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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065049 ID=TCONS_00065049|Name=TCONS_00065049|organism=Clytia hemisphaerica|type=transcript|length=930bp
GTTTGGCACGATATATAAGATGGGTAAAGGTAAAGCTAACAGTTCTGCTT
CATCTGAGGATAAAACGAGAGAAGCAAAAAGAAGAGGTTTAAGctcacaa
acaaacaaaacagaaaatatgGCAGAAGCTGAAACAATAAAGACTGCAGT
AGCTTGGTGTTTTGGATACGGCTCACTGGTAGAATCCTACCATAACAAAG
CGAAATATGTTGAAGTGAATATCAATTATCGAAGAGTGTGGAATGCATGG
AATACAAAAGCACGTGCAACTTTCCTTGGTCTTgaaaagacaattgaaaa
aCATGCAGTCAACGGAGTGATATATCCCATATATTcacaaaaagaaattg
aagagcTCGACCTTCGTGAACAAGGTTACTCGCGACTCGCCATCCCTCAC
GAAGACGTCAAAGTTTTGAACGAAGGCTTAAACGAAACCATGctaaacat
gaaattagatgcATCCATGCTTTTGTTCACTTATGTTCCAAACTGTGATG
GAAATGCACCTGAAGCTTGGTTCCCAATTCTACAAAGTTACGTCGATTTA
TGCGCCAATGGATTTTTACGTTTCCGAAAAGACGGGCAACCACGCGATGC
CAGCGACCCTGTTAGACGATTCTTAGACACCACTCATAAATGGTCGAAAT
ACATGTTAAACGATCGTGTTTTAGCACGTCGACCCTGGGTGAGCgagaaa
aatcaatttgtgattgATGATTACTTAGATGATGAGGATGACGTCAACGA
TATCCCGGCCGCTTTGTATCCGACCGATTTTTCTGTCCGCTTCTTTAGAG
AAATTCAAGAAGGACTTATGACGTGTGGTACTGACCGTAAAAGATATGTC
TCCGATAATTCGATTTGTCattaacaaaaaagttaaaactttaACTGAAA
TCATAGGACTTTTTAACTTTAGGGCTTGTT Run BLAST on NCBI transcript from alignment at scaffold_428:374610..382642- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065049 ID=TCONS_00065049|Name=TCONS_00065049|organism=Clytia hemisphaerica|type=transcript|length=8033bp|location=Sequence derived from alignment at scaffold_428:374610..382642- (Clytia hemisphaerica)
GTTTGGCACGATATATAAGATGGGTAAAGGTAAAGCTAACAGTTCTGCTT
CATCTGAGGATAAAACGAGAGAAGCAAAAAGAAGAGGTTTAAGGTCAGTT
GATAAAAGTTGTGTGAAATATCTGTGTGTGCGGGATGTGAGGTAAAGCTT
TGACATAGTCGTGTAGGCTAAAAGGCTAGGTAAAGGGAAATTTAAAATTA
GCTGTATCAGAGCCACAACCCCCACAAGCAGGGCAGATGTTCAACAAAGT
TTATTCACCTTCTCTATCATTATAAGATTTTGCTATTTATTGTAGATGTT
TTTTATTGTACAAATTTTTGAAGCCTTCTGTTATTCTAAGCTTTTTTCAG
ATTTAAGTCGATTATTATCCTTTGTTCTTAATTTTACCCTTTCGTGAGTA
TTTTTGTGTGATTTTTTTTTAAGAAATTGGGTGTTTAGAGCGTATAAAAC
CTTGAAATATTCAACCTGTTCTTAACTTGTTCTTAAGGTGTTTTTAAAGG
TTTTATTTTTACATAAGTATTTACAATCATATCAGATACATATTTCATAT
CAGGACAGTATCTTGCTATTGTTATATTATGCTAATATAAGCAAAAATTG
TTTTTCTTTTCCTCTTTCTGGCCAATCTTGCTCCACATCCGTGTCGACCC
AATGTGAAAAAGCTTGTCAATTAAAATTGATGAGTAAGCAAAAGCTATCA
CTCTATTTAAAAACAAAACCTTTAAGGTCTTGTGTTCTTATTGTTTGTTC
TCATAAAAAACGTGTATAGAAGCAAATACGATATTTTTTGAAAGAAGATT
CACACATATCTTTTCCACACGAGAGCAGTTTTGTGTGTGGTGTGTAATTG
AAATTCATTTCCTGGGAAGAAGTTAGTAGTGAAATACAAGGTCATAAAAG
TGCTTACTTTCCAGCTTTAAGATTAGGAGGGAAGTATTGACAGTAGTCAG
CCGCTCAATGCTATAACAAATTCAAAGTGTCGAAGAGTTTTTGCAGTGTG
