TCONS_00065025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065025
Unique NameTCONS_00065025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065025 ID=TCONS_00065025|Name=TCONS_00065025|organism=Clytia hemisphaerica|type=transcript|length=2196bp
gcggaaatttcATTTCGcaaatggccgaaaaagttttctcagagtgaatt
taatttggcggatagctGGATAAActaaatttgacgggaatttaatttcg
cggttgcaggTAGTTTGCCAAAATCTtgagttcacaaaaaaagcttcaaa
taagacaaaatagaacagatttacgctgtcattcgccaaaattagaaaTG
TTCAGGATTTTTGCCGCTCGTCAAAACGAAAGACTTTCTTGGTCAAAATT
AGTGTCGCCAAAATAAGGTATCTCTCTAGCCAGATTCAGCCAAGGAATTA
GATTAATTTAATCAAAGAAGAATTCGAGAAACGAGAATATTCCCTTCCAG
GTGCATATTTGTATTTTGAATTGGAGAAATATTACAAGGTGGCAATAACT
TAACGATAACGACGTAAGCTGACCAAATTGTGTTTCTTCCATGTGGCACG
TCTTGAAGATGACTTGACCTTATTATAACCATGTCCTTTGGCAATTCCAC
GGTTTTTGCGTCCAGCAGAAGTAAGTCCTCGTAATTCACGATGCTTATGT
ACGCTTTTGACGATCCAGTTGATGCGTGGATCTCTTCGGATAGCTTTATG
TTGTGGGTCGACCATGATTACTTCGAAATATTTGAAGGTGGAATCTTGAG
CAATCCAGTATGAGTTCAAGACACGGAGACTTCCGCAGTATCGTCCAGCA
CGTTCCTGACatgtaaaacaacaaaaattcatAAGAAAGAATTCTAACCT
GTTCTAATCAATCAGATATATCAGGTCAGACCTTCAAAGTTCTGTTCGTG
TCTCAGATCATGTAGAAAACGCATCACTGGATAAGTCAGTAGAACGGAAA
TCATAATTTTATTCATCATTGACAAAATGTTCAGAAAGATTTTCAGAAGG
GACAGGAAGGGAGGTCAAACTTGTTGATTTTATATAAAGATTTCTGTCAG
ATCATGTAGAAAAACCATCACTGAAGATGTCAGTAGAACGGAAATCACTT
TTTGTTCATCATTCAGAATATCAAATACGCTTTCAGGCATAAACCCTGGT
TATCCAGATGATGTTTTTGGTTTACCGCCTGGTCGTGCTAAAGTAATTTA
CATTCCAATATCTGAAGGCAGCGCATGTAAAGCCTAAAATCTGTCTACCC
TGGGTTAATGAGCATTAAGGTAGACCAAGCTGTAAATATCAGAAACATCA
AAAGACCACACAGCCAATTCTCAAGTGAAGTTATTAGTaaacaaatgata
aaatacaataaaaagcagttaagatttttttttaaattaccaaAAATAGT
AAAACTAGGACATCTCAAAACCCTGCATTTGTAACAATTCTTGTCTCAGC
TCATGTAGAAAATGCATCACTGAATAAGTCAGTAGAACGGAAATCATCAT
TTTATTCATCATTGACAAATTTCAGATTCCCAGAAAGGGGAAGTTCAACT
TGGTTgactttattaaaaaatttctgTCAGATCATGTAGAAAAACCATCA
CTGAAGATGTCAGTAGAACGGAAATCACTTTTTGTTCATCATTCAGAATA
TCAAATACGCTTTCAGGCATAAACCCTGGTTATCCAGATGATGTTTTTGG
TTTACCGCCTGGTCGTGCTAAAGTAATTTACATTCCAATATCTAAAGGCA
GCGCATGTAAAGCCTAAAATCTGTCTACACTGGGTTAACAAGCATTAAGG
TAGACCAAGCTGTAAatatcaaaaacatcaaaagacCACACAGCCAATTC
TCAAGTGAAGTTAGTaaacaaatgataaaatacaataaaaagcagtagtt
aagattttttttttaaattaccaaAAATAGTAAAACAAGGACATCTCAAA
ACCTTGTATTTGTAACAATTCGTGTCTCAGCTCATGTAGAAAACGCATCA
CTGAATAAGTCAGTAGAACGGAAATCATCATTTTATTCATTATTGACAAA
ATTTCAGATTTCCAGAAAGGGGAAGTTCAACTTGGTTGacttaattaaaa
aatttctgtCAGATCATGTAGAAAAACCATCACTGAAGATGTCAGTAGAA
