|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065051 ID=TCONS_00065051|Name=TCONS_00065051|organism=Clytia hemisphaerica|type=transcript|length=1653bp
ATAAATCTTCAGCAACGCGCAGGTGTTGTGGTTCCGAGAAACGTACTGGT
AGAGTCTTCGAAGAGTCTTGGAGGTGGTATCTTTTTGTCTGGCGATGTTC
ATTCTTGAGTAGTTCGCACTCTCAGAGCTATCAGCTGTGaaaGAACAATA
ACAATGGAGATACCTTGTATGCTTCTCGTAATATTGAGGTGTACTTTTGA
AGTTTGTTCTTTATCCATCCCTTCACCACCACTGGCATATGTAGACAAAG
AAATGGAACAGAAGATTAAGTTTCATAAAACACAAGattgGATAGAATGG
ACTGCTTGGTCTCGTTGCACAGCCACACGCAACGAATGTCACAGCGGAAG
TCAGTCCAGACAGCGGAAATGTATCTCTCCATCCGGCTGTTCCGGTATTT
TCGAAGAAAGCCGGGATTGCCCTCAATCTGGTTGTCAAGattacTTGCAT
CCGATGGCAACACAAGAAGTAATGCCAGCTTCCTACAGCTCCTTCATATC
TCAAGAATGTGACACAGACATCAAATTCTCACTCAAAAGTCACCGAGCAA
AAGCCATTCCACCCATGATCCAAGAACGgtttatcgggaaatcggaacAC
ATCCAAAACGGATATTTCAATAGTAAATATTTACCAGGTGATCCCGATAA
AAAACTTCGGAATATGGTTAAATATTGTTTTGAACCACACAGACTTACAG
CTGGCGAGGCTAGCCAATTATCTTATTTTAATCGGACTTCAAGGTCGTCA
TTATATCCGGAACAAAAATCGGATTATCCGGGGTCGAAACATGTTTCTGG
GTTAAGTATTGTAGTGGACAACCATCAGAATCTAGTGGTAGCATATTTTG
CTTTACCATCATCAACGTTGGGTTATCGGAAGATTTATTATAGACGTTGG
AAAGGAATGGGCTTTGAGGAAGCAGTTTAACAATTACTCAATAGAATAAA
GAAGTCTGATTTTGAATTTCGAGGTTAATGTTACCATGATTATTATTATA
TTGCTaaacaccttttcgaccgtagtcgcatGGTCAAGCGCGTGTCACTT
TATTATTTagtttaccaccctaaactcgatccaatcttaTTTTTACACTT
tgtctattgtctttaggtgcgaaaaaacggttttagggtggtaaaacgga
cgaAAAAGTGTCCATGCGGTAATTGGCGGTATTATATTATTATTGAAACG
CATTCATGACCAGGTAGATATTCAATTGATATTATCGTTTCGGTAAAAAT
ACTCTTGACACTTGAAAactgaattgaattgaattgaagaTTATTGTAAG
GTGTGCTAAGTGTGAAGAGGAGACGGAGAAGAAATTTAATTTACCATTCA
TGAATGGTCTGGAATCATAGTATACGATTGGAATTGTTCACTTTCTTTGC
AACGGTATCGTTCTTTATGCGAAATTATATGACTTCAGTTTAATCATCGT
TACTCAATAGCAAATTGAACCTTCAGCACGTCGGTATTTTCACAACATTT
TCCACATATCAAGACAGTAATGAGTATTGCATAAGGGTGAAAATATATTA
TCATGGAACAGTCGATTTTCCAATCCCGCAATATTCTTCTTGAGCAGAAT
TAAGTTCTGATAGCTCTGCTCGATGccgtaattttattttttttgtatat
aaa Run BLAST on NCBI protein sequence of TCONS_00065051-protein >TCONS_00065051-protein ID=TCONS_00065051-protein|Name=TCONS_00065051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MEIPCMLLVILRCTFEVCSLSIPSPPLAYVDKEMEQKIKFHKTQDWIEWT
AWSRCTATRNECHSGSQSRQRKCISPSGCSGIFEESRDCPQSGCQDYLHP
MATQEVMPASYSSFISQECDTDIKFSLKSHRAKAIPPMIQERFIGKSEHI
QNGYFNSKYLPGDPDKKLRNMVKYCFEPHRLTAGEASQLSYFNRTSRSSL
YPEQKSDYPGSKHVSGLSIVVDNHQNLVVAYFALPSSTLGYRKIYYRRWK
GMGFEEAV Run BLAST on NCBI transcript from alignment at scaffold_428:396510..399773- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065051 ID=TCONS_00065051|Name=TCONS_00065051|organism=Clytia hemisphaerica|type=transcript|length=3264bp|location=Sequence derived from alignment at scaffold_428:396510..399773- (Clytia hemisphaerica)
