TCONS_00065069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065069
Unique NameTCONS_00065069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065069 ID=TCONS_00065069|Name=TCONS_00065069|organism=Clytia hemisphaerica|type=transcript|length=833bp
tgctgTTTTTCGTTGAAATTAGAACACATATTGTAAAACAAATCACGTGG
TATAGCAGGATTTTGATTTGTCACAGTAAAAGGTATCAAGGGGTTCTCAT
TCGATTCGTTATTAGATTCATTGTCTTGATCAAAGTCTATTAAATCTGGA
TGAAATACACCATAATCGTTGCCTTGTTCATCTTCACTGCTACTTTCTGA
GTCAGAGTTATCATAAACGGGTATTTCGTCCAGGTCTATTTCATTTGGTT
GGTTAAAATTAGAATCATGTTTTAAAATGTTTGGCATAATCACCTCTTCA
ACttcaaagaatttttcttcaaatgttGCACAATCTCCTTTAATGGTATC
TTCATTTTCCCAAGGCATGTATAATTGGAGAAGCACACGGTAGTAATTAT
TTCTATCTTGAAGTTTACTAACTTTATGATATCGGATTACACACGCGCGG
cttctttttctcattttcccCATGCCATTTTTCAATGTAATTGTTTTGGA
TAATTCAGCATTAATCTCGATAGTTTCTGTTTCATTGTCAGATTCATTta
cttcatcttcttcttcattttcgtttttctttggATAAGTATACGTGGAA
GCAAAGTCAGCATAGCACATGTCTCTTAAGTTATTGGGACGATTAGCATA
CTTGTCaattaaattctttttgtaaacatttttgaaTTCTGGATCGAGTT
TAGCTAGCTCGGATGGGTTTTTTAACATCCTTAATCGCTTTTCTTTTGGT
CCTGATGGAATATATTCAACATCAATATTCGAGGTTCGCATCTTTAAAGA
CAGAGTCCTTTTTATCGCTTCATGAGTCGATAC
Run BLAST on NCBI

protein sequence of TCONS_00065069-protein

>TCONS_00065069-protein ID=TCONS_00065069-protein|Name=TCONS_00065069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
VSTHEAIKRTLSLKMRTSNIDVEYIPSGPKEKRLRMLKNPSELAKLDPEF
KNVYKKNLIDKYANRPNNLRDMCYADFASTYTYPKKNENEEEDEVNESDN
ETETIEINAELSKTITLKNGMGKMRKRSRACVIRYHKVSKLQDRNNYYRV
LLQLYMPWENEDTIKGDCATFEEKFFEVEEVIMPNILKHDSNFNQPNEID
LDEIPVYDNSDSESSSEDEQGNDYGVFHPDLIDFDQDNESNNESNENPLI
PFTVTNQNPAIPRDLFYNMCSNFNEKQ
Run BLAST on NCBI

transcript from alignment at scaffold_428:408922..409754

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065069 ID=TCONS_00065069|Name=TCONS_00065069|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at scaffold_428:408922..409754 (Clytia hemisphaerica)
GTATCGACTCATGAAGCGATAAAAAGGACTCTGTCTTTAAAGATGCGAAC
CTCGAATATTGATGTTGAATATATTCCATCAGGACCAAAAGAAAAGCGAT
TAAGGATGTTAAAAAACCCATCCGAGCTAGCTAAACTCGATCCAGAAttc
aaaaatgtttacaaaaagaatttaattGACAAGTATGCTAATCGTCCCAA
TAACTTAAGAGACATGTGCTATGCTGACTTTGCTTCCACGTATACTTATc
caaagaaaaacgaaaatgaagaagaagatgaagtaAATGAATCTGACAAT
GAAACAGAAACTATCGAGATTAATGCTGAATTATCCAAAACAATTACATT
GAAAAATGGCATGgggaaaatgagaaaaagaagCCGCGCGTGTGTAATCC
GATATCATAAAGTTAGTAAACTTCAAGATAGAAATAATTACTACCGTGTG
CTTCTCCAATTATACATGCCTTGGGAAAATGAAGATACCATTAAAGGAGA
TTGTGCaacatttgaagaaaaattctttgaaGTTGAAGAGGTGATTATGC
CAAACATTTTAAAACATGATTCTAATTTTAACCAACCAAATGAAATAGAC
CTGGACGAAATACCCGTTTATGATAACTCTGACTCAGAAAGTAGCAGTGA
AGATGAACAAGGCAACGATTATGGTGTATTTCATCCAGATTTAATAGACT
TTGATCAAGACAATGAATCTAATAACGAATCGAATGAGAACCCCTTGATA
CCTTTTACTGTGACAAATCAAAATCCTGCTATACCACGTGATTTGTTTTA
CAATATGTGTTCTAATTTCAACGAAAAAcagca

