TCONS_00064995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064995
Unique NameTCONS_00064995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064995 ID=TCONS_00064995|Name=TCONS_00064995|organism=Clytia hemisphaerica|type=transcript|length=703bp
GGGCGAAGCAAGAAAAGTCCAATATAAGAAGCTTTTCATCAACAACGAGT
GGTGTGATTCGATCAGTGGCAAAACATTCCCAACAATCAACCCTGCAACT
GGAAAAGTAATCTGTCATTTACAAGAGGGAGATAAGGCGGACGTCGATCT
AGCTGTGAAAGCTGCAAAAGATGCTTTTGAATTTGGATCAGAATGGCGCT
CTATAGCAGCAGCTCAAAGAGGTGCTCTTATCGAAAAATTAGTGGAATTA
GTGCAAAGAGATCAGGAGCCAATAGCGGAACTGATCACCACAGACATGGG
CAAAACCATCACTTGGTCCAGGAAAGAAACTGCCTTATCCGTAGCAATTC
TTGCATATTATGCCGGATATTGTGATAAAATCTGCGGAAAGACTCTCCCG
CCCAGTCTTGCGTcagAGGATGCGTTTTTCGCGTACACAAAACAAGAGCC
AATTGGTGTTTGTGGTGCCATTACAACCtataattttccattgcTCATGA
TGGTTATGAAGATAGGACCAGCATTAGCCTGTGGGTGCACCATGGTCATG
AAGGCTGGAGAACAATCACCCTTAGTCGGTCTACACATGGCTGCTCTAAT
CAAAGAGGCTGGATTTCCACCAGGTGTTTTCAACCTTATCAATGGTTATG
GACCGACCGTTGGAGCTGCTATTTCAGAACATATGGATATCGCTAAAGTA
GCA
Run BLAST on NCBI

transcript from alignment at scaffold_428:165268..169059+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064995 ID=TCONS_00064995|Name=TCONS_00064995|organism=Clytia hemisphaerica|type=transcript|length=3792bp|location=Sequence derived from alignment at scaffold_428:165268..169059+ (Clytia hemisphaerica)
GGGCGAAGCAAGAAAAGTCCAATATAAGAAGGTACATTCCCAACTGGCCC
ACAACGTTCttacaacgttcatctaacttTATATGGATGTTGCGAACAta
agataaacgttgaaacaatttTGTGGGCCAGCTGAGTTAGTTACGATTGT
TAATTTTGATGATTAACAGTTTCAAAACCGCTGGTCCAtcctttttttca
gaaattacaTTCCTCagtaaaaaccacatcaaaataCTTTTTGCGTTTTT
GGACAGAGTTTAGTGTGATTTTTGAGACAATTTCATTTAAAACCCATACA
GGAGGGTGAACGAaactttttaagcaaaaagtgaaaatgtacggataccc
cctggaaaataaaaaattataaagtaaacccttggaaaaatcttcatcat
accttaaagtgagggtggacgaagtAAAACCAGTCTTTGGAAGTTTTACA
ATATTTGTTTACCCCTGGAACTATGAAAAAACTTTCCTTAgacccctgga
aattcttcttggGATCATCCCcgaaaggttcgtccaccctaCCCCCTGTa
tgaatataaaatgaaatgactTTTTGAGTACAAAATTTCCATGTTTTACT
GTTATCTGGCTTTTTTACGAGATGCTTTATTAAACATCCTTTTATGGTTT
CTACCCTTTTTACTCCATCTAGCTTTTCATCAACAACGAGTGGTGTGATT
CGATCAGTGGCAAAACATTCCCAACAATCAACCCTGCAACTGGAAAAGTA
ATCTGTCATTTACAAGAGGGAGATAAGGTTCGGTTTCTTCTCATAAGTGT
GCATTCTTTaaacgttttgtttttaaataagagtgatatcttttgcttac
tcatcaattttaattaaatttaatttaaagctttttcacattggattaac
acggatgtggagcaagattggtaaagagaaaaattattttttctttccat
CAATCAGCACAATATATAAGGGAGAcattgtcctgatatgaaatgttcgt
ctaatatgaaacggaaacacttagaTAAAtaataaaaccttttttacCCC
AGTGGCACTATAATGGTATGGTATATTTTTTCAAGTTACTGAAGTCTTCC
CTTCTTCTCTGTAACAGGCGGACGTCGATCTAGCTGTGAAAGCTGCAAAA
GATGCTTTTGAATTTGGATCAGAATGGCGCTCTATAGCAGCAGCTCAAAG
AGGTGCTCTTATCGAAAAATTAGTGGAATTAGTGCAAAGAGATCAGGAGC
CAATAGCGGTAAGTTTTGCTAAGAACAATCTATGTCTTTGAAATAACCTA
GAAAAGACTGAATTTTAAGTCCTTTAAAGTACCGAAAACAGGTGTTCAAA
GATGAATTTAAAAACTCGcttaatgggcttttccagaaaaaatttgaata
tgggggtggaggatacaacattattttggaaattttcccccccccccttc
cccggacaagcatcagttgaccccatggacaatcaaaattaccttcaaac
agagaaaaattacccccaaacagagcaactTTActcccggacaaggcaaa
ttttgtagatttttcactgttCTCCGGACACTTTGTCCTCCACCcccacc
cccatgtacggacattttctggaagagcccaatgtctGAAGATTGAAAAG
AATAACAACCGTATAGCCTGAAAATTCAATGACTCTTTCTTTTAAAGCGT
GTTTCTCTTTCAAGGAACTGATCACCACAGACATGGGCAAAACCATCACT
TGGTCCAGGAAAGAAACTGCCTTATCCGTAGCAATTCTTGCATATTATGC
