TCONS_00065147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065147
Unique NameTCONS_00065147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065147 ID=TCONS_00065147|Name=TCONS_00065147|organism=Clytia hemisphaerica|type=transcript|length=299bp
AtcagtttgttttttgaaatgtaTTAATCGAAATGCTTTCTTCTGAAGGC
AACTGAGTTTTTCAAGATTATTACAAGACAATTTTCCTACTGGGAGGTGG
TAGATTATATGGGAGTGGAACATTGAGTAGTAAAGGGAGAGCATAGTTTT
GTAGTCAAGATAGTGTCTAAGTTTTGCAAAGATACCAACTGATCTTGAGA
GCTTTTTGCATACTTCATTGGTGTTAGTATTCCAGTTGAGATTTTCATCT
AAGATTATTCCCAAGTATTTTGTGTTGTTTgttatttcaagtttttgtc
Run BLAST on NCBI

transcript from alignment at scaffold_431:72380..72678

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065147 ID=TCONS_00065147|Name=TCONS_00065147|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_431:72380..72678 (Clytia hemisphaerica)
gacaaaaacttgaaataacAAACAACACAAAATACTTGGGAATAATCTTA
GATGAAAATCTCAACTGGAATACTAACACCAATGAAGTATGCAAAAAGCT
CTCAAGATCAGTTGGTATCTTTGCAAAACTTAGACACTATCTTGACTACA
AAACTATGCTCTCCCTTTACTACTCAATGTTCCACTCCCATATAATCTAC
CACCTCCCAGTAGGAAAATTGTCTTGTAATAATCTTGAAAAACTCAGTTG
CCTTCAGAAGAAAGCATTTCGATTAAtacatttcaaaaaacaaactgaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040852XLOC_040852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065147-exon-scaffold_431-1491911889:72380..72678TCONS_00065147-exon-scaffold_431-1491911889:72380..72678Clytia hemisphaericaexon
TCONS_00065147-exon-scaffold_431-1510915933:72380..72678TCONS_00065147-exon-scaffold_431-1510915933:72380..72678Clytia hemisphaericaexon
TCONS_00065147-exon-scaffold_431-1575043694:72380..72678TCONS_00065147-exon-scaffold_431-1575043694:72380..72678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:72380..72678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.445637	0	5.30772	3.77481	1.51805	3.78981	0.995	3.28658	2.79128	3.66976	1.30881	0.543683	0.446982	0	0	0.90852	0.41839	1.11645	0.761081	1.11369	0.902554	2.05138	0.84515	0	2.15873	1.72789	0.873698	1.33524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top