TCONS_00064984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064984
Unique NameTCONS_00064984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064984 ID=TCONS_00064984|Name=TCONS_00064984|organism=Clytia hemisphaerica|type=transcript|length=378bp
ATTCTTGATTTACATCAATGACATGCCATCATACGTTAAATCTAACATTC
GCCTATTTGCAGATGACGCTTACTTGTATCGCATAATTGATAGTATTGGT
GACCCAATCACACTTCAAGATGACCTCACAGCACTTCAGCAATGGGAGAC
ACTATGGGATATGGAATTtcatcctcaaaagtgcaaacaTCTCCCAATTA
CAAATAAAACCAAACCCATAGAAAGCACATATTCTATCCATCAAACAGAG
CTTGAGAAAGTATCTAACGCCAAATACCTTGGAGTAACCCTGAACAATAA
GCTCAAGTGGAACACTCATATTGACACAATATGCAAAAAGGCAAATCAAA
AGAGATCTTTTCTTCAAAGGAACCTGAG
Run BLAST on NCBI

protein sequence of TCONS_00064984-protein

>TCONS_00064984-protein ID=TCONS_00064984-protein|Name=TCONS_00064984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
FLIYINDMPSYVKSNIRLFADDAYLYRIIDSIGDPITLQDDLTALQQWET
LWDMEFHPQKCKHLPITNKTKPIESTYSIHQTELEKVSNAKYLGVTLNNK
LKWNTHIDTICKKANQKRSFLQRNL
Run BLAST on NCBI

transcript from alignment at scaffold_427:367535..367912

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064984 ID=TCONS_00064984|Name=TCONS_00064984|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_427:367535..367912 (Clytia hemisphaerica)
CTCAGGTTCCTTTGAAGAAAAGATCTCTTTTGATTTGCCTTTTTGCATAT
TGTGTCAATATGAGTGTTCCACTTGAGCTTATTGTTCAGGGTTACTCCAA
GGTATTTGGCGTTAGATACTTTCTCAAGCTCTGTTTGATGGATAGAATAT
GTGCTTTCTATGGGTTTGGTTTTATTTGTAATTGGGAGAtgtttgcactt
ttgaggatgaAATTCCATATCCCATAGTGTCTCCCATTGCTGAAGTGCTG
TGAGGTCATCTTGAAGTGTGATTGGGTCACCAATACTATCAATTATGCGA
TACAAGTAAGCGTCATCTGCAAATAGGCGAATGTTAGATTTAACGTATGA
TGGCATGTCATTGATGTAAATCAAGAAT

Coding sequence (CDS) from alignment at scaffold_427:367535..367912

>TCONS_00064984 ID=TCONS_00064984|Name=TCONS_00064984|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_427:367535..367912 (Clytia hemisphaerica)
CAGGTTCCTTTGAAGAAAAGATCTCTTTTGATTTGCCTTTTTGCATATTG
TGTCAATATGAGTGTTCCACTTGAGCTTATTGTTCAGGGTTACTCCAAGG
TATTTGGCGTTAGATACTTTCTCAAGCTCTGTTTGATGGATAGAATATGT
GCTTTCTATGGGTTTGGTTTTATTTGTAATTGGGAGAtgtttgcactttt
gaggatgaAATTCCATATCCCATAGTGTCTCCCATTGCTGAAGTGCTGTG
AGGTCATCTTGAAGTGTGATTGGGTCACCAATACTATCAATTATGCGATA
CAAGTAAGCGTCATCTGCAAATAGGCGAATGTTAGATTTAACGTATGATG
GCATGTCATTGATGTAAATCAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040746XLOC_040746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064984-proteinTCONS_00064984-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064984-exon-scaffold_427-1491911889:367535..367912TCONS_00064984-exon-scaffold_427-1491911889:367535..367912Clytia hemisphaericaexon
TCONS_00064984-exon-scaffold_427-1510915933:367535..367912TCONS_00064984-exon-scaffold_427-1510915933:367535..367912Clytia hemisphaericaexon
TCONS_00064984-exon-scaffold_427-1575043694:367535..367912TCONS_00064984-exon-scaffold_427-1575043694:367535..367912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:367535..367912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06931	0.614137	1.05979	0.542306	2.76275	3.05631	1.45995	1.69911	1.32215	1.41965	0	0.352296	1.11911	1.55028	1.07129	0.606864	0.630367	0.807632	0.446315	0.700555	2.30696	1.98994	0.240699	0.65649	0.308467	0.475504	0.736566	0.307204	0.339113	0.71218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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