TCCAAAAAAATGCGAAACAGAATTCATATTAATGAAAATCCTCGTACATT
AATTTACATGGGCTTTAATTACTTATAAACAAAGAAGTTCCATCTTTTTG
CAGCTAAACTGCAGTGGTCGAAATACACAGGTAATCAACTGAAAACATAT
GAACTACGTGAATGAATTTCCTGCTCAATCTGTTCTAAATATGGAAAATA
CATTAGCGAGCAAAAAAATTCGGCGACATTTAATAGTAATCCAGACTTTT
TTAATTACACTATAAGAGACCCCCCAAAGCGGTTTTCGTGAAGGGCATGA
TTTGAAAATTTTCTTTGTGATTGCGTGATCAAAGGTCAAAACATGATCAT
GATTTGAAATATTTTGGAGCCTTGATGCGTGACTTGGACTTTTTCAAAGG
GATGCTTTATTATCCATTTTTTTGCTATTTTACGTGATCGTGGTTTACGA
CAAAAACTTGCTCGATATCGTGATCAGAGCTACCACTGGGGGAGAAGAAA
GGTAGAAAGCTTTTTTTCTCAGCAATAACCACGATGATTTATCGTGATGT
AACTTGACTCTCTTACACGTTTTGTTTATAAGAACATCTAAACATTTTGA
AGCCTTCGAATGTTCTTCACTTTTTGAGTTTTAAGCCTAGAAAATACACG
TTTTTTATGAGAACAAGTTAAGAACATTTTAAGGCTTTGTGGAGTCAAAA
ACACCATATTTCTTCGGAAAATGGTAAAAAATACACACAAAATGGTCAAA
ATAATGTTCATGTTAAGACCGTTTTTAGGCTGGAAACTGAAAAAGTTAAG
AACATCTGAAGGCTTCAAAAATGTTTGGATGTTCTTATAAAAAACCTGTA
AGAGGGTTAAGTTACATCACGATATAAAAGTATTAATATAGATTAGGCTC
TTGCTCAACGAAAAGATTTCTTATAGGAAGTACTATAATGAGGTTTGCGA
ATCAGACTAAAGAGAGATGAGGGAATAAAAACGTCAACTGAAAGATGGAT
TCAAAGGATTAGCTGCAAAGCGTGTTTTAGCTCGACCGCGTTCTCTTATT
TGAAAGTCAATATAGAAAGAGGACGATTGTATTCTGTAAAAAAGCATGAA
CAGTTATCATGCAAAATTCTTTGGGGATATGGTTGAAGTACTTTGAAGGC
AAATATTCATTTCAAGAGAAAAATTGATTTTACACAACAAATCTGCTCAA
CTTTTTCTAATTACACTGCATTTTGAGCTTGGCTGAGATTTAAATCAGTC
CAGCCATTAACATTGAGCTATGATGATTATGGTAAAGCATGAAATTTGAT
AATGTGATTTTGGTTAGAATTTTTGTTTTGGTTTGAATTTTTGTTTTGGT
TTGAATTTTTGTTTAATTTTGGATTTCTTTCGAATTTTAAAAGATTACTT
TAACTTTTGATTTTTGCTCAATATACACGTTTTTTTATAAGAGCATCCAA
AATTTTTGAAGCCTTCGGATGTTCTTAAGTTTACCATTTTAGGAGTATTT
TTGTGCAATTTCCTAAGAAATTGGGTGTTTTTGAGCCCATGAAGACTTAA
AGGCCTTAAAATGTTCTTAACATTTTGGCCATTAAATCCTTATGTTCTTA
TATAGTTTGCACAAAAAAAAAGAAGCTTTTTACCAATTTATAAAAGTACA
TAGACTTTAGTTCGATAGAAAAATTAGACGCCATTGAAACTTGTCTACTA
CTGAACTATAATAAACTACTGGAACTATTTCAAACGCTTGTCTTCGTGGT
CTTCGTGGTCTGATGGGGGTCTGATTGAGGGAAAAGAATATGCAAAAAAT
AACATGTGAGAGCAAGTGAGAGGGTATATTCTTCCTCTACATTCATATGT
GTAATGTTTGATGTGGCTTAGAAGGATGGTAAATTTAATATTTTGTATTA
GATTACATAATGTCTAGACTAGTGAAAGTGTCACGTTTAAAGGTGATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGGTTTTTGTAACTCGGGTTTTTGTAACTCGAGT
TTTTGTAACTCGGGTTTTCCGGGCCTCCTGAAAGATGGATACAAAGGATT
AGCTGCAAAGCGTGTTTTAGCTCGACCGCGTTCTCCTATTTGAGAGTCAA
AATTGAAAGAGGACGATTGTATTCTGTAAAAAAGCATGAACAGTTATCAT
GCAAAATTCTTTGGGGATATGGTTGAAGTACTTTGAAGGCAAATATTCAT
TTCAAGAGAAATATTGATTTTACACAACAAATCTGCTCAACTTTTTCTAA
TTATGCTGCATTTTGAGCTTGGCTGAGATATAAATCAGTACAGCCATTAA
CATTGAGCTCTGATGATTATGGTAAAGCATGAAATTTGATAATGTGATTT
TGGTTAGAATTTTTGTTTAATTTTGGATTTTTGTTTTGGTTTGAATTTTT
GTTTAATTTTGGATTTTTTCGAGTTTTAAAAGATTACTTTACCTTTTGAT