CGGATATTGTGATAAAATCTGCGGAAAGACTCTCCCGCCCAGTCTTGCGT
caggtacatgttttttttaaggtGTACTCTCGCTCAATAGTACTTTGACT
AATTTGCAAGAAGTGTCAAAATTagaattattttgtaatttagTAAATCT
AGCAAAGATCTAAGCAGGACAAATGTGAAAAAGATTTAATGAACGGAAAA
CGAAAACGTTTGGGCCTGGAAACAGTGCAGGGCCTGGCAACAGGTTTGTC
ATACTTTCAGATCGAGAGATtgacaaggctgaaaaatgcttaaaGGATGT
TTATTCTAAGCAAATTTTTTAGCGTATGCTTAATCTTTGCAATATCTGAG
cctatgcttataagtgcaatgcttataaaaagaaacatgtatAATATTAT
TGTTCTCTATTCTTACAGAGGATGCGTTTTTCGCGTACACAAAACAAGAG
CCAATTGGTGTTTGTGGTGCCATTACAACCGTAAGTGTTTTCCTATAATA
AATATCTTTTGCTGCAGAAAATGATATGCCTGATATGGTACATAATAAAC
TTGCTTTTGTGAAACTCCCTTTTTCACATAATAATTTCACATAAAGGGTC
CACATATTACGCTCTATAAAAGTCAAATGTCAGGTTATCTGAATTGCGGA
AAACACAGGGAAAATGTTATTTCTAAGGGGGCGGgtagattttgcaaaaa
agggGAGGGTAAAAAGTTTTACAAAAGAAGGGTTAGAAGGTTAGATCCCT
CCTCGCTTTCTATCGAAAATCGGTAATTTAATTGTAACACTGATTTTTGC
ATCGATTCCATGATTTTCCAATTGACAATGGTTCTCTCTGTATTGTCTCT
TTCTTTTTCAcagtataattttccattgcTCATGATGGTTATGAAGATAG
GACCAGCATTAGCCTGTGGGTGCACCATGGTCATGAAGGCTGGAGAACAA
TCACCCTTAGTCGGTCTACACATGGCTGCTCTAATCAAAGAGGTATCAAA
TCAAACttcaaatgaatttttgatcaTCGAGCgttatcactgtgaagaaa
tttctcaaaaataatcattcagtcaaaagatatcaaacaaagttataagc
tgattgacatctaaaaacgctgttgtttgctgttttttgggatCAATCAC
TTATtgactttgtatcataactttatattgaattaATGTTTTAGTGAaac
tttttcacagtgatgaccacctaagatcaaagaatctctccagtgagaat
gaaagttatagcacttttctacaagatcttcatttttttcttctttatat
tcatcttcgtttttaggatttttttaaagacttttttatttcaaattgtt
ccactcacaaatatctctccaatgataccaaatttataaagattgaagaa
ttccttcaaaagttataggtaaaagaaaaaagagtgcacacttatcgtga
acagactttagtataaaatactttctgtaattcgaagaaaGTTCTTGGGC
CCTTGAagaaagatcgaattagagaaagagtcAACTATCTATCAAATTTA
AAAGGTTTGAGGAGTCCGGTTCGGGGTTTATCAGAAAGGGTTAGTGTCAA
ATGTCCAAAGTTATTGCATTGATTTTTACTCTTAGATACACAATTTCGAC
GGCCTTTCTTCCTGGTGAACTCGATCCTTTGTTACATTTTGAGTTGATAG
GTGTGTGCATCTCACCTTGAAGCAGCGTTCTCATCATGCCTGTTGGTTTA
CGAATTTACACGCCTTTTTATttacaagaacaattttataagaacattag
atCTATTAGAGCAATAGAAATTTAAGATTAATCTCAggctcagccaaaat
ttactgtttaaaaaaaaagcgtgtatcatcCATTTATTCCCTTTAGGCTG
GATTTCCACCAGGTGTTTTCAACCTTATCAATGGTTATGGACCGACCGTT
GGAGCTGCTATTTCAGAACATATGGATATCGCTAAAGTAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040754XLOC_040754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064995-exon-scaffold_428-1491911889:165268..165298TCONS_00064995-exon-scaffold_428-1491911889:165268..165298Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:165268..165298TCONS_00064995-exon-scaffold_428-1510915933:165268..165298Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:165268..165298TCONS_00064995-exon-scaffold_428-1575043694:165268..165298Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:165940..166044TCONS_00064995-exon-scaffold_428-1491911889:165940..166044Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:165940..166044TCONS_00064995-exon-scaffold_428-1510915933:165940..166044Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:165940..166044TCONS_00064995-exon-scaffold_428-1575043694:165940..166044Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:166385..166525TCONS_00064995-exon-scaffold_428-1491911889:166385..166525Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:166385..166525TCONS_00064995-exon-scaffold_428-1510915933:166385..