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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065013 ID=TCONS_00065013|Name=TCONS_00065013|organism=Clytia hemisphaerica|type=transcript|length=1362bp
ataacaatgccaaccatcaaGAATCGGATGAAGAGATTGATTTTACAAAA
CCTTTACCTAAAGACTTTATGCCAGAAGACATCAATCAACCACTAACTCA
AGAAGATGAAACAACTCAAGAATCTGGTAATgaggaaagtgaaagtgaaa
gtggagGTGTCAGTCAAGAAGAATATCCTGAAGAGGATACGTGCTGTGAA
CCACCAAAACCAAATGGTGATAATCAATTCAAGAAAAAAGCAGTTGCTGT
TATGATGATCTTCCCTATGATTGTTACTGCATTCATCACCATTGGAGACA
CACTTGATAAATTCAAATTAGATAAAACAGCAATGCAGGTCACAGCTACT
ATTGGAGGTGCTGGCATCGCTTTGTATGCAATATCCAGGATCCCGCAATT
GAAAGAAGCTGTCAAATTTGTGATTTGTTTTTCTTGGCTTGTCTTTCTGT
ACCCGACATACCAGGTTTATACATGTTCACCTATTGAGATGAAAAATAGT
ATGATTGGTACCTGGTTTAAATTGGCTACAACACCGAACGATTTCTTGGA
GAAATCTTACGTAGCAAGTGAATGTTTTAACAAGCAAAAGCTTCAATCGC
CTTACATGATGTCCGCACTGGCCGCCAAAGTGTCTTTGGTCATCCAAATC
AATGATTTGATTAACTTGAAAGGCCAACAAAAAGAAGGAGATGAGGATCC
TGGAGATGTTGGTTACTTTTTGGCAGTATCCAAGAGAAGCGTCAAAAAGA
AGTTCCATAAATTGTATCTCATTATAGAGGCTGATGACAAGTTGGCTCAA
ATGTTGACTAGAGCTTTGACATTGGATAGCAAAGAGAAAGATAAGAACCT
GTTAGTAATGACTGGTTCAGTTATGACATTGGAAGATGAATTATtgccaa
tgaaaaaagaattggaaaagATGCAATATCTTGTTCGACCAGTCAAATTC
AAAGCTACCAAAGTAGTTTATCGTGATAAATATGCCAAATTGAAACATGT
AGATGAAAGTCTTTACTAGAAAGACTAGGGAATTCATTTTAGAATCATAC
TAAATCtgactaaatttaattttctttctttatttgtGTGTCTATGTTTT
TTTGCAGAcctaaaaaaaaagtatttaaagtcgaagagatgttgaaaaat
atatacttgcacattttgaaattttcaattgattttgaaaaatctgcaGA
GTGGTAAAATCTTCCAAGCGTGGTAggatttgtttaattttttttaattt
cttagcTTTATAGATTTTCAATGCCATTTATAGAGGCCTCCCTTTTATAT
AATAAACTTTAATGAACAAAATATCGAAGAATCTTAGGGGACATTTATAT
ATTTCATTCTTG Run BLAST on NCBI transcript from alignment at scaffold_428:351667..358206+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065013 ID=TCONS_00065013|Name=TCONS_00065013|organism=Clytia hemisphaerica|type=transcript|length=6540bp|location=Sequence derived from alignment at scaffold_428:351667..358206+ (Clytia hemisphaerica)
ataacaatgccaaccatcaagtatagttcaattttcaaattataaataaa
taataatgcAGAGCCAAAACCGCAACTGGAACCGGaactttatatttctt
ttttccctaaacccctccccccatcaacaatcaatgatgaaatttaatgc
attttcgctatcCGCTATATTTTCTATATTGTCTATTTAGAAAAGGGCTT
AgctatttaaaacattttccgaCATTATTGTGACTTAGCCAACTCaggat
ttatgttttgaaggtAAGTCGGTCGGACGACGCTAACAGACCATATTAAT
ATTGATGGTCGCCtacgttggtctaatgttgacatccctcttctaatttc
gacaccctccTTTAGAGAAGGTCTGAATCACTGGTAGACAAAAGATTTAT
TCTTCTCTGATCACTAAGCAAAGGAAATTACTTTCAATTAGTGATTCCAA
