TCONS_00065149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065149
Unique NameTCONS_00065149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065149 ID=TCONS_00065149|Name=TCONS_00065149|organism=Clytia hemisphaerica|type=transcript|length=924bp
GTCATGGTTTTAATGCTTTAATGCTAATGATTAGTAAAAGTTTTATTCAA
CACAACATCTTGATTAgcagaaaattaagaaaactaATTCCAGTAGTTGT
aagattttttcgttttatttcAGTTTCAAAAGAATATATTCATAGATCTA
AACTATGAAAAATAATGAGACTTTGGCTATCATTTCTATTCATCACATCA
GTCCAGAGTGTTTTTACCTTTGGTGATACCCCAAATACAGTCGAGACATT
GGATATTTCAAAATACATTGGGTCATGGTATCAGGTACTTTACAACCAGT
TTGTCGCCAAATCAAAAGAACCTGACCAATTATGTGTTGTGGTTAAATAT
GTCGCTGTTGACAATTCATCATTTTCCAGTACACAATATTCAAGACGTCG
AAGTCCCTTTGGTTCTGAAATGAAAACAGATGCAAAGATTGTTCGACCTG
ACATCAAAGATCCTGGTTCATTCCAGGTCTTGGTCAGTGGAGCACCTTAT
CCGGAACCATATTTGGTGATCAAACTTGGACCTGTAAACAAAGAGAGTGG
ACTATATGAATATTCTGTGGTCACAGATTCCAACGCTGTTTCATTGTATG
TTTATGCACGTGACTTACACAAATTCCATCATATTTACAAAAAGGAAGTT
GAACAGTTTTGTCATGATGCaggattttcgagttatttcaatCAGCCTTT
AGAATCACCTCAACCTCCACCATGCAAATATTATGATGATGATAGGGAAA
GGGATGTTGTTTTTGAGGATTTGCCACAAGTTATGGTACCTCCTTGATAT
TGATTATTTCAGACATCAACATATTTGCTGAGTCATATGATTACATGAAT
TGAGTTTGATTGAATAACACTTCTTGTTTCTTCGGATTATTGTTGTTAAT
CTGGCTGCACATAATGCTCAGATN
Run BLAST on NCBI

protein sequence of TCONS_00065149-protein

>TCONS_00065149-protein ID=TCONS_00065149-protein|Name=TCONS_00065149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MRLWLSFLFITSVQSVFTFGDTPNTVETLDISKYIGSWYQVLYNQFVAKS
KEPDQLCVVVKYVAVDNSSFSSTQYSRRRSPFGSEMKTDAKIVRPDIKDP
GSFQVLVSGAPYPEPYLVIKLGPVNKESGLYEYSVVTDSNAVSLYVYARD
LHKFHHIYKKEVEQFCHDAGFSSYFNQPLESPQPPPCKYYDDDRERDVVF
EDLPQVMVPP
Run BLAST on NCBI