GTTTGCTCACACGTTTTTTTATAAGAACATCCAAAATGTTTGAAGCCTTT
GGATGTTCTTAAGTTTACCATTTTAGGAGTATTTTTGTGCAATTTCCTAA
GAAATTGGGTGTTTTAGAGCCCATGAAGACTTAAAAGCCTTAAAATGTAC
TTAACATTTTGGCCATTAAATCCTTATGTTCTTATATAGTTTGCACTTAT
CAAAAAAAGAAGCTTTTTACCAATTTATAAAAGTACATAGACTTTAGTTC
GATAGAAAAATTAGACGCCATTGAAACTTGTCTACTACCTACTACTAAAC
TATAATAAACTACTGGAACGAAACTGAAACGTTTGTCTTCGTGGTCTGAT
GGGGGTCTGATTGAGGGAAAAGAATATGCGAAAAATAACATGTGAGAGCA
AGTGAGAGGGTATATTCTTCCTCTACATTCATATGTGTAATGTTTGATGT
GGCTTAGATGGTAAATTCAATATTTTGTATTAGATTAATGTCTAGACTAG
TGAAAGTGTCACGTTTAAAGGTGATATCAAATACAGTACACTGGCAGTTG
ATTATTTATGTGACAGACATTGATCTCTATTATATTCTGGAGAAAGTAAT
TTTGTGTTTGCTTTATAGAGTGAATATTTATCTATGACTACATTTGTTTA
ATTTCGCTTCCATTCCGTTCCAGTCTCTCAGTTTATATACTCGTTATATA
CTCGTGTGTTTTAAGTTGTGTACAATACGTCAAGTACTAGACCGGATTGG
TCTCGACAGGATTTCCTAACGGAAATTTTACGCGGTCACCATTTTAGATA
ATTGATACTTGAAATTTCTCTCTGAAGTATTTTCCTTCCTGCCTTTTTAC
TAGTATTCTTCGTAATGGTTTCCGCTGGCAGCTTTGGTTATGTTTAAACT
TAAAAGCTCAGAAATCATCAGTTGTTTCTAGAGACTCAAAATTTCCAACT
CATAACTCACAACTCATGACTCGTGTTCTTCCCAAATTCTTGCTTTTAAC
GAGTTAAACGTGACAGTTACAGTTATTCCCATTATGCCTTTATTTCCTCT
CCTTCTTTCAGCTCACAAACAAACAAAACAGAAAATATGGCAGAAGCTGA
AACAATAAAGACTGCAGTAGCTTGGTGTTTTGGATACGGCTCACTGGTAG
AATCCTACCATAACAAAGCGAAATATGTTGAAGTGAATATCAATTATCGA
AGAGTGTGGAATGCATGGAATACAAAAGCACGTGCAACTTTCCTTGGTCT
TGAAAAGACAATTGAAAAACATGCAGTCAACGGAGTGATATATCCCATAT
ATTCACAAAAAGAAATTGAAGAGCTCGACCTTCGTGAACAAGGTACACAT
TGCTTTTTATAAGCAACCAGGTTGCTATCGAGCTCTGAGATTAGCCTAAA
CTTTTTTACTATCTCGTAAAGTAGAAGCTGATTAGATAATCTAACCATGG
CAAATGATAGCCCTTGACCTAATAAGCATAAATATGGCATAATATCAGGG
TTGGTCAAATAAAATTTCCTGACCCGAAAATTGAGATGCTTATTAGAAAA
ATGTGAATTCAATTCATAAAATGCCAGAAAACGGGAGGGGCACAGCTGGA
GAGTGCTTCCCATTCTATTTGAGAAGATTTTATGGTTAAGACGTTTTTAC
GTAAAGATTGTCTTGCGAAAAAACCTTTATCAAACAAAACTTTCTGAAAT
ACACCAGAGACACGCCATCAAAGGTTCGCGAGACTTTGCTCTAAAAATAA
AAATAAAAACTGGCATTAAAGGTTCTAATTATTTCAAAATCAACTCCTTA
AGGGGGTAGTCATATGAGAAATTTGAAATGTCATTTTTTAAACTTTTTGT
TATATCTTCTGAAGTAGTAAATATTTTTCAATAAAACTTTCCACAATTGT
AGCACAACTATAAAGGATTTGAAAAATTAAAAAAAAATTCTAAAAATAGT
AAAGACGGGGGTAATATCGTCCAGGGGGTAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTGCGTCAACTCTGCGTACGACGCGT
AAACATGGCTTTAAGTCAATAAAAGTGCATTTTCTCATCAAAAAACATAT
TGCCAACAAAATATATCATCCTTGTGGTCTCTCAAATCTGTTTATATCAT
TTACAGGTGAATTTCAGTGTTGATCTTAGGGAAACATGTCTTCGGCGGGT
TGAACGTCAATCATGATGCAATGCATAGTTTTACTCAATTTTCCAGGATC
GCCTCTGGCGCCATGATTCATCAAAGACTAGATTTCCACTGGATTTAAGA
CTCACAATGGATACATCATTGAATACGTTTGGTTCCTTTTATTCATAGTC
TATAGTCCGTCACTTTGAAAAGTTTTTTTCGGTGTACAAGTTTTACTGCT
CGAAAACATCAGTTCGCAGAATCAAATTGTTGCTTTCACTCAAATTATAG
GCTTCCAATAAGCTTTCCCAGTTGTGAGAAATGAAATGAAACATTCAATA