ATAAATCTTCAGCAACGCGCAGGTGTTGTGGTTCCGAGAAACGTACTGGT
AGAGTCTTCGAAGAGTCTTGGAGGTGGTATCTTTTTGTCTGGCGATGTTC
ATTCTTGAGTAGTTCGCACTCTCAGAGCTATCAGCTGTGGTATTTCATTT
TGCATTTTTTGTATTACAGTATATACTAGGGGAGGAATAGAAATTCACTC
TCAAGCTAATTTATGTTCGAGCAAATTTTTAAATTTCGATCGTCTAAACA
TATCTATGAGCCCCTCCCCCCCGCAATGACACATCTATGAAACTAAATTG
ATTACTTACCTCTTGCTAAGACAACAAATATCATGGTAAATTTGATTTAT
AGTGACTTTCAAATGTTTCAAATAATTGAATTTGATTTATAGTGGCTTTC
AAATGTTTCAAATAACTAAATCTAAATTTTGTATTTCGTAATTCCAACTA
TCATAATCAAAAAGTTAAATTACCCTTTTAAATCTGTATCCCTTTTAAAA
TTCAACAGTGCTCTAAATACATATATGCAGAATTATTTTCCTAAAATCTA
AACCAAACAACCTTCTAGGTAATATTTTTACAGTGTTGCTACTAACTATG
AGTGAATTTTGGCTGAAATTATATCTTATTATTATCTTAATTATTATCTG
AAATTTTACGTATTTTCTTGCAGAAATTTTTGGCAGATACACGCTTACAG
TCAGTTACAGCATCTAGTCAAATTACAATAAATATTATTTTTTCAGAAAG
AACAATAACAATGGAGATACCTTGTATGCTTCTCGTAATATTGAGGTGTA
CTTTTGAAGTTTGTTCTTTATCCATCCCTTCACCACCACTGGCATATGTA
GACAAAGAAATGGAACAGAAGATTAAGTTTCATAAAACACAAGGTATGTT
GACTGAACTGGTTTAGACACTTATGTCTACCCTTGACTTATCGACCCTTT
TAACACCGGCCCTAATTTAGCGTCGGCCCTTTCATGCCTGTCCTTGTTAC
GCTAAGGCTCTATTTTTTCCATTTTCAGCCCGACCCTAATTCAATTCCAG
TCCCTCAGGCAGGAATTAAATTGAGGTCGTACTAAGGACCAAGGACCGCG
TGAAAGGGACCGACACCAGCGACAAAAAGCAACGCCAATAAGGACCGGCG
TAAAAGGGCCGATANGCGTGAAAGGGACCAACGCCAGCGACAAAAAGCAA
CGCTAATAAATAAGGACCGGCGTATAAGGGCCGATATGGTAGTTTTCTTA
ACCTTAAAATTGATGAAAAATGTACTTAGCTCGAGGCTAATCAAAATCAA
CTATTAATTACAATTCTATCTATTAAGTTGATAAAAGATCAAATGGAATC
ACAAATTGGCAAATAATATTTGTGTGCCATTACTGTGCCGTTGCTCCGAA
ATGTTGTTTAAAAGTTCACACAATCAAGACTTCTTACTTATCAGCTCTTA
GGAAGATCGACGAAAGGTCTTAAAATTCGCTTTATAGTTTTAAAAACGTT
TAAAATCTTTAGATTGGATAGAATGGACTGCTTGGTCTCGTTGCACAGCC
ACACGCAACGAATGTCACAGCGGAAGTCAGTCCAGACAGCGGAAATGTAT
CTCTCCATCCGGCTGTTCCGGTATTTTCGAAGAAAGCCGGGATTGCCCTC
AATCTGGTTGTCAAGGTCAGTAAAATAACGATTCACTTTCTTATTCTTTC
TTAATCTTTCTTAATCTCACTGGCTAAAGGGAAGTATTCCATTTCTCATC
CCCTCGCACAATTTCAATGGAATCTCGACAAAGAATTGTCTTTTGATGTC
TGATTTTGAAAGACTTGACTAAAAGAGGTTTTTCAAGTTTGGTAAAGTTA
AGTATCGAGCAACGTCTGCCATTATGGAAGCAAAAGTTTGATTTTTGCGA
AGACTACAGATTCGAACGTTGGTGAAAATTACGTAACTTTGCAAAACATA
AAAAGCATCTAAAGTATGAATGAGGCCTGTGCAAACAGCTACAAAGTCTA
GGCTCCATTTGACTCTTATCAAACCCTTATCAATGATTTTTCTTTTTTAG
ATTACTTGCATCCGATGGCAACACAAGAAGTAATGCCAGCTTCCTACAGC
TCCTTCATATCTCAAGAATGTGACACAGACATCAAATTCTCACTCAAAAG
TCACCGAGCAAAAGCCATTCCACCCATGATCCAAGAACGGTTTATCGGGA
AATCGGAACACATCCAAAACGGATATTTCAATAGTAAATATTTACCAGGT
GATCCCGATAAAAAACTTCGGAATATGGTTAAATATTGTTTTGAACCACA
CAGACTTACAGCTGGCGAGGCTAGCCAATTATCTTATTTTAATCGGACTT
CAAGGTCGTCATTATATCCGGAACAAAAATCGGATTATCCGGGGTCGAAA
CATGTTTCTGGGTTAAGTATTGTAGTGGACAACCATCAGAATCTAGTGGT
AGCATATTTTGCTTTACCATCATCAACGTTGGGTTATCGGAAGATTTATT
ATAGACGTTGGAAAGGAATGGGCTTTGAGGAAGCAGTTTAACAATTACTC