CGGAAATCACTTTTTGTTCATCATACAGAATCTTGGATAGGTTTTCAGGT
ATAATCCCCgcaaaaaatacaataattgTTAGGAAAAATATgttcagtgg
tcaaagcaagattttcgtctgagacggaaaatggattttacacagc
Run BLAST on NCBI

transcript from alignment at scaffold_428:467660..471960+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065025 ID=TCONS_00065025|Name=TCONS_00065025|organism=Clytia hemisphaerica|type=transcript|length=4301bp|location=Sequence derived from alignment at scaffold_428:467660..471960+ (Clytia hemisphaerica)
gcggaaatttcATTTCGcaaatggccgaaaaagttttctcagagtgaatt
taatttggcggatagctGGATAAActaaatttgacgggaatttaatttcg
cggttgcaggTAGTTTGCCAAAATCTtgagttcacaaaaaaagcttcaaa
taagacaaaatagaacagatttacgctgtcattcgccaaaattagaaaTG
TTCAGGATTTTTGCCGCTCGTCAAAACGAAAGACTTTCTTGGTCAAAATT
AGTGTCGCCAAAATAAGGTATCTCTCTAGCCAGATTCAGCCAAGGAATTA
GATTAATTTAATCAAAGAAGAATTCGAGAAACGAGAATATTCCCTTCCAG
GTGCATATTTGTATTTTGAATTGGAGAAATATTACAAGGTGGCAATAACT
TAACGATAACGACGTAAGCTGACCAAATTGTGTTTCTTCCATGTGGCACG
TCTTGAAGATGACTTGACCTTATTATAACCATGTCCTTTGGCAATTCCAC
GGTTTTTGCGTCCAGCAGAAGTAAGTCCTCGTAATTCACGATGCTTATGT
ACGCTTTTGACGATCCAGTTGATGCGTGGATCTCTTCGGATAGCTTTATG
TTGTGGGTCGACCATGATTACTTCGAAATATTTGAAGGTGGAATCTTGAG
CAATCCAGTATGAGTTCAAGACACGGAGACTTCCGCAGTATCGTCCAGCA
CGTTCCTGACatgtaaaacaacaaaaattcatAAGAAAGAATTCTAACCT
GTTCTAATCAATCAGATATATCAGGTCAGACCTTCAAAGTTCTGTTCGTG
TCTCAGATCATGTAGAAAACGCATCACTGGATAAGTCAGTAGAACGGAAA
TCATAATTTTATTCATCATTGACAAAATGTTCAGAAAGATTTTCAGAAGG
GACAGGAAGGGAGGTCAAACTTGTTGATTTTATATAAAGATTTCTGTCAG
ATCATGTAGAAAAACCATCACTGAAGATGTCAGTAGAACGGAAATCACTT
TTTGTTCATCATTCAGAATATCAAATACGCTTTCAGGCATAAACCCTGGT
TATCCAGATGATGTTTTTGGTTTACCGCCTGGTCGTGCTAAAGTAATTTA
CATTCCAATATCTGAAGGCAGCGCATGTAAAGCCTAAAATCTGTCTACCC
TGGGTTAATGAGCATTAAGGTAGACCAAGCTGTAAATATCAGAAACATCA
AAAGACCACACAGCCAATTCTCAAGTGAAGTTAGTaaacaaatgataaaa
tacaataaaaagcagttaagatttttttttaaattaccaaAAATAGTAAA
ACTAGGACATCTCAAAACCCTGCATTTGTAACAATTCTTGTCTCAGCTCA
TGTAGAAAATGCATCACTGAATAAGTCAGTAGAACGGAAATCATCATTTT
ATTCATCATTGACAAATTTCAGATTCCCAGAAAGGGGAAGTTCAACTTGG
TTgactttattaaaaaatttctgTCAGATCATGTAGAAAAACCATCACTG
AAGATGTCAGTAGAACGGAAATCACTTTTTGTTCATCATTCAGAATATCA
AATACGCTTTCAGGCATAAACCCTGGTTATCCAGATGATGTTTTTGGTTT
ACCGCCTGGTCGTGCTAAAGTAATTTACATTCCAATATCTAAAGGCAGCG
CATGTAAAGCCTAAAATCTGTCTACACTGGGTTAACAAGCATTAAGGTAG
ACCAAGCTGTAAatatcaaaaacatcaaaagacCACACAGCCAATTCTCA
AGTGAAGTTAGTaaacaaatgataaaatacaataaaaagcagttaagatt
tttttttaaattaccaaAAATAGTAAAACTAGGACATCTCAAAACCCTGC
