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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065092 ID=TCONS_00065092|Name=TCONS_00065092|organism=Clytia hemisphaerica|type=transcript|length=3005bp
aatgtccacgatttttcaatgaaactgatattggtacaggaacttttaaa
aatcgtcagaacagccgagaatcgccggatttcttgaatttctcaagttg
ttcttgtattattctgcattttcatacttttgtcgtcatttttcaattgt
ctcaTTACATCAAacaacaggtaggtccattcagcatgtagcttgtttct
CCTTTTTTGAGGTGGTCCGCTAGCAacctttttcatcaaaataaaactTT
GGTGTTATCAGATTTCAAATGTATCTAGtcgatgaaaaatgtttcaagtg
tTCCGAGACCTTTAAAAATTTCCTCTGTAATCTACACGTACGAaagttat
ttttattcttttaaaggAATGTTGCTGAATAAAATGGCCTTTTCTGACCA
GTATCATTTTTTTAACAGAATTGAGCAACAAAGTTGACCAGCTATCAATG
GAATCAAAATCTGTAAAGGTTACAACAAAGACACATTGGAATTTGCCAGA
GCCTGTTTCCATCTTCTTTGGACGAGAAAGTTTGATTGAATCCATTcatt
tgaaacttcaaaaaaatcaagcaATTGCTTTGAGTGAAATGGGAGGTGTG
GGGAAAACACAAACTGCTGCAAAGTTTCTTCAAATGCACAAAGATGAATA
TCAGAAGATATTTTGGATTTCTGCTGTCATCCTCAAGAGATCTTTGAACG
AGATTTTGTGTGCATTTGGTTGTAAACAACTAATACCTGATGAACCTTCG
ATGGAAACTCTGACTTTCATTTTCCTCTCTAAGTTTTGTGAAGGCTCCAA
AGGATCGCTGGTTGTTTTGGATGACGTCACTGAGGTCACAAAAGACGTCA
CTTCATTGATTCGaaatgtgaaagaaaaaatcagcTTATTGTTGACATCT
CAATTGAGGGATTGGGAAGATTATGGTTTGATTCAAATTGCTGTTCCATG
TTTCCAAGATCAAGAATCCATTGGTTTCTTACAGAATGAACTTACTACAG
CCAACCATCAAGAAATCTCCATTTTAGCGAATCGTTTACAATCATTACCT
TTAGCCCTTCAGCAAGCCATTTGTTACATCAAAAAACACAAAGTTCCTCT
ACACAAATACATCGAACAATTTGAAGCAtgcagaaaaagtgttttgggAA
TGAAAATCAATTCCTTTACTGAATATGACAAAACATTGTTGACAGTTTGG
GATATGGCTTTTGCGAAGATTCGGGTCGAATCAAATAATGCTCTTTTGAT
CTTGGGAATGATGGCTTTAATTGACaatcgaaaaatcaataaaaagacTT
TCAGTTATTTTGATAAAGTTGACGAGTTTGAATTAAATGAAATCATCAAT
CTGCTTTGTCAATATTCATTGGTCAACGAGCGAAACGAATGTTTAGAAAT
TCACAGTCTTGTGCAAAAAGTTATCCGATATCGTATCGAACAAAAACAAT
ATGTTGAGGATGAATGTCCGTTGACACTGCTTGAAGATGTTCTTTTGAAA
ATCGAGGTTTCTATTAAAGATTTGTTTGCAAATGATGACTATGAGGATTT
ATGGTACATTCATGTTTTTCGTTTGATCATGAGTGGTGGATTCAAAACTA
TCAACTTTAATGTTTCCCGGGTGTTAACTATCGCCGCAGGCAGAATGGAG
ATGGAAAACTTATACCGAATTTCTGAACTATTTTTAAAAGTTGTTTTAAA
ACAATATAGGTTATGTCAAGATGTGAAAACTTTTGATATGCTGTTGGTTG
TTCATCGTCGTTTCATATACGCGTCAAGTCAATTAGGTTTACTTAATTTG
AATGagatttttgcttttgaagAAGAGTTTTCCTCAGAGCTTGAAGAACA
TTCTGTATTCGTTTACCGTTGGAAGCTAGAGCAAGCTGAGGCATATAATA
TACATGGAAGAGTGTCGTTAGGCGAAGATATagttcaaaatttatttaat
gAACTAGTCAAGAAGAAAGGATTTGATGATGTTAAATTAAGATTGGCGAG
TTTTCTCACCGTAAGGGATGTTGAAGTTTTGTTGAATTCAGTTGACACAA
ATAATCTCAGTGACGTTAACTTTCTGATGTATTATTATGCAAAATGTTCT
TTATACATCGAGAACGGTTGCTTTCATTTGGCTGAACAAACCATGAAGAA
TTGGAAAGAACATTTACACAGAAAACAATTTTCTCGATCGTCTCAGTTTA
ACTTCACAAAAAAGAATTGCTTTTTACTTTACAAGAAAGGAAATTACAAC
GAAGCATTACTTGTATGCGATGAACTTAAACGAGACATTGTCTTTACTAA
TGCAGATGTTTACATTTCGGAAGCCttgattttgatcaaattaGGAAAGT
TCAACGACGCAGAAGTGTTACTTGATAACCTTAATAAACGCAATAATAAT
GGATCCATCATTAGAATCAGTTCATACCTGAAATTTCGAAAGCACGACTT
TGAGGCAGTAGAAAATCTCCTCACTATTGTGGAAGATGAGGatttgttaa