AATAGAATAAAGAAGTCTGATTTTGAATTTCGAGGTTAATGTTACCATGA
TTATTATTATATTGCTAAACACCTTTTCGACCGTAGTCGCATGGTCAAGC
GCGTGTCACTTTATTATTTAGTTTACCACCCTAAACTCGATCCAATCTTA
TTTTTACACTTTGTCTATTGTCTTTAGGTGCGAAAAAACGGTTTTAGGGT
GGTAAAACGGACGAAAAAGTGTCCATGCGGTAATTGGCGGTATTATATTA
TTATTGAAACGCATTCATGACCAGGTAGATATTCAATTGATATTATCGTT
TCGGTAAAAATACTCTTGACACTTGAAAACTGAATTGAATTGAATTGAAG
ATTATTGTAAGGTGTGCTAAGTGTGAAGAGGAGACGGAGAAGAAATTTAA
TTTACCATTCATGAATGGTCTGGAATCATAGTATACGATTGGAATTGTTC
ACTTTCTTTGCAACGGTATCGTTCTTTATGCGAAATTATATGACTTCAGT
TTAATCATCGTTACTCAATAGCAAATTGAACCTTCAGCACGTCGGTATTT
TCACAACATTTTCCACATATCAAGACAGTAATGAGTATTGCATAAGGGTG
AAAATATATTATCATGGAACAGTCGATTTTCCAATCCCGCAATATTCTTC
TTGAGCAGAATTAAGTTCTGATAGCTCTGCTCGATGCCGTAATTTTATTT
TTTTTGTATATAAA Coding sequence (CDS) from alignment at scaffold_428:396510..399773- >TCONS_00065051 ID=TCONS_00065051|Name=TCONS_00065051|organism=Clytia hemisphaerica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_428:396510..399773- (Clytia hemisphaerica)
ATTACTTGCATCCGATGGCAACACAAGAAGTAATGCCAGCTTCCTACAGC
TCCTTCATATCTCAAGAATGTGACACAGACATCAAATTCTCACTCAAAAG
TCACCGAGCAAAAGCCATTCCACCCATGATCCAAGAACGGTTTATCGGGA
AATCGGAACACATCCAAAACGGATATTTCAATAGTAAATATTTACCAGGT
GATCCCGATAAAAAACTTCGGAATATGGTTAAATATTGTTTTGAACCACA
CAGACTTACAGCTGGCGAGGCTAGCCAATTATCTTATTTTAATCGGACTT
CAAGGTCGTCATTATATCCGGAACAAAAATCGGATTATCCGGGGTCGAAA
CATGTTTCTGGGTTAAGTATTGTAGTGGACAACCATCAGAATCTAGTGGT
AGCATATTTTGCTTTACCATCATCAACGTTGGGTTATCGGAAGATTTATT
ATAGACGTTGGAAAGGAATGGGCTTTGAGGAAGCAGTTTAAATTGGATAG
AATGGACTGCTTGGTCTCGTTGCACAGCCACACGCAACGAATGTCACAGC
GGAAGTCAGTCCAGACAGCGGAAATGTATCTCTCCATCCGGCTGTTCCGG
TATTTTCGAAGAAAGCCGGGATTGCCCTCAATCTGGTTGTCAAGATGGAG
ATACCTTGTATGCTTCTCGTAATATTGAGGTGTACTTTTGAAGTTTGTTC
TTTATCCATCCCTTCACCACCACTGGCATATGTAGACAAAGAAATGGAAC
AGAAGATTAAGTTTCATAAAACACAAGATTACTTGCATCCGATGGCAACA
CAAGAAGTAATGCCAGCTTCCTACAGCTCCTTCATATCTCAAGAATGTGA
CACAGACATCAAATTCTCACTCAAAAGTCACCGAGCAAAAGCCATTCCAC
CCATGATCCAAGAACGGTTTATCGGGAAATCGGAACACATCCAAAACGGA
TATTTCAATAGTAAATATTTACCAGGTGATCCCGATAAAAAACTTCGGAA
TATGGTTAAATATTGTTTTGAACCACACAGACTTACAGCTGGCGAGGCTA
GCCAATTATCTTATTTTAATCGGACTTCAAGGTCGTCATTATATCCGGAA
CAAAAATCGGATTATCCGGGGTCGAAACATGTTTCTGGGTTAAGTATTGT
AGTGGACAACCATCAGAATCTAGTGGTAGCATATTTTGCTTTACCATCAT
CAACGTTGGGTTATCGGAAGATTTATTATAGACGTTGGAAAGGAATGGGC
TTTGAGGAAGCAGTTTAAATTGGATAGAATGGACTGCTTGGTCTCGTTGC
ACAGCCACACGCAACGAATGTCACAGCGGAAGTCAGTCCAGACAGCGGAA
ATGTATCTCTCCATCCGGCTGTTCCGGTATTTTCGAAGAAAGCCGGGATT
GCCCTCAATCTGGTTGTCAAGATGGAGATACCTTGTATGCTTCTCGTAAT
ATTGAGGTGTACTTTTGAAGTTTGTTCTTTATCCATCCCTTCACCACCAC
TGGCATATGTAGACAAAGAAATGGAACAGAAGATTAAGTTTCATAAAACA
CAAGATTACTTGCATCCGATGGCAACACAAGAAGTAATGCCAGCTTCCTA
