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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064981 ID=TCONS_00064981|Name=TCONS_00064981|organism=Clytia hemisphaerica|type=transcript|length=1224bp
agattttctatccccattggcattttgatagaaattttcatccccactga
gggaaaaagttctactggggccctgagacaggggtgttttaagcCAAACA
TCCAGGGGCTGTTGAACTCAAAAAATGGATGTTACTTTTCAAAGTGCCAT
TAAGAACCAACAACTTTTATGAGAATTTGTGGATAGTTTTACAGGATCTC
TGATAAACAcatcatttaaaattttaagaagttAAAGTTTTAAGTGCAGT
TTATTGTAGACGAGTTACTTTACTTCTCGACATACATAGAAAAACCAATA
CCCCTCGGTTGCTAAGtatttgtgtgtgtgtgttgaTACTTTTCCCTATG
TCTCCTAGGAGATATGAAAAACAGATGCAGTTAAAATTAATTTGGTTCTT
ATTTCCAAAGTGCCGTTAATGGTAGAcgagttatttcaatttttcaacgt
ACATAGAAAAGCCAATACCCCTCTTTTGTGAAGCCTTGGTCGATATCATT
ATCATCACATTCCATTTCGGGATTATGTACATGGACATGTGATTTCAAGG
CGACAAAAATGAAATGATCCCAATAATTTGGTCGGTTGTACATTTTGTAA
TCATTACAATTCAAAGATTGCATCCATGAATTATCATCCTGAAGAAATCG
AACATGTGGGCACATCAATCCTTCATTCATGGATGTTTTGGCGGCAAACT
TGTTGATTGCGTCCTCCCCATAGATGACTATATCCAGAGTTCTTTGATGC
CATGATTTGAAACAACGTGCCCGTATCTCACGGTATCTGCCAACACCAAG
AAGGTTCCGTAATAGTTCCGGTTCAAGCATAAGGTTTCCGGATGAGGCCT
TATGCAGCTGTTTGATGGTTGCTGGGGAACGAATATGGTCATTGTAAAGC
GATTGAAATGAGTTTTCATCATCAACTGTTATGTTTCCAACAACTAACCA
TCCTCCTGAATTTTAAATAGTTTAAAGTAATGAAGATGTACGCTGGCCCA
TTATTATCATTAGTAAATTGCGAATTCATTTACAAATTTTCGTatcaatt
tttcttatttttacaatGATACTCCTAGGTCACCATAGACATGTACGTAG
ATCTGCTGGGAACCCTGTTTGCACCTCTTTATCGTATACAGGCGTTGTTT
CTAAAACAATGCACAAATTAGATTGAGAATTAACTCTTTGAGAAAACCGC
CAGAAATGCTATATGATTTAAAAT Run BLAST on NCBI protein sequence of TCONS_00064981-protein >TCONS_00064981-protein ID=TCONS_00064981-protein|Name=TCONS_00064981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MLEPELLRNLLGVGRYREIRARCFKSWHQRTLDIVIYGEDAINKFAAKTS
MNEGLMCPHVRFLQDDNSWMQSLNCNDYKMYNRPNYWDHFIFVALKSHVH
VHNPEMECDDNDIDQGFTKEGYWLFYVR Run BLAST on NCBI transcript from alignment at scaffold_427:275311..276534 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064981 ID=TCONS_00064981|Name=TCONS_00064981|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at scaffold_427:275311..276534 (Clytia hemisphaerica)
ATTTTAAATCATATAGCATTTCTGGCGGTTTTCTCAAAGAGTTAATTCTC
AATCTAATTTGTGCATTGTTTTAGAAACAACGCCTGTATACGATAAAGAG
GTGCAAACAGGGTTCCCAGCAGATCTACGTACATGTCTATGGTGACCTAG
GAGTATCattgtaaaaataagaaaaattgatACGAAAATTTGTAAATGAA
TTCGCAATTTACTAATGATAATAATGGGCCAGCGTACATCTTCATTACTT
TAAACTATTTAAAATTCAGGAGGATGGTTAGTTGTTGGAAACATAACAGT
TGATGATGAAAACTCATTTCAATCGCTTTACAATGACCATATTCGTTCCC
CAGCAACCATCAAACAGCTGCATAAGGCCTCATCCGGAAACCTTATGCTT
GAACCGGAACTATTACGGAACCTTCTTGGTGTTGGCAGATACCGTGAGAT
ACGGGCACGTTGTTTCAAATCATGGCATCAAAGAACTCTGGATATAGTCA
TCTATGGGGAGGACGCAATCAACAAGTTTGCCGCCAAAACATCCATGAAT
GAAGGATTGATGTGCCCACATGTTCGATTTCTTCAGGATGATAATTCATG
GATGCAATCTTTGAATTGTAATGATTACAAAATGTACAACCGACCAAATT
ATTGGGATCATTTCATTTTTGTCGCCTTGAAATCACATGTCCATGTACAT
AATCCCGAAATGGAATGTGATGATAATGATATCGACCAAGGCTTCACAAA
AGAGGGGTATTGGCTTTTCTATGTacgttgaaaaattgaaataactcgTC
TACCATTAACGGCACTTTGGAAATAAGAACCAAATTAATTTTAACTGCAT
CTGTTTTTCATATCTCCTAGGAGACATAGGGAAAAGTAtcaacacacaca
cacaaataCTTAGCAACCGAGGGGTATTGGTTTTTCTATGTATGTCGAGA
AGTAAAGTAACTCGTCTACAATAAACTGCACTTAAAACTTTaacttctta
aaattttaaatgatgTGTTTATCAGAGATCCTGTAAAACTATCCACAAAT
TCTCATAAAAGTTGTTGGTTCTTAATGGCACTTTGAAAAGTAACATCCAT
TTTTTGAGTTCAACAGCCCCTGGATGTTTGgcttaaaacacccctgtctc
agggccccagtagaactttttccctcagtggggatgaaaatttctatcaa
aatgccaatggggatagaaaatct Coding sequence (CDS) from alignment at scaffold_427:275311..276534 >TCONS_00064981 ID=TCONS_00064981|Name=TCONS_00064981|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_427:275311..276534 (Clytia hemisphaerica)
ATGCTTGAACCGGAACTATTACGGAACCTTCTTGGTGTTGGCAGATACCG
TGAGATACGGGCACGTTGTTTCAAATCATGGCATCAAAGAACTCTGGATA
TAGTCATCTATGGGGAGGACGCAATCAACAAGTTTGCCGCCAAAACATCC
ATGAATGAAGGATTGATGTGCCCACATGTTCGATTTCTTCAGGATGATAA
TTCATGGATGCAATCTTTGAATTGTAATGATTACAAAATGTACAACCGAC
CAAATTATTGGGATCATTTCATTTTTGTCGCCTTGAAATCACATGTCCAT
GTACATAATCCCGAAATGGAATGTGATGATAATGATATCGACCAAGGCTT
CACAAAAGAGGGGTATTGGCTTTTCTATGTacgttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064981-exon-scaffold_427-1491911889:275311..276534 | TCONS_00064981-exon-scaffold_427-1491911889:275311..276534 | Clytia hemisphaerica | exon |
| TCONS_00064981-exon-scaffold_427-1510915933:275311..276534 | TCONS_00064981-exon-scaffold_427-1510915933:275311..276534 | Clytia hemisphaerica | exon |
| TCONS_00064981-exon-scaffold_427-1575043694:275311..276534 | TCONS_00064981-exon-scaffold_427-1575043694:275311..276534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_427 | supercontig | scaffold_427:275311..276534 . |
Blast
The following BLAST results are available for this feature:
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