ATTTGTAACAATTCTTGTCTCAGCTCATGTAGAAAATGCATCACTGAATA
AGTCAGTAGAACGGAAATCATCATTTTATTCATCATTGACAAATTTCAGA
TTCCCAGAAAGGGGAAGTTCAACTTGGTTgactttattaaaaaatttctg
TCAGATCATGTAGAAAAACCATCACTGAAGATGTCAGTAGAACGGAAATC
ACTTTTTGTTCATCATTCAGAATATCAAATACGCTTTCAGGCATAAACCC
TGGTTATCCAGATGATGTTTTTGGTTTACCGCCTGGTCGTGCTAAAGTAA
TTTACATTCCAATATCTAAAGGCAGCGCATGTAAAGCCTAAAATCTGTCT
ACACTGGGTTAACAAGCATTAAGGTAGACCAAGCTGTAAatatcaaaaac
atcaaaagacCACACAGCCAATTCTCAAGTGAAGTTAGTaaacaaatgat
aaaatacaataaaaagcagttaagatttttttttaaattaccaaAAATAG
TAAAACTAGGACATCTCAAAACCCTGCATTTGTAACAATTCTTGTCTCAG
CTCATGTAGAAAATGCATCACTGAATAAGTCAGTAGAACGGAAATCATCA
TTTTATTCATCATTGACAAATTTCAGATTCCCAGAAAGGGGAAGTTCAAC
TTGGTTgactttattaaaaaatttctgTCAGATCATGTAGAAAAACCATC
ACTGAAGATGTCAGTAGAACGGAAATCACTTTTTGTTCATCATTCAGAAT
ATCAAATACGCTTTCAGGCATAAACCCTGGTTATCCAGATGATGTTTTTG
GTTTACCGCCTGGTCGTGCTAAAGTAATTTACATTCCAATATCTAAAGGC
AGCGCATGTAAAGCCTAAAATCTGTCTACACTGGGTTAACAAGCATTAAG
GTAGACCAAGCTGTAAatatcaaaaacatcaaaagacCACACAGCCAATT
CTCAAGTGAAGTTAGTaaacaaatgataaaatacaataaaaagcagttaa
gatttttttttaaattaccaaAAATAGTAAAACTAGGACATCTCAAAACC
CTGCATTTGTAACAATTCTTGTCTCAGCTCATGTAGAAAATGCATCACTG
AATAAGTCAGTAGAACGGAAATCATCATTTTATTCATCATTGACAAATTT
CAGATTCCCAGAAAGGGGAAGTTCAACTTGGTTgactttattaaaaaatt
tctgTCAGATCATGTAGAAAAACCATCACTGAAGATGTCAGTAGAACGGA
AATCACTTTTTGTTCATCATTCAGAATATCAAATACGCTTTCAGGCATAA
ACCCTGGTTATCCAGATGATGTTTTTGGTTTACCGCCTGGTCGTGCTAAA
GTAATTTACATTCCAATATCTAAAGGCAGCGCATGTAAAGCCTAAAATCT
GTCTACACTGGGTTAACAAGCATTAAGGTAGACCAAGCTGTAAatatcaa
aaacatcaaaagacCACACAGCCAATTCTCAAGTGAAGTTAGTaaacaaa
tgataaaatacaataaaaagcagttaagatttttttttaaattaccaaAA
ATAGTAAAACTAGGACATCTCAAAACCCTGCATTTGTAACAATTCTTGTC
TCAGCTCATGTAGAAAATGCATCACTGAATAAGTCAGTAGAACGGAAATC
ATCATTTTATTCATCATTGACAAATTTCAGATTCCCAGAAAGGGGAAGTT
CAACTTGGTTgactttattaaaaaatttctgTCAGATCATGTAGAAAAAC
CATCACTGAAGATGTCAGTAGAACGGAAATCACTTTTTGTTCATCATTCA
GAATATCAAATACGCTTTCAGGCATAAACCCTGGTTATCCAGATGATGTT
TTTGGTTTACCGCCTGGTCGTGCTAAAGTAATTTACATTCCAATATCTAA
AGGCAGCGCATGTAAAGCCTAAAATCTGTCTACACTGGGTTAACAAGCAT
TAAGGTAGACCAAGCTGTAAatatcaaaaacatcaaaagacCACACAGCC
AATTCTCAAGTGAAGTTAGTaaacaaatgataaaatacaataaaaagcag
tagttaagattttttttttaaattaccaaAAATAGTAAAACAAGGACATC
TCAAAACCTTGTATTTGTAACAATTCGTGTCTCAGCTCATGTAGAAAACG
CATCACTGAATAAGTCAGTAGAACGGAAATCATCATTTTATTCATTATTG
ACAAAATTTCAGATTTCCAGAAAGGGGAAGTTCAACTTGGTTGacttaat
taaaaaatttctgtCAGATCATGTAGAAAAACCATCACTGAAGATGTCAG
