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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064991 ID=TCONS_00064991|Name=TCONS_00064991|organism=Clytia hemisphaerica|type=transcript|length=2997bpRun BLAST on NCBI protein sequence of TCONS_00064991-protein >TCONS_00064991-protein ID=TCONS_00064991-protein|Name=TCONS_00064991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp PPFLPALTPNTKNEKWLKSLFILVGRVNLVHRTCPKIKMATQVRALYDFERun BLAST on NCBI transcript from alignment at scaffold_428:116588..132961+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064991 ID=TCONS_00064991|Name=TCONS_00064991|organism=Clytia hemisphaerica|type=transcript|length=16374bp|location=Sequence derived from alignment at scaffold_428:116588..132961+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_428:116588..132961+ >TCONS_00064991 ID=TCONS_00064991|Name=TCONS_00064991|organism=Clytia hemisphaerica|type=CDS|length=29376bp|location=Sequence derived from alignment at scaffold_428:116588..132961+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064991 vs. Swiss-Prot (Human)
Match: SNX9 (Sorting nexin-9 OS=Homo sapiens GN=SNX9 PE=1 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 1.277e-100 Identity = 200/599 (33.39%), Postives = 305/599 (50.92%), Query Frame = 3
Query: 117 MATQVRALYDFEGDVNNGELTIREGDIIVVTNQDIGDGWWEGTINGGTPGLFPYGYVEVLGTPAVP------SISVQA-----------------TNHFDQGSSE--------------SSHDSWGQQEQPDGQLE----PREWNDS-------------------------RSSCSDTISQGDDSFGNLPRSNTMSRSGTVKKSINRFSDFVKSGGEDFLLGNKGDGDIPQYDQLMTIDGPDGTMWQPASIPFTIKITEPEKKSKFKGMKSYISYQIQPSHTSVSVAHRFKHFDWLHERLTNKF-PCISVPPLPDKQLTGRYSEDLVKKRRYLLEKWINRVARHPVLAESSVFQHFINVCSEQREKEWKEGKRKAEQDKIVGAHFFYTITAQQMNLPPHKVEIEVDTFKDFVKNMDESTKKMIEIGENNWDKVSRGHKKEYKHLSSGFESIASSFVTDNAPNSLALTQAMEHTANTYSEIGDLCQEQPKYDTLQVLELMREYSGLLSTFPELVSVHKGAFSXXXXXXXXXXXXXLKYAEVADISTRMDVVSSAMFAEIHHFHRERCRDFKDVMKKYLREQVRFHEEIIKKLNSSIDMY 1712
MAT+ R +YDF + N ELT+ EG+II +TN D+G GW EG G GL P YVE+L + S++ QA +N+ GS S + WG Q + G P W+ + +SS S+ D+ G R N+ + S ++K +N+F F K G E +LL + +++ I G G MW + F + +P K SK G+KSYI YQ+ P++T+ SV HR+KHFDWL+ERL KF I +P LPDKQ+TGR+ E+ +K R L+ W+ R+ RHPV++ES VFQ F+N + EKEWK GKRKAE+D++ G F T+ + +L ++E + + F K MD+ K+++ +G+ +W + + KEY+ + +S+A+ F + L A+ TY EI L EQPK D ++E EY G L FP+++ HKGA K KE K+ K+ + ++ R+ ++S A+ AE++HFH R D+ V++ YL +QV+F+E I +KL ++ +
Sbjct: 1 MATKARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNIKGERGLVPTDYVEILPSDGKDQFSCGNSVADQAFLDSLSASTAQASSSAASNNHQVGSGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWDTAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYFKDSESADA-GGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQYLLAKQ---LAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNF---RDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRF 592 The following BLAST results are available for this feature:
BLAST of TCONS_00064991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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