transcript from alignment at scaffold_432:1032..3003+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065149 ID=TCONS_00065149|Name=TCONS_00065149|organism=Clytia hemisphaerica|type=transcript|length=1972bp|location=Sequence derived from alignment at scaffold_432:1032..3003+ (Clytia hemisphaerica)
GTCATGGTTTTAATGCTTTAATGCTAATGATTAGTAAAAGTTTTATTCAA
CACAACATCTTGATTAgcagaaaattaagaaaactaATTCCAGTAGTTGT
aagattttttcgttttatttcAGTTTCAAAAGAATATATTCATAGATCTA
AACTATGAAAAATAATGAGACTTTGGCTATCATTTCTATTCATCACATCA
GTCCAGAGTGTTTTTACCTTTGGTGATACCCCAAATACAGTCGAGACATT
GGATATTTCAAAATACATTGGGTCATGGTATCAGGTATTGCTTTGAAATT
AGTTTGATGGGTTTAATTCTAGtgattgcaattttttgatttatataaga
tctttattttccaaacagttatTACCTTTTATTGTAACCAATTCTCAAGG
AAACTAGCTACTGTAGTTCATGTTTTTGAGTTTACCATTGATGTTGGAAA
TAATTATGAAAATCCCTAGGAAGGCGCTGACCATTAAAATTATAGTTATA
GTTTTGTTCCAAGTTAAAAGCATTTATCTAGTTGAatgcttttgattttt
taatacaTATGCTTATTGATGAAACGCATTTTCCTCTATGTGAGTACTTA
AAGTAACAACTGATTCAATTTGTTTGGAGCTATTTTACATCTGTATTCCA
TCGAagataatattttcttttctatccCAGGTACTTTACAACCAGTTTGT
CGCCAAATCAAAAGAACCTGACCAATTATGTGTTGTGGTTAAATGTAAGA
GTTTCTTATAATCGTTCCCAATATTTATTATAAGCTAAAGACAAATCTGG
GTATGAAAACTACTGTAAATGCTGTGCTTAATAATTTAATGTTTATATTA
ACAAAATTTAGCCATAATTTTAAATAACATTTGTTTTTAATATGGTCCAc
tgaaaagtgtaaaaagtTAACTATGGGGTATATTGATGTTATGATGTGAA
AGGGAGAAATTAATTGAGAAAGGATCTAGGTATTTTCCTCAGGTTAagaa
aatataagaaattttttttcaaatctaaaaATCTTTAGATGTCGCTGTTG
ACAATTCATCATTTTCCAGTACACAATATTCAAGACGTCGAAGTCCCTTT
GGTTCTGAAATGAAAACAGATGCAAAGATTGTTCGACCTGACATCAAAGA
TCCTGGTTCATTCCAGGTCTTGGTCAGTGGAGCACCTTATCCGGAACCAT
gtaaattaaatattttcttattttcttctcTTTGTAAATCTTTGGACTGA
ATTTCAAAATACACAGCATAAAGTTAATACGAAAAAAGTCTAATTCTCAT
GTACGTGAGATTTAGATCTGAAGAGTTTCAGAATGCATTCACTCCCTTTT
AAGAACCTGAGACGTTGCAAATCCCTTTGTTTTCTAACTTTGAAATGCAT
GTAGTTCAATTTCTTTATATGTTAAtatgattttgagatttttctggATA
TCTTTCCAGGTATTTCTACTGACTGATTATCAATACTATTGTCACTACCT
GATATgtggaatatttttcatttttctttgaaattttatttttctttgtt
tactttagATTTGGTGATCAAACTTGGACCTGTAAACAAAGAGAGTGGAC
TATATGAATATTCTGTGGTCACAGATTCCAACGCTGTTTCATTGTATGTT
TATGCACGTGACTTACACAAATTCCATCATATTTACAAAAAGGAAGTTGA
ACAGTTTTGTCATGATGCaggattttcgagttatttcaatCAGCCTTTAG
AATCACCTCAACCTCCACCATGCAAATATTATGATGATGATAGGGAAAGG
GATGTTGTTTTTGAGGATTTGCCACAAGTTATGGTACCTCCTTGATATTG
ATTATTTCAGACATCAACATATTTGCTGAGTCATATGATTACATGAATTG
AGTTTGATTGAATAACACTTCTTGTTTCTTCGGATTATTGTTGTTAATCT
GGCTGCACATAATGCTCAGATN

