TCONS_00065128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065128
Unique NameTCONS_00065128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065128 ID=TCONS_00065128|Name=TCONS_00065128|organism=Clytia hemisphaerica|type=transcript|length=391bp
tttttttatttgggtAGGTGGTTTGAGGGCATGTCCCTGGTGCATAAGCG
TTGGTGAGCATTGCAAACGTCTAAGCAAAACGGTATATTTGGGTAATCGA
AAATTCCTCCCTGAAGACTCCGACCTTAGAAAGTCCACATATTTTCCTGA
TGGTAAAGAAGAGCACTCTAAGGCTCCCGAGGCTCTGACAAAAGACGAAC
AAATCGAACTTCGCCGTGAGTACGATGGAAAGCCTAACAAGACCCAaaag
gcaaaatttttaaaggaaaaggGAGTGAAAGGCGAATATCCATTCATGGA
GTTACCCTAtcataacctgataacagctgttcataattctcttacgtgca
cggtaaacctctgaaggcacttgaaaattatacatctgagg
Run BLAST on NCBI

protein sequence of TCONS_00065128-protein

>TCONS_00065128-protein ID=TCONS_00065128-protein|Name=TCONS_00065128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
FFIWVGGLRACPWCISVGEHCKRLSKTVYLGNRKFLPEDSDLRKSTYFPD
GKEEHSKAPEALTKDEQIELRREYDGKPNKTQKAKFLKEKGVKGEYPFME
LPYHNLITAVHNSLTCTVNL
Run BLAST on NCBI

transcript from alignment at scaffold_431:73294..74143+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065128 ID=TCONS_00065128|Name=TCONS_00065128|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_431:73294..74143+ (Clytia hemisphaerica)
tttttttatttgggtAGGTGGTTTGAGGGCATGTCCCTGGTGCATAAGCG
TTGGTGAGCATTGCAAACGTCTAAGCAAAACGGTATATTTGGGTAATCGA
AAATTCCTCCCTGAAGACTCCGACCTTAGAAAGTCCACATATTTTCCTGA
TGGTAAAGAAGAGCACTCTAAGGCTCCCGAGGCTCTGACAAAAGACGAAC
AAATCGAACTTCGCCGTGAGTACGATGGAAAGCCTAACAAGACCCAaaag
gcaaaatttttaaaggaaaaggGAGTGAAAGGTAAGAATCTCAAAGTAAA
GGTAATCTTATCATACTTAGAGATTAGtatgttaaaagtttttaaattta
cTATAAAGAATATAAATACAGCTAAACTAGAAATCGATTAGgcgaaagaa
attaaatttgttgCTCTAAGGGCCCAAGCGATCCTGTTTTTACtagaatc
aaaaaaataatgatatagAATTTCCAGTGCTGTTACATGGTTTTAGAAAC
AGGAAAGAGTTCTTTAAAATATAATCCAGATCCAAGTACTTTTGAGTATA
CTTTGAGCATCATTAAATGGAATGAAAAAGATTAAATTTAAAtccattta
aaattgaaaacattatttttatgtTCTTTGCTGAccctaaattttgaaaa
atctttcccCTTACATTTACAGGTGTTCAGGAAATCAAAGTTTTGTGCTC
AaacgaaattgaaaataaaatgttacatTCTATCATGTAGGCGAATATCC
ATTCATGGAGTTACCCTAtcataacctgataacagctgttcataattctc
ttacgtgcacggtaaacctctgaaggcacttgaaaattatacatctgagg

Coding sequence (CDS) from alignment at scaffold_431:73294..74143+

>TCONS_00065128 ID=TCONS_00065128|Name=TCONS_00065128|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_431:73294..74143+ (Clytia hemisphaerica)
ttttttatttgggtAGGTGGTTTGAGGGCATGTCCCTGGTGCATAAGCGT
TGGTGAGCATTGCAAACGTCTAAGCAAAACGGTATATTTGGGTAATCGAA
AATTCCTCCCTGAAGACTCCGACCTTAGAAAGTCCACATATTTTCCTGAT
GGTAAAGAAGAGCACTCTAAGGCTCCCGAGGCTCTGACAAAAGACGAACA
AATCGAACTTCGCCGTGAGTACGATGGAAAGCCTAACAAGACCCAaaagg
caaaatttttaaaggaaaaggGAGTGAAAGGCGAATATCCATTCATGGAG
TTACCCTAtcataacctgataacagctgttcataattctcttacgtgcac
ggtaaacctctgattttttatttgggtAGGTGGTTTGAGGGCATGTCCCT
GGTGCATAAGCGTTGGTGAGCATTGCAAACGTCTAAGCAAAACGGTATAT
TTGGGTAATCGAAAATTCCTCCCTGAAGACTCCGACCTTAGAAAGTCCAC
ATATTTTCCTGATGGTAAAGAAGAGCACTCTAAGGCTCCCGAGGCTCTGA
CAAAAGACGAACAAATCGAACTTCGCCGTGAGTACGATGGAAAGCCTAAC
AAGACCCAaaaggcaaaatttttaaaggaaaaggGAGTGAAAGGCGAATA
TCCATTCATGGAGTTACCCTAtcataacctgataacagctgttcataatt
ctcttacgtgcacggtaaacctctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040834XLOC_040834Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065128-proteinTCONS_00065128-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065128-exon-scaffold_431-1491911889:73294..73574TCONS_00065128-exon-scaffold_431-1491911889:73294..73574Clytia hemisphaericaexon
TCONS_00065128-exon-scaffold_431-1510915933:73294..73574TCONS_00065128-exon-scaffold_431-1510915933:73294..73574Clytia hemisphaericaexon
TCONS_00065128-exon-scaffold_431-1575043694:73294..73574TCONS_00065128-exon-scaffold_431-1575043694:73294..73574Clytia hemisphaericaexon
TCONS_00065128-exon-scaffold_431-1491911889:74034..74143TCONS_00065128-exon-scaffold_431-1491911889:74034..74143Clytia hemisphaericaexon
TCONS_00065128-exon-scaffold_431-1510915933:74034..74143TCONS_00065128-exon-scaffold_431-1510915933:74034..74143Clytia hemisphaericaexon
TCONS_00065128-exon-scaffold_431-1575043694:74034..74143TCONS_00065128-exon-scaffold_431-1575043694:74034..74143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:73294..74143 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194933	0.587463	0.719339	0.245037	0	0	0	0.471233	0.492798	0.40694	0.794941	0.40645	1.69249	1.90365	1.84012	3.48191	3.91463	3.69779	1.46214	5.13325	4.4534	3.94175	1.12421	3.96157	0	0	3.09151	3.80754	3.28548	4.72173
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004242Transposase_21
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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