CCTTCCCAATATTCCTTTCCCTTAAGAACAGTGCCGTAGCCACGGGGGGG
GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTGtagcaaatttcgattttaaacaccca
cccacccctatagtacaaaatgtacaaaatactatccagcaaactcccaa
aaacaccccaacaccccctacattttacaatatactatccagcactatcc
agcaaactcccaaatacaccctgacaccccctgtataatataatatacta
tcaagcaaactgccaaatataccccaacacccccttacatagtacaatat
actatccagaaaactaccaaatatacccctacaccccttcataaaataaa
aattttaagccaaaaaccttgaaactttggggcaagttttttattcttcc
cataaaaaaattttcaaaaaatgttctcgaaaattgacaaaaacaattga
gaatttgaaaaaattttgacaaaaatctaaaataaatcacaatttgattt
gattttggctttttagtacacaaatactatgcagaaaatccgaaatttga
ccctgacaccccctgtatagtACACGTATACTAAACAAcaaatcagaaat
ttgaccGTGACACCCCCATGTATAGTACACAAGTACTAAACAgcaaataa
tttttgaaaacacccacccaccccatgatacatgccgcttttttgtacat
ggaccccccctGATTTGATTTATTTGCTTAATCTCTTCCCTCTTTTTACC
ACTTTTACGTTGAGCCAATGCGTGCCACATAACGAAATAACTAACTAAAG
CACTAACGATGTAAGAAGATAGTcttatgatttgaaaatatactaATATG
CACGCGGTTACTACTTGCCTTTTGCTGAAAATTGACTTTCGGAGAGGCAG
TTTTAGCCAATCTGGacagggggggtcatgcagttactcCGTGACACTAT
GATGAGTAACTgccattttggaaaatttcttgtcacaccaccaccaccaT
TACTTACTCCActgtggagtaactgtttttaGTGCTCAAAAAGGGGTACA
CCACCCCATAAAACGGGTAATTTGCAGCTTTTTTAGATATATAAGACATA
CCCActggtcaaattttttttttgatttttgtatttaaaaGAATCGGTGG
AATAAGTTTATATACTTGGTTAAAGCATTCCACGATTTCTATTTTCATAA
ATATgacgaaaaatttattttcatggaaaaatttcagatatttttccaaa
aacaattcaatttttcttcgaaaaatttcaaatttttgacaaaaatttag
ggaaatttttcaaaaaagtgaaaaaatgtgCACTTTCTCCACTTTGGAGT
AactgttttaaatgtttttagtTGTTACACCACCACGTACTAAGTGCCAT
AGTGTTCACAtagtaactgcatgacccccccccctgatctgGAGGGTATT
AAAGTCCAAAGTTTTTCCTAgcccgtcggccccaaccacGGTGGGGCCTC
CTTAGATACTAAACATATAGGGCCCCCCCTAAAATATAATTTGTGTCTAC
GGCACTGAtagaagggtgtcaaaattagaagagggatatCAACATTAGAC
AAACTTTTGGTAGTTAATCACTCTTTACTTCAATGGATGCAACTAAAACC
AGTGAGAAATTAGATATTACCTATAAATAAGTTttgttttgttagtttta
aacAGTCTCAGGCTTTATAACTCCTATaccaggattagaaactaggccag
tcttatttcttatttttgcctttaCATCAATACAATAATGTTAACAAGTT
GAAACAACCTATTGACAAAAAAATCCCtgtgagaagtttatatcgaaaCT
TGCAACCAATACAAAATGGTTTCTTCTATTGATTGCTTCCTGGCGCTCCT
TCGCAGctatttatcaaatttccatcAATAAGATTGCCGCATTTCACATG
GCATTTCAAAGTcctgtaaaaaatcattaagtaaaagaagaacttaaaat
ctgaaatattttcattttaaagaattgtatggaaaagttttattttttat
tgctttgaTGGGGGATTTGGAAGATTTTCTGTGTTTGATATTTTGTAAAa
gcccctgtaactatgggcaagcaccctgttgctaagatgttagCTTGAAA
TCGAtaatgaaaccactgaaaacaaaagtaaaattggCTCGCTCTCcaaa
tcctgtaatcttgatataggagtttaaagTCTATATGTTAAAGGGGAAGA
AAAAAGAGGTAAGATTAGTTAGCCTAGTTCTTATTCTAATCTTGATATAG
