TCONS_00065065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065065
Unique NameTCONS_00065065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065065 ID=TCONS_00065065|Name=TCONS_00065065|organism=Clytia hemisphaerica|type=transcript|length=301bp
TTCATGTGTCCAGAAATAGTTAAGGGGTAGTTGTATGATTTAGCGGAcat
agaatctgaagttgatcaaattgccgcgcgggcacgCGTCTAAatagtgg
ttcttcggtttaaAATGTATTAAGGGAGCGATGACTAAGTGGTCAAAAGC
GTCAACGTTACTAACTCAGGATTCGCATTCTGTTTTCCCGCTCCTTCCAA
AGTTCTGTTCAGTTGATAAAATAACCGGGTCGGCTGGCCCGTGGACCCCG
TGAGAACAATCGAAATACTACCGagaagtcctagattactggatAATCCG
C
Run BLAST on NCBI

transcript from alignment at scaffold_428:162104..162404

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065065 ID=TCONS_00065065|Name=TCONS_00065065|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_428:162104..162404 (Clytia hemisphaerica)
GCGGATTatccagtaatctaggacttctCGGTAGTATTTCGATTGTTCTC
ACGGGGTCCACGGGCCAGCCGACCCGGTTATTTTATCAACTGAACAGAAC
TTTGGAAGGAGCGGGAAAACAGAATGCGAATCCTGAGTTAGTAACGTTGA
CGCTTTTGACCACTTAGTCATCGCTCCCTTAATACATTttaaaccgaaga
accactatTTAGACGcgtgcccgcgcggcaatttgatcaacttcagattc
tatgTCCGCTAAATCATACAACTACCCCTTAACTATTTCTGGACACATGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040794XLOC_040794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065065-exon-scaffold_428-1491911889:162104..162404TCONS_00065065-exon-scaffold_428-1491911889:162104..162404Clytia hemisphaericaexon
TCONS_00065065-exon-scaffold_428-1510915933:162104..162404TCONS_00065065-exon-scaffold_428-1510915933:162104..162404Clytia hemisphaericaexon
TCONS_00065065-exon-scaffold_428-1575043694:162104..162404TCONS_00065065-exon-scaffold_428-1575043694:162104..162404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:162104..162404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74222	0.166746	1.13694	0.721838	3.47816	2.44628	5.63735	0.834438	1.4296	1.11326	1.60169	1.86781	0	0	1.0323	3.10313	0.760069	1.25723	0.888534	0.335436	0.408173	0.158217	0	0	3.94792	3.90018	1.37565	1.98246	0.0935864	1.74604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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