TCONS_00065146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065146
Unique NameTCONS_00065146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065146 ID=TCONS_00065146|Name=TCONS_00065146|organism=Clytia hemisphaerica|type=transcript|length=682bp
AACAAATTTTGATTCTGTTTTTCCAGTAATTTTTATGTCAAGATCCAGGC
GAGGTTGAAAACTTATGCCCTTTTTAACGTAGATTCTAACACCTCCCTTG
GAGGCTTCAGTGAAACAGTCTGCAGGTTTATAGCCGGCCAGGCTAAGTNA
CACCTCCCTTGGAGGCTTCAGTGAAACAGTCTGCAGGTTTATAGCCGTCC
AGGCTAAGTGGATTGTCTCCATTTTTTAGTCCAGTTTCAGTAATtccaat
aaaatgaaaatctatatCACATTGTAGAAGTAATTGTTTTAGTTCTGTGA
AATGTAGGTTCAATGATGCAATATTTAAATGCAGAaaagaacttttgaaa
tttttatttgttaagGTAGTTTTGAGATCTGGAGTTGTATAATATTTACA
AGTGTGTAATAGTGGATTTTCATTTTCCTCTGAGGTATTTGCATAGAGAG
ACTCCATTGTTTCTAAGAATTTTCTACGTTCCTCATCAAGATCCTTATCA
AAATTAAGAGAAGTAGCAGCCTTACCTTTGTTTAGATGGGATATAGAATC
AGAAGAAATTGAATTGTAAGGGACATTGGATTGTATATACTTACGACAGC
TCCAGTTGTAGTCATTGTCATTGATATGGTTGTACTCATCGTCAGTCGTG
TTGTTGCATCGTGCATGTACCCAGGTGTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00065146-protein

>TCONS_00065146-protein ID=TCONS_00065146-protein|Name=TCONS_00065146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
CNTWVHARCNNTTDDEYNHINDNDYNWSCRKYIQSNVPYNSISSDSISHL
NKGKAATSLNFDKDLDEERRKFLETMESLYANTSEENENPLLHTCKYYTT
PDLKTTLTNKNFKSSFLHLNIASLNLHFTELKQLLLQCDIDFHFIGITET
GLKNGDNPLSLDGYKPADCFTEASKGGXT
Run BLAST on NCBI

transcript from alignment at scaffold_431:69577..70258

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065146 ID=TCONS_00065146|Name=TCONS_00065146|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at scaffold_431:69577..70258 (Clytia hemisphaerica)
TGCAACACCTGGGTACATGCACGATGCAACAACACGACTGACGATGAGTA
CAACCATATCAATGACAATGACTACAACTGGAGCTGTCGTAAGTATATAC
AATCCAATGTCCCTTACAATTCAATTTCTTCTGATTCTATATCCCATCTA
AACAAAGGTAAGGCTGCTACTTCTCTTAATTTTGATAAGGATCTTGATGA
GGAACGTAGAAAATTCTTAGAAACAATGGAGTCTCTCTATGCAAATACCT
CAGAGGAAAATGAAAATCCACTATTACACACTTGTAAATATTATACAACT
CCAGATCTCAAAACTACcttaacaaataaaaatttcaaaagttctttTCT
GCATTTAAATATTGCATCATTGAACCTACATTTCACAGAACTAAAACAAT
TACTTCTACAATGTGatatagattttcattttattggaATTACTGAAACT
GGACTAAAAAATGGAGACAATCCACTTAGCCTGGACGGCTATAAACCTGC
AGACTGTTTCACTGAAGCCTCCAAGGGAGGTGTNACTTAGCCTGGCCGGC
TATAAACCTGCAGACTGTTTCACTGAAGCCTCCAAGGGAGGTGTTAGAAT
CTACGTTAAAAAGGGCATAAGTTTTCAACCTCGCCTGGATCTTGACATAA
AAATTACTGGAAAAACAGAATCAAAATTTGTT

Coding sequence (CDS) from alignment at scaffold_431:69577..70258

>TCONS_00065146 ID=TCONS_00065146|Name=TCONS_00065146|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_431:69577..70258 (Clytia hemisphaerica)
TGCAACACCTGGGTACATGCACGATGCAACAACACGACTGACGATGAGTA
CAACCATATCAATGACAATGACTACAACTGGAGCTGTCGTAAGTATATAC
AATCCAATGTCCCTTACAATTCAATTTCTTCTGATTCTATATCCCATCTA
AACAAAGGTAAGGCTGCTACTTCTCTTAATTTTGATAAGGATCTTGATGA
GGAACGTAGAAAATTCTTAGAAACAATGGAGTCTCTCTATGCAAATACCT
CAGAGGAAAATGAAAATCCACTATTACACACTTGTAAATATTATACAACT
CCAGATCTCAAAACTACcttaacaaataaaaatttcaaaagttctttTCT
GCATTTAAATATTGCATCATTGAACCTACATTTCACAGAACTAAAACAAT
TACTTCTACAATGTGatatagattttcattttattggaATTACTGAAACT
GGACTAAAAAATGGAGACAATCCACTTAGCCTGGACGGCTATAAACCTGC
AGACTGTTTCACTGAAGCCTCCAAGGGAGGTGTNACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040851XLOC_040851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065146-exon-scaffold_431-1491911889:69577..70258TCONS_00065146-exon-scaffold_431-1491911889:69577..70258Clytia hemisphaericaexon
TCONS_00065146-exon-scaffold_431-1510915933:69577..70258TCONS_00065146-exon-scaffold_431-1510915933:69577..70258Clytia hemisphaericaexon
TCONS_00065146-exon-scaffold_431-1575043694:69577..70258TCONS_00065146-exon-scaffold_431-1575043694:69577..70258Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065146-proteinTCONS_00065146-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:69577..70258 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.386054	0.0274312	0.783579	1.1544	1.31541	1.56016	0.65991	1.17719	0.773705	0.372608	0.164584	0.295308	0.210463	0.200282	0.143249	0.686449	0.470593	0.99604	0.40052	0.410919	0	0	0	0.756627	0.523856	0.109762	0.00109307	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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