TAGAACGGAAATCACTTTTTGTTCATCATACAGAATCTTGGATAGGTTTT
CAGGTATAATCCCCgcaaaaaatacaataattgTTAGGAAAAATATgttc
agtggtcaaagcaagattttcgtctgagacggaaaatggattttacacag
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040765XLOC_040765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065025-exon-scaffold_428-1491911889:467660..468892TCONS_00065025-exon-scaffold_428-1491911889:467660..468892Clytia hemisphaericaexon
TCONS_00065025-exon-scaffold_428-1510915933:467660..468892TCONS_00065025-exon-scaffold_428-1510915933:467660..468892Clytia hemisphaericaexon
TCONS_00065025-exon-scaffold_428-1575043694:467660..468892TCONS_00065025-exon-scaffold_428-1575043694:467660..468892Clytia hemisphaericaexon
TCONS_00065025-exon-scaffold_428-1491911889:470998..471960TCONS_00065025-exon-scaffold_428-1491911889:470998..471960Clytia hemisphaericaexon
TCONS_00065025-exon-scaffold_428-1510915933:470998..471960TCONS_00065025-exon-scaffold_428-1510915933:470998..471960Clytia hemisphaericaexon
TCONS_00065025-exon-scaffold_428-1575043694:470998..471960TCONS_00065025-exon-scaffold_428-1575043694:470998..471960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:467660..471960 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.220729	0.0522552	0.070191	0.0420168	4.09404	3.00482	2.83855	2.18148	0.983777	1.56435	0.3554	0.988441	1.04231	0.867635	0.892657	1.43452	1.6541	0.863011	0.249514	0.857557	1.70606	1.65018	0.659801	0.364852	0	0.817816	2.60271	1.41421	1.52248	1.37995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000439Ribosomal_L15e
IPR024794Rbsml_L15e_core_dom
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00065025 vs. Swiss-Prot (Human)
Match: RL15 (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.208e-40
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = -1 
Query:  403 TCQERAGRYCGSLRVLNSYWIAQDSTFKYFEVIMVDPQHKAIRRDPRINWIVKSVHKHRELRGLTSAGRKNRGIAKGHGYNKVKSSSRRATWKKHNLVSLRRYR 714
              +ERAGR+CG+LRVLNSYW+ +DST+K+FEVI++DP HKAIRR+P   WI K VHKHRE+RGLTSAGRK+RG+ KGH ++     SRRA W++ N + L RYR
Sbjct:  101 VAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204
The following BLAST results are available for this feature:
BLAST of TCONS_00065025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL152.208e-4062.5060S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
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