GTACTGTATGTTGAAATGTGATGAGAGTAAATGGCATTATTGCACTtgag
tcccggggggggggggggggggtccataGGGGgccccccccctggattca
ggggggggggttgaggattttcagatttttaaaaataggtgggggttggg
ttgatgagaaatttcaggtgggggtaaccctatgtaggtgggggtaACAT
TTTTCAGGTTGGGGTTGTCAAGTTTTCTGTATTTAACTTCGTtagatttt
gtacttttttgtctttttcaacttCCCACATACTATAGTTTCactagata
aaaatataaacaaatgactGTCTTAAGTTCTGAAGGTTAAAAAGAGTTTA
TTTTTTCTCCAGTCTTTTCCTTTCCAGTTTGTAGTCCTCAGGACTTTTAA
CTGGGATCTTTAGTGTTCCTAAAAGGAACAAGACCTCCAAATTCGAAGGT
GTGATTCGATTGGGCCGATTTGCGCATATGAGTTGGAGTATGGTGTAGCC
CCTTTCTACCGGCGAGGTTGCTGAAAAAGGTGGGGGTTGAGCTGATATga
gatttcaggtgggggtaaccctatgtaggtgggggtgacctttttcaggt
gggggttggaggggtgttgcCCACTATGGTGATTTTTCAGATCTACATTG
GTGATCCAATCTGGATCTCAAAAAATTGGTTCTTCTCTAGGATTCAGTAG
CATATGTGCCAATTGGTAGTATTAGAGCCTGTATAGAACTGTAACTTCAA
GTTTCGATTGATATCATTTCTAGACCAGATGCTATCTTTTAGTCTTCCGA
AGGCTGACGAGGCAACTATGATTCTTCTGTTTACGTCCGACCTGGTGCCA
GTATCATCACACtgcaaaagaaaacaaattctttacttttttcaacACGG
CTGCCACATTCTTTTCTTACGTAAACAATAAAGTACTTGGCACACCTCTC
TACAGAAGGCTATAAATAATGTCAGATTGTCCATTCTGGGCATAACAcac
ttacatccctgtctcagtaacccgGTAGATTTTAAATGCTCACTGGGGTG
GCTAAAAAATAACAGGATTTCACCGGGGTAGATTTTTTGACGGAATAAAT
TCACCGGGTTGGAAAATTTGAGGTAAAGTTTCACCGGGGAacagtttttt
tatataaagaccagcaaaattttttgatgctAGGACCTCTCTACTTAAGC
CTCAAATTATTCTAATGCTTTTCTTGAGGCTAATATTGAGACATTTCAGG
TTTATATTCCCTGTTTTTACTAATATATTATGGGCATGTGCAACTTGTAA
AACTGTCTTAATTTTGCATGATTTAATTAAACAGAAAATAGCCATAAATT
TTGAACTACTCATCAGATTGACCTTGTATTTAGAATGTAGACTCACTGGA
AGCCTTGAAATaggttgataaaaaaataattccaaaaataTCCTGGTTCA
ATTTTTCAGGACAGAGTGATGAGCATTTCCTTTTATAGACCGGGGTGACC
TAAAAAGAATGATATTTGACCGGTCCTCGactttaaatttctaaaatttg
atcgggtttaaatttttgattattttttgactGGGGTTGCCAATTTTCCA
CCAGGGACACATTTTTGCctgtttttaggcatttttttcTCCGGGCTACT
CACCGGGTTGGATCTGACCGGGCCACTGACTCAGGGGTGTACACTTGACT
TGGTTTTATTAGCGTGATTATTTTGCTTTAACCAATTACTGTGCTAAACT
CTTAATATTCATCCTAAATGTTGATGAAAGATGTTCAACAACCTAGGCAG
ACTCTCTTACAGAGCCAGAGCCATGGCATCATGGATCATACATGTCGGGG
CGCAGAGTATCAGAAcacaaaatatatttctttccaattttatcgaaaat
tttgaaaaatcccttggaaaatgaaagaaatttgtccaaaaaagggcaaa
actgcgaaaattaaaGCTCACAAAtagcaatttttctgatttttttttaa
ctgcGAATATTAGTTCCTGCAAAAAtaagttccaataaggtaattaCTAA
ATCTAAAAAGAGTCGGACAGAACTTAATATAAGGTCTAAGAATGAAAACC
TCTTAtctaatgaaaaatatttatcacAGGCTCGTCtcataaaagtattt
tttttgataatCGAGGAGGTTTATTTTGTCGTTTCTTTCAAATTTCAGGA
ATCGGATGAAGAGATTGATTTTACAAAACCTTTACCTAAAGACTTTATGC
CAGAAGACATCAATCAACCACTAACTCAAGAAGATGAAACAACTCAAGAA