CAGCTCCTTCATATCTCAAGAATGTGACACAGACATCAAATTCTCACTCA
AAAGTCACCGAGCAAAAGCCATTCCACCCATGATCCAAGAACGGTTTATC
GGGAAATCGGAACACATCCAAAACGGATATTTCAATAGTAAATATTTACC
AGGTGATCCCGATAAAAAACTTCGGAATATGGTTAAATATTGTTTTGAAC
CACACAGACTTACAGCTGGCGAGGCTAGCCAATTATCTTATTTTAATCGG
ACTTCAAGGTCGTCATTATATCCGGAACAAAAATCGGATTATCCGGGGTC
GAAACATGTTTCTGGGTTAAGTATTGTAGTGGACAACCATCAGAATCTAG
TGGTAGCATATTTTGCTTTACCATCATCAACGTTGGGTTATCGGAAGATT
TATTATAGACGTTGGAAAGGAATGGGCTTTGAGGAAGCAGTTTAAATTGG
ATAGAATGGACTGCTTGGTCTCGTTGCACAGCCACACGCAACGAATGTCA
CAGCGGAAGTCAGTCCAGACAGCGGAAATGTATCTCTCCATCCGGCTGTT
CCGGTATTTTCGAAGAAAGCCGGGATTGCCCTCAATCTGGTTGTCAAGAT
GGAGATACCTTGTATGCTTCTCGTAATATTGAGGTGTACTTTTGAAGTTT
GTTCTTTATCCATCCCTTCACCACCACTGGCATATGTAGACAAAGAAATG
GAACAGAAGATTAAGTTTCATAAAACACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065051-exon-scaffold_428-1575043694:399635..399773 | TCONS_00065051-exon-scaffold_428-1575043694:399635..399773 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1575043694:398881..399027 | TCONS_00065051-exon-scaffold_428-1575043694:398881..399027 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1575043694:398109..398261 | TCONS_00065051-exon-scaffold_428-1575043694:398109..398261 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1575043694:396510..397723 | TCONS_00065051-exon-scaffold_428-1575043694:396510..397723 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1510915933:399635..399773 | TCONS_00065051-exon-scaffold_428-1510915933:399635..399773 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1510915933:398881..399027 | TCONS_00065051-exon-scaffold_428-1510915933:398881..399027 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1510915933:398109..398261 | TCONS_00065051-exon-scaffold_428-1510915933:398109..398261 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1510915933:396510..397723 | TCONS_00065051-exon-scaffold_428-1510915933:396510..397723 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1491911889:399635..399773 | TCONS_00065051-exon-scaffold_428-1491911889:399635..399773 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1491911889:398881..399027 | TCONS_00065051-exon-scaffold_428-1491911889:398881..399027 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1491911889:398109..398261 | TCONS_00065051-exon-scaffold_428-1491911889:398109..398261 | Clytia hemisphaerica | exon |
| TCONS_00065051-exon-scaffold_428-1491911889:396510..397723 | TCONS_00065051-exon-scaffold_428-1491911889:396510..397723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:396510..399773 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
|
