTGAAAGTAAAAGCTAAAAACAAATCGAAAACAGT
TGTCAAAACTAAAAAGCCAActgaagaacaaaataaaacaacaataaGAC
CAAGAAGaataaattttccattttttagagATATGTTGGCATTTGTTATG
GTTCCCTTGGTTCAAAGACATTTGGACGAATTCAAAGATCTCATTTGGAA
CCCCCACAGAATAAGACACCAAAGAGACACATACATGGCTGATGGAGTAC
CAAACCATATGTATGATTTTCCCGCCAAATACTCGATGGAACAATGTGGT
ATGTGCTTTTATtcacttttcagaaaaattataTTCTCTAGTATCCTTCA
AGGGTACTCTTTTGTGTCTAATTGTAGGGGGGTTTAATAAGCGGAGGGGA
TGGGTGGTCTGGGAAAAAATCCACAAAATGGGGGGGGTGACAATAAAGTG
ATATTGGAGTGATTTTAGTGAttttccctaggaaaatgaaggtttttggc
ACTTTTAGGCAATATCAAGTCAAAAAGTCGTAAAATGAGGGGGGGTCATA
ATAAAGTGAGATTGGGggtgaaaaatcagaaaaattacaaagtgaCCCCC
CTACCTGCCCCTACAATTAGGGACAAAAGAGTACAAACTTttatagaaac
tttttttcgcggtttttggCCTAACCGTAAAATTTATATGAGAAAAATTA
TTGTGAAATAATCCATACACCCATATCAAATCGgcaataactttttaaaa
tccCTTTAACACAGTTTAACATTTCACATTTTAGGAAAACCACTCAACAA
AGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGGATTATGGAA
TTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAGTTCGTGAAA
AATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGATCTTAAATA
TAGTCAAGcttagtattttttttactaaatgaaatgTTATATAAAGTTTT
AATATATAACctagaacaaaaataaaatcgaGTAAAATATAAACGTAAGA
AATTGCTTCAAACAGTTGTGTAGTTNTGTAAAATTTATATGAGAAAAGTT
ATTGTGAAATAATCCATACACCCATATCAAATCGgcaataactttttaaa
atccCTTAACACAGTTTAACATTTCACATTTTAGGAAAACCACTCAACAA
AGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGGATTATGGAA
TTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAGTTCGTGAAA
AATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGATCTTAAATA
TAATCAAGCTTAGTATTTGTTTTACTAAATGAAATGTTATATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065157-exon-scaffold_433-1491911889:80456..82753 | TCONS_00065157-exon-scaffold_433-1491911889:80456..82753 | Clytia hemisphaerica | exon |
| TCONS_00065157-exon-scaffold_433-1510915933:80456..82753 | TCONS_00065157-exon-scaffold_433-1510915933:80456..82753 | Clytia hemisphaerica | exon |
| TCONS_00065157-exon-scaffold_433-1575043694:80456..82753 | TCONS_00065157-exon-scaffold_433-1575043694:80456..82753 | Clytia hemisphaerica | exon |
| TCONS_00065157-exon-scaffold_433-1491911889:83640..83851 | TCONS_00065157-exon-scaffold_433-1491911889:83640..83851 | Clytia hemisphaerica | exon |
| TCONS_00065157-exon-scaffold_433-1510915933:83640..83851 | TCONS_00065157-exon-scaffold_433-1510915933:83640..83851 | Clytia hemisphaerica | exon |
| TCONS_00065157-exon-scaffold_433-1575043694:83640..83851 | TCONS_00065157-exon-scaffold_433-1575043694:83640..83851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:80456..83851 + |
Blast
The following BLAST results are available for this feature:
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