166525Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:166385..166525TCONS_00064995-exon-scaffold_428-1575043694:166385..166525Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:166982..167120TCONS_00064995-exon-scaffold_428-1491911889:166982..167120Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:166982..167120TCONS_00064995-exon-scaffold_428-1510915933:166982..167120Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:166982..167120TCONS_00064995-exon-scaffold_428-1575043694:166982..167120Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:167486..167547TCONS_00064995-exon-scaffold_428-1491911889:167486..167547Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:167486..167547TCONS_00064995-exon-scaffold_428-1510915933:167486..167547Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:167486..167547TCONS_00064995-exon-scaffold_428-1575043694:167486..167547Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:167931..168059TCONS_00064995-exon-scaffold_428-1491911889:167931..168059Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:167931..168059TCONS_00064995-exon-scaffold_428-1510915933:167931..168059Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:167931..168059TCONS_00064995-exon-scaffold_428-1575043694:167931..168059Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1491911889:168964..169059TCONS_00064995-exon-scaffold_428-1491911889:168964..169059Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1510915933:168964..169059TCONS_00064995-exon-scaffold_428-1510915933:168964..169059Clytia hemisphaericaexon
TCONS_00064995-exon-scaffold_428-1575043694:168964..169059TCONS_00064995-exon-scaffold_428-1575043694:168964..169059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:165268..169059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279543	0	0.200023	0.0965576	1.23357	1.8554	0.239125	0.605973	0.468163	0.103655	0.292336	0.695941	4.88276	13.3964	2.71864	1.10406	0.458229	1.53482	0.431556	0.35743	0.348504	0.120771	0.28718	0.349318	0.64793	0.944468	0	0	0.0901471	0.189819
Blast
[Close]
BLAST of TCONS_00064995 vs. Swiss-Prot (Human)
Match: AL1A1 (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 9.166e-76
Identity = 127/231 (54.98%), Postives = 170/231 (73.59%), Query Frame = 2 
Query:   14 KVQYKKLFINNEWCDSISGKTFPTINPATGKVICHLQEGXXXXXXXXXXXXXXXFEFGSEWRSIAAAQRGALIEKLVELVQRDQEPIAELITTDMGKTITWSR-KETALSVAILAYYAGYCDKICGKTLPPSLASEDAFFAYTKQEPIGVCGAITTYNFPLLMMVMKIGPALACGCTMVMKAGEQSPLVGLHMAALIKEAGFPPGVFNLINGYGPTVGAAISEHMDIAKVA 703
            K+QY K+FINNEW DS+SGK FP  NPAT + +C ++EGDK DVD AVKAA+ AF+ GS WR++ A++RG L+ KL +L++RD+  +A + + + GK  + +   + A  +  L Y AG+ DKI G+T+P     +  FF YT+ EPIGVCG I  +NFPL+M++ KIGPAL+CG T+V+K  EQ+PL  LH+A+LIKEAGFPPGV N++ GYGPT GAAIS HMDI KVA
Sbjct:   17 KIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIP----IDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVA 243
The following BLAST results are available for this feature:
BLAST of TCONS_00064995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A19.166e-7654.98Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
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