ATATCATAATTCAATCCAAAACAATACATAAGCTCAGTTTCCATGTCAAA
AACACAGCTGATTGCCTCCAAAATGTGAATGTTTTTGAAAATACCACTTC
TTTGGTTACCATCTTTAATTACGTCATATCAAGAAATCCCGGGGAAAAAA
GGCGGTATTGACTTAGACGCCCGGAAAGGGCGTAAAAAGAGCTTTCATTT
GATATGTCATGATGCTATGTTTAGAGCAGCCATACGGAAATGAGGCCCTA
GCAACGGATGCGATTTCCCGTTGCTAAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCAGGGTATGTT
CAGGAAGCATAAAAGATCCTAAAAAGCCCTAAATCCCGAAATTGATAAAT
TTTTCACCAAATTTCAAAATCTCATATGACTACCCCCTTAATCTATACTC
GTAAATATGATCCTATGCTTCTTTCAGGTTACTCGCGACTCGCCATCCCT
CACGAAGACGTCAAAGTTTTGAACGAAGGCTTAAACGAAACCATGCTAAA
CATGAAATTAGATGCATCCATGCTTTTGTTCACTTATGTTCCAAACTGTG
ATGGAAATGCACCTGAAGCTTGGTTCCCAATTCTACAAAGTTACGTCGAT
TTATGCGCCAATGGATTTTTACGTTTCCGAAAAGACGGGCAACCACGCGA
TGCCAGCGACCCTGTTAGACGATTCTTAGACACCACTCATAAATGGTCGA
AATACATGTTAAACGATCGTGTTTTAGCACGTCGACCCTGGGTGAGCGAG
AAAAATCAATTTGTGATTGATGATTACTTAGATGATGAGGATGACGTCAA
CGATATCCCGGCCGCTTTGTATCCGACCGATTTTTCTGTCCGCTTCTTTA
GAGAAATTCAAGAAGGACTTATGACGTGTGGTACTGACCGTAAAAGATAT
GTCTCCGATAATTCGATTTGTCATTAACAAAAAAGTTAAAACTTTAACTG
AAATCATAGGACTTTTTAACTTTAGGGCTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065049-exon-scaffold_428-1575043694:382550..382642 | TCONS_00065049-exon-scaffold_428-1575043694:382550..382642 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1575043694:377201..377481 | TCONS_00065049-exon-scaffold_428-1575043694:377201..377481 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1575043694:374610..375165 | TCONS_00065049-exon-scaffold_428-1575043694:374610..375165 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1510915933:382550..382642 | TCONS_00065049-exon-scaffold_428-1510915933:382550..382642 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1510915933:377201..377481 | TCONS_00065049-exon-scaffold_428-1510915933:377201..377481 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1510915933:374610..375165 | TCONS_00065049-exon-scaffold_428-1510915933:374610..375165 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1491911889:382550..382642 | TCONS_00065049-exon-scaffold_428-1491911889:382550..382642 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1491911889:377201..377481 | TCONS_00065049-exon-scaffold_428-1491911889:377201..377481 | Clytia hemisphaerica | exon |
| TCONS_00065049-exon-scaffold_428-1491911889:374610..375165 | TCONS_00065049-exon-scaffold_428-1491911889:374610..375165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:374610..382642 - |
Blast
The following BLAST results are available for this feature:
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