TCTGGTAATgaggaaagtgaaagtgaaagtggagGTGTCAGTCAAGAAGA
ATATCCTGAAGAGGATACGTGCTGTGAACCACCAAAACCAAATGGTGATA
ATCAATTCAAGAAAAAAGCAGTTGCTGTTATGATGATCTTCCCTATGATT
GTTACTGCATTCATCACCATTGGAGACACACTTGATAAATTCAAATTAGA
TAAAACAGCAATGCAGGTCACAGCTACTATTGGAGGTGCTGGCATCGCTT
TGTATGCAATATCCAGGATCCCGCAATTGAAAGAAGCTGTCAAATTTGTG
ATTTGTTTTTCTTGGCTTGTCTTTCTGTACCCGACATACCAGGTTTATAC
ATGTTCACCTATTGAGATGAAAAATAGTATGATTGGTACCTGGTTTAAAT
TGGCTACAACACCGAACGATTTCTTGGAGAAATCTTACGTAGCAAGTGAA
TGTTTTAACAAGCAAAAGCTTCAATCGCCTTACATGATGTCCGCACTGGC
CGCCAAAGTGTCTTTGGTCATCCAAATCAATGATTTGATTAACTTGAAAG
GCCAACAAAAAGAAGGAGATGAGGATCCTGGAGATGTTGGTTACTTTTTG
GCAGTATCCAAGAGAAGCGTCAAAAAGAAGTTCCATAAATTGTATCTCAT
TATAGAGGCTGATGACAAGTTGGCTCAAATGTTGACTAGAGCTTTGACAT
TGGATAGCAAAGAGAAAGATAAGAACCTGTTAGTAATGACTGGTTCAGTT
ATGACATTGGAAGATGAATTATtgccaatgaaaaaagaattggaaaagAT
GCAATATCTTGTTCGACCAGTCAAATTCAAAGCTACCAAAGTAGTTTATC
GTGATAAATATGCCAAATTGAAACATGTAGATGAAAGTCTTTACTAGAAA
GACTAGGGAATTCATTTTAGAATCATACTAAATCtgactaaatttaattt
tctttctttatttgtGTGTCTATGTTTTTTTGCAGAcctaaaaaaaaagt
atttaaagtcgaagagatgttgaaaaatatatacttgcacattttgaaat
tttcaattgattttgaaaaatctgcaGAGTGGTAAAATCTTCCAAGCGTG
GTAggatttgtttaattttttttaatttcttagcTTTATAGATTTTCAAT
GCCATTTATAGAGGCCTCCCTTTTATATAATAAACTTTAATGAACAAAAT
ATCGAAGAATCTTAGGGGACATTTATATATTTCATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065013-exon-scaffold_428-1491911889:351667..351686 | TCONS_00065013-exon-scaffold_428-1491911889:351667..351686 | Clytia hemisphaerica | exon |
| TCONS_00065013-exon-scaffold_428-1510915933:351667..351686 | TCONS_00065013-exon-scaffold_428-1510915933:351667..351686 | Clytia hemisphaerica | exon |
| TCONS_00065013-exon-scaffold_428-1575043694:351667..351686 | TCONS_00065013-exon-scaffold_428-1575043694:351667..351686 | Clytia hemisphaerica | exon |
| TCONS_00065013-exon-scaffold_428-1491911889:356865..358206 | TCONS_00065013-exon-scaffold_428-1491911889:356865..358206 | Clytia hemisphaerica | exon |
| TCONS_00065013-exon-scaffold_428-1510915933:356865..358206 | TCONS_00065013-exon-scaffold_428-1510915933:356865..358206 | Clytia hemisphaerica | exon |
| TCONS_00065013-exon-scaffold_428-1575043694:356865..358206 | TCONS_00065013-exon-scaffold_428-1575043694:356865..358206 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:351667..358206 + |
Blast
The following BLAST results are available for this feature:
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