TCONS_00064985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064985
Unique NameTCONS_00064985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064985 ID=TCONS_00064985|Name=TCONS_00064985|organism=Clytia hemisphaerica|type=transcript|length=850bp
CTCGTTTTGGCGAGAAAGCTCAACCCATTTTAGAATAAGATAAAACTCTG
AATTAAGAATTGAAAGTATTATTTTTAACTGAAGATTAccaaaaaatgat
taaaaatccAACACAAAAAATATAGAATATAGTaacttatttacaaaaat
ttaccaaataataataatttatgaATTTGTCATTGAATATAAAAACAACA
GAATAATAATTTATAACTATATTCTGATTATTTACAACCGGTATAAAATA
CGTCTTTAAAAGACACTCTTCttgagaacaattttataagaacaggtGGG
CtctaaaactctaaaaaaaaGGAGCCCGGGGGCTAGGTTTGTCCGAgcta
aagttcgaaaatcgaccctttgagagactgaatttccAGACGTTTTTGGC
ACCCTTAGAGGGACTATTTCAGCCAAAAtgttcaaattttagtccaaatt
ttaagaatttatgaGCCTTTGAGTGAGTTGATTTTTGactttcgtaattt
tggaacccttacagagactcaatttctttttaatggtttttgttaCGCTA
ATTAGGGGatcaaaatagaaataataTGACATAAAACTTACCTCGTTTGc
ccagaaaataaaaacagaattAGAGCAATTTTAGAACCAAAGTTTTCTGG
AAAATTGAGAACAACCTCAACAAAAACATACCGGACGttatgaaaaaagt
gaaatcttttttaaagaagtcaAATTAAACgaataaggcgagaccaattt
gattagttgttttacgggcccgaccaaCCCTGTAATTCTAAaagtcgaaa
taaaaataaaattgattttggtagtatatttttatcttcattgctttaca
Run BLAST on NCBI

transcript from alignment at scaffold_427:421495..422344

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064985 ID=TCONS_00064985|Name=TCONS_00064985|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_427:421495..422344 (Clytia hemisphaerica)
tgtaaagcaatgaagataaaaatatactaccaaaatcaattttattttta
tttcgacttTTAGAATTACAGGGttggtcgggcccgtaaaacaactaatc
aaattggtctcgccttattcGTTTAATTtgacttctttaaaaaagatttc
acttttttcataaCGTCCGGTATGTTTTTGTTGAGGTTGTTCTCAATTTT
CCAGAAAACTTTGGTTCTAAAATTGCTCTaattctgtttttattttctgg
gCAAACGAGGTAAGTTTTATGTCAtattatttctattttgatCCCCTAAT
TAGCGtaacaaaaaccattaaaaagaaattgagtctctgtaagggttcca
aaattacgaaagtCAAAAATCAACTCACTCAAAGGCtcataaattcttaa
aatttggactaaaatttgaacaTTTTGGCTGAAATAGTCCCTCTAAGGGT
GCCAAAAACGTCTggaaattcagtctctcaaagggtcgattttcgaactt
tagcTCGGACAAACCTAGCCCCCGGGCTCCttttttttagagttttagaG
CCCacctgttcttataaaattgttctcaaGAAGAGTGTCTTTTAAAGACG
TATTTTATACCGGTTGTAAATAATCAGAATATAGTTATAAATTATTATTC
TGTTGTTTTTATATTCAATGACAAATtcataaattattattatttggtaa
atttttgtaaataagttACTATATTCTATATTTTTTGTGTTggattttta
atcattttttggTAATCTTCAGTTAAAAATAATACTTTCAATTCTTAATT
CAGAGTTTTATCTTATTCTAAAATGGGTTGAGCTTTCTCGCCAAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040747XLOC_040747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064985-exon-scaffold_427-1491911889:421495..422344TCONS_00064985-exon-scaffold_427-1491911889:421495..422344Clytia hemisphaericaexon
TCONS_00064985-exon-scaffold_427-1510915933:421495..422344TCONS_00064985-exon-scaffold_427-1510915933:421495..422344Clytia hemisphaericaexon
TCONS_00064985-exon-scaffold_427-1575043694:421495..422344TCONS_00064985-exon-scaffold_427-1575043694:421495..422344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:421495..422344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12185	1.03894	0.694807	0.576509	3.25299	2.91288	4.58328	6.78178	6.92562	3.88699	7.4429	3.78369	5.0302	7.01337	3.3891	3.39273	1.5151	1.59389	2.85075	5.00488	4.82399	6.48596	6.2699	5.79884	33.925	25.6085	6.53237	6.86806	8.57084	8.90531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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