Coding sequence (CDS) from alignment at scaffold_432:1032..3003+

>TCONS_00065149 ID=TCONS_00065149|Name=TCONS_00065149|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_432:1032..3003+ (Clytia hemisphaerica)
ATGAGACTTTGGCTATCATTTCTATTCATCACATCAGTCCAGAGTGTTTT
TACCTTTGGTGATACCCCAAATACAGTCGAGACATTGGATATTTCAAAAT
ACATTGGGTCATGGTATCAGGTACTTTACAACCAGTTTGTCGCCAAATCA
AAAGAACCTGACCAATTATGTGTTGTGGTTAAATATGTCGCTGTTGACAA
TTCATCATTTTCCAGTACACAATATTCAAGACGTCGAAGTCCCTTTGGTT
CTGAAATGAAAACAGATGCAAAGATTGTTCGACCTGACATCAAAGATCCT
GGTTCATTCCAGGTCTTGGTCAGTGGAGCACCTTATCCGGAACCATATTT
GGTGATCAAACTTGGACCTGTAAACAAAGAGAGTGGACTATATGAATATT
CTGTGGTCACAGATTCCAACGCTGTTTCATTGTATGTTTATGCACGTGAC
TTACACAAATTCCATCATATTTACAAAAAGGAAGTTGAACAGTTTTGTCA
TGATGCaggattttcgagttatttcaatCAGCCTTTAGAATCACCTCAAC
CTCCACCATGCAAATATTATGATGATGATAGGGAAAGGGATGTTGTTTTT
GAGGATTTGCCACAAGTTATGGTACCTCCTTGAATGAGACTTTGGCTATC
ATTTCTATTCATCACATCAGTCCAGAGTGTTTTTACCTTTGGTGATACCC
CAAATACAGTCGAGACATTGGATATTTCAAAATACATTGGGTCATGGTAT
CAGGTACTTTACAACCAGTTTGTCGCCAAATCAAAAGAACCTGACCAATT
ATGTGTTGTGGTTAAATATGTCGCTGTTGACAATTCATCATTTTCCAGTA
CACAATATTCAAGACGTCGAAGTCCCTTTGGTTCTGAAATGAAAACAGAT
GCAAAGATTGTTCGACCTGACATCAAAGATCCTGGTTCATTCCAGGTCTT
GGTCAGTGGAGCACCTTATCCGGAACCATATTTGGTGATCAAACTTGGAC
CTGTAAACAAAGAGAGTGGACTATATGAATATTCTGTGGTCACAGATTCC
AACGCTGTTTCATTGTATGTTTATGCACGTGACTTACACAAATTCCATCA
TATTTACAAAAAGGAAGTTGAACAGTTTTGTCATGATGCaggattttcga
gttatttcaatCAGCCTTTAGAATCACCTCAACCTCCACCATGCAAATAT
TATGATGATGATAGGGAAAGGGATGTTGTTTTTGAGGATTTGCCACAAGT
TATGGTACCTCCTTGAATGAGACTTTGGCTATCATTTCTATTCATCACAT
CAGTCCAGAGTGTTTTTACCTTTGGTGATACCCCAAATACAGTCGAGACA
TTGGATATTTCAAAATACATTGGGTCATGGTATCAGGTACTTTACAACCA
GTTTGTCGCCAAATCAAAAGAACCTGACCAATTATGTGTTGTGGTTAAAT
ATGTCGCTGTTGACAATTCATCATTTTCCAGTACACAATATTCAAGACGT
CGAAGTCCCTTTGGTTCTGAAATGAAAACAGATGCAAAGATTGTTCGACC
TGACATCAAAGATCCTGGTTCATTCCAGGTCTTGGTCAGTGGAGCACCTT
ATCCGGAACCATATTTGGTGATCAAACTTGGACCTGTAAACAAAGAGAGT
GGACTATATGAATATTCTGTGGTCACAGATTCCAACGCTGTTTCATTGTA
TGTTTATGCACGTGACTTACACAAATTCCATCATATTTACAAAAAGGAAG
TTGAACAGTTTTGTCATGATGCaggattttcgagttatttcaatCAGCCT
TTAGAATCACCTCAACCTCCACCATGCAAATATTATGATGATGATAGGGA
AAGGGATGTTGTTTTTGAGGATTTGCCACAAGTTATGGTACCTCCTTGAA
TGAGACTTTGGCTATCATTTCTATTCATCACATCAGTCCAGAGTGTTTTT
ACCTTTGGTGATACCCCAAATACAGTCGAGACATTGGATATTTCAAAATA
CATTGGGTCATGGTATCAGGTACTTTACAACCAGTTTGTCGCCAAATCAA
AAGAACCTGACCAATTATGTGTTGTGGTTAAATATGTCGCTGTTGACAAT
TCATCATTTTCCAGTACACAATATTCAAGACGTCGAAGTCCCTTTGGTTC
TGAAATGAAAACAGATGCAAAGATTGTTCGACCTGACATCAAAGATCCTG
GTTCATTCCAGGTCTTGGTCAGTGGAGCACCTTATCCGGAACCATATTTG
GTGATCAAACTTGGACCTGTAAACAAAGAGAGTGGACTATATGAATATTC
TGTGGTCACAGATTCCAACGCTGTTTCATTGTATGTTTATGCACGTGACT
TACACAAATTCCATCATATTTACAAAAAGGAAGTTGAACAGTTTTGTCAT
GATGCaggattttcgagttatttcaatCAGCCTTTAGAATCACCTCAACC
TCCACCATGCAAATATTATGATGATGATAGGGAAAGGGATGTTGTTTTTG
AGGATTTGCCACAAGTTATGGTACCTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040854XLOC_040854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065149-exon-scaffold_432-1491911889:1032..1315TCONS_00065149-exon-scaffold_432-1491911889:1032..1315Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1510915933:1032..1315TCONS_00065149-exon-scaffold_432-1510915933:1032..1315Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1575043694:1032..1315TCONS_00065149-exon-scaffold_432-1575043694:1032..1315Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1491911889:1712..1775TCONS_00065149-exon-scaffold_432-1491911889:1712..1775Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1510915933:1712..1775TCONS_00065149-exon-scaffold_432-1510915933:1712..1775Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1575043694:1712..1775TCONS_00065149-exon-scaffold_432-1575043694:1712..1775Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1491911889:2070..2231TCONS_00065149-exon-scaffold_432-1491911889:2070..2231Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1510915933:2070..2231TCONS_00065149-exon-scaffold_432-1510915933:2070..2231Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1575043694:2070..2231TCONS_00065149-exon-scaffold_432-1575043694:2070..2231Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1491911889:2590..3003TCONS_00065149-exon-scaffold_432-1491911889:2590..3003Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1510915933:2590..3003TCONS_00065149-exon-scaffold_432-1510915933:2590..3003Clytia hemisphaericaexon
TCONS_00065149-exon-scaffold_432-1575043694:2590..3003TCONS_00065149-exon-scaffold_432-1575043694:2590..3003Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065149-proteinTCONS_00065149-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_432supercontigscaffold_432:1032..3003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.2026	19.0159	6.12378	5.6064	3.61337	3.3841	11.2276	9.37644	17.6033	13.4142	20.2089	15.3004	52.3713	51.4408	63.8455	62.1966	33.2633	40.6988	86.7677	92.3416	33.9181	32.2925	37.8904	41.0684	31.7513	37.6087	25.5142	23.0179	87.6219	80.3512
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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