atattttgtttttggtaAAGGAATATGCGAAACTGCATCGACAACTCGAA
AATAATAAATCGAGAGAAATGGTTGAACGATGtttgcaaatgaaaaaaat
tgtaaatgaaTTATTTCAAGTACAATTGGATATGATTTATCTTTGAAATC
TTATTATATGGAATTATGATTAGAATTGCATCTTTGGGTATTACTCCAAC
TTTTGGCTAAACTGATTAGTTTTTCAAATGCCAGCAATGTAATTGTTGCA
TTGACTAGGCctgtaaaatcaaaatttctttttaattatgaAAATATTCT
AAGGGATGGTTTCAGTGGGGACCTGATTCCACCATTCGGTCAAATTTGtg
tccaatttccgtcaaaccgtcaaGATCAAGACCGAAATTCTGCCActgaa
aatttcctttgaaattNAAGTTTTTTTTATCATGAAAATATTCGAGGGAg
tggtttcagggggtacctgatTCCGCCATTCGGCAAATTTTTGGTTAATT
TCCGC Run BLAST on NCBI transcript from alignment at scaffold_43:48649..51929- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065092 ID=TCONS_00065092|Name=TCONS_00065092|organism=Clytia hemisphaerica|type=transcript|length=3281bp|location=Sequence derived from alignment at scaffold_43:48649..51929- (Clytia hemisphaerica)
AATGTCCACGATTTTTCAATGAAACTGATATTGGTACAGGAACTTTTAAA
AATCGTCAGAACAGCCGAGAATCGCCGGATTTCTTGAATTTCTCAAGTTG
TTCTTGTATTATTCTGCATTTTCATACTTTTGTCGTCATTTTTCAATTGT
CTCATTACATCAAACAACAGGTAGGTCCATTCAGCATGTAGCTTGTTTCT
CCTTTTTTGAGGTGGTCCGCTAGCAACCTTTTTCATCAAAATAAAACTTT
GGTGTTATCAGATTTCAAATGTATCTAGTCGATGAAAAATGTTTCAAGTG
TTCCGAGACCTTTAAAAATTTCCTCTGTAATCTACACGTACGAAAGTTAT
TTTTATTCTTTTAAAGGAATGTTGCTGAATAAAATGGCCTTTTCTGACCA
GTATCATTTTTTTAACAGAATTGAGCAACAAAGTTGACCAGCTATCAATG
GAATCAAAATCTGTAAAGGGTAAAGCTTTAGCTATGATTTTTATTTTTTC
TATCCATGCTTTATTATTTTTTTTATTCTTTTAAAGGAATATTGCTGAAT
AAAAAGGCCTTTTTTGACGAGTATCATTTTTTTAAACAGAATTGAGCAAC
AAAGTTGACCAGCTATCAATGGAATCAAAATCCGTAAAGGGTAAAGCTTT
AGCTATGATTTTTATTTTAACTACCCATCTCTGCCTGAATTTATTCAAAG
AAACTTTATCTTTAATTTGTTTACCTTCTTTTGTATTCCTTCTAGTTACA
ACAAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGGACG
AGAAAGTTTGATTGAATCCATTCATTTGAAACTTCAAAAAAATCAAGCAA
TTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAG
TTTCTTCAAATGCACAAAGATGAATATCAGAAGATATTTTGGATTTCTGC
TGTCATCCTCAAGAGATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTA
AACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTC
CTCTCTAAGTTTTGTGAAGGCTCCAAAGGATCGCTGGTTGTTTTGGATGA
CGTCACTGAGGTCACAAAAGACGTCACTTCATTGATTCGAAATGTGAAAG
AAAAAATCAGCTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTAT
GGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGATCAAGAATCCATTGG
TTTCTTACAGAATGAACTTACTACAGCCAACCATCAAGAAATCTCCATTT
TAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCAGCAAGCCATTTGT
TACATCAAAAAACACAAAGTTCCTCTACACAAATACATCGAACAATTTGA
AGCATGCAGAAAAAGTGTTTTGGGAATGAAAATCAATTCCTTTACTGAAT
ATGACAAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGG
GTCGAATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTAATTGA
CAATCGAAAAATCAATAAAAAGACTTTCAGTTATTTTGATAAAGTTGACG
AGTTTGAATTAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTC
AACGAGCGAAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTAT
CCGATATCGTATCGAACAAAAACAATATGTTGAGGATGAATGTCCGTTGA
CACTGCTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTTG
TTTGCAAATGATGACTATGAGGATTTATGGTACATTCATGTTTTTCGTTT
GATCATGAGTGGTGGATTCAAAACTATCAACTTTAATGTTTCCCGGGTGT
TAACTATCGCCGCAGGCAGAATGGAGATGGAAAACTTATACCGAATTTCT
GAACTATTTTTAAAAGTTGTTTTAAAACAATATAGGTTATGTCAAGATGT
GAAAACTTTTGATATGCTGTTGGTTGTTCATCGTCGTTTCATATACGCGT
CAAGTCAATTAGGTTTACTTAATTTGAATGAGATTTTTGCTTTTGAAGAA
GAGTTTTCCTCAGAGCTTGAAGAACATTCTGTATTCGTTTACCGTTGGAA
GCTAGAGCAAGCTGAGGCATATAATATACATGGAAGAGTGTCGTTAGGCG
AAGATATAGTTCAAAATTTATTTAATGAACTAGTCAAGAAGAAAGGATTT
GATGATGTTAAATTAAGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGA
AGTTTTGTTGAATTCAGTTGACACAAATAATCTCAGTGACGTTAACTTTC
TGATGTATTATTATGCAAAATGTTCTTTATACATCGAGAACGGTTGCTTT
CATTTGGCTGAACAAACCATGAAGAATTGGAAAGAACATTTACACAGAAA
ACAATTTTCTCGATCGTCTCAGTTTAACTTCACAAAAAAGAATTGCTTTT
TACTTTACAAGAAAGGAAATTACAACGAAGCATTACTTGTATGCGATGAA
CTTAAACGAGACATTGTCTTTACTAATGCAGATGTTTACATTTCGGAAGC
CTTGATTTTGATCAAATTAGGAAAGTTCAACGACGCAGAAGTGTTACTTG
ATAACCTTAATAAACGCAATAATAATGGATCCATCATTAGAATCAGTTCA
TACCTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCAC
TATTGTGGAAGATGAGGATTTGTTAAATATTTTGTTTTTGGTAAAGGAAT
ATGCGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATGGTT
GAACGATGTTTGCAAATGAAAAAAATTGTAAATGAATTATTTCAAGTACA
ATTGGATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGA
ATTGCATCTTTGGGTATTACTCCAACTTTTGGCTAAACTGATTAGTTTTT
CAAATGCCAGCAATGTAATTGTTGCATTGACTAGGCCTGTAAAATCAAAA
TTTCTTTTTAATTATGAAAATATTCTAAGGGATGGTTTCAGTGGGGACCT
GATTCCACCATTCGGTCAAATTTGTGTCCAATTTCCGTCAAACCGTCAAG
ATCAAGACCGAAATTCTGCCACTGAAAATTTCCTTTGAAATTNAAGTTTT
TTTTATCATGAAAATATTCGAGGGAGTGGTTTCAGGGGGTACCTGATTCC
GCCATTCGGCAAATTTTTGGTTAATTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065092-exon-scaffold_43-1575043694:51461..51929 | TCONS_00065092-exon-scaffold_43-1575043694:51461..51929 | Clytia hemisphaerica | exon |
| TCONS_00065092-exon-scaffold_43-1575043694:48649..51184 | TCONS_00065092-exon-scaffold_43-1575043694:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065092-exon-scaffold_43-1510915933:51461..51929 | TCONS_00065092-exon-scaffold_43-1510915933:51461..51929 | Clytia hemisphaerica | exon |
| TCONS_00065092-exon-scaffold_43-1510915933:48649..51184 | TCONS_00065092-exon-scaffold_43-1510915933:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065092-exon-scaffold_43-1491911889:51461..51929 | TCONS_00065092-exon-scaffold_43-1491911889:51461..51929 | Clytia hemisphaerica | exon |
| TCONS_00065092-exon-scaffold_43-1491911889:48649..51184 | TCONS_00065092-exon-scaffold_43-1491911889:48649..51184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_43 | supercontig | scaffold_43:48649..51929 - |
Blast
The following BLAST results are available for this feature:
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