Coding sequence (CDS) from alignment at scaffold_428:408922..409754

>TCONS_00065069 ID=TCONS_00065069|Name=TCONS_00065069|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_428:408922..409754 (Clytia hemisphaerica)
GTATCGACTCATGAAGCGATAAAAAGGACTCTGTCTTTAAAGATGCGAAC
CTCGAATATTGATGTTGAATATATTCCATCAGGACCAAAAGAAAAGCGAT
TAAGGATGTTAAAAAACCCATCCGAGCTAGCTAAACTCGATCCAGAAttc
aaaaatgtttacaaaaagaatttaattGACAAGTATGCTAATCGTCCCAA
TAACTTAAGAGACATGTGCTATGCTGACTTTGCTTCCACGTATACTTATc
caaagaaaaacgaaaatgaagaagaagatgaagtaAATGAATCTGACAAT
GAAACAGAAACTATCGAGATTAATGCTGAATTATCCAAAACAATTACATT
GAAAAATGGCATGgggaaaatgagaaaaagaagCCGCGCGTGTGTAATCC
GATATCATAAAGTTAGTAAACTTCAAGATAGAAATAATTACTACCGTGTG
CTTCTCCAATTATACATGCCTTGGGAAAATGAAGATACCATTAAAGGAGA
TTGTGCaacatttgaagaaaaattctttgaaGTTGAAGAGGTGATTATGC
CAAACATTTTAAAACATGATTCTAATTTTAACCAACCAAATGAAATAGAC
CTGGACGAAATACCCGTTTATGATAACTCTGACTCAGAAAGTAGCAGTGA
AGATGAACAAGGCAACGATTATGGTGTATTTCATCCAGATTTAATAGACT
TTGATCAAGACAATGAATCTAATAACGAATCGAATGAGAACCCCTTGATA
CCTTTTACTGTGACAAATCAAAATCCTGCTATACCACGTGATTTGTTTTA
CAATATGTGTTCTAATTTCAACGAAAAAcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040798XLOC_040798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065069-exon-scaffold_428-1491911889:408922..409754TCONS_00065069-exon-scaffold_428-1491911889:408922..409754Clytia hemisphaericaexon
TCONS_00065069-exon-scaffold_428-1510915933:408922..409754TCONS_00065069-exon-scaffold_428-1510915933:408922..409754Clytia hemisphaericaexon
TCONS_00065069-exon-scaffold_428-1575043694:408922..409754TCONS_00065069-exon-scaffold_428-1575043694:408922..409754Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065069-proteinTCONS_00065069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:408922..409754 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.542164	1.29245	0.815039	0.617383	0.956464	0.850094	2.40222	3.3073	1.35795	2.17529	3.8892	2.86853	2.78327	2.0332	2.61363	2.28147	2.68258	5.02572	2.2777	2.23173	8.08478	7.85468	1.6127	2.58349	4.64702	6.1536	3.29348	1.76584	0.930902	0.661348
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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