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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064957 ID=TCONS_00064957|Name=TCONS_00064957|organism=Clytia hemisphaerica|type=transcript|length=3253bpRun BLAST on NCBI transcript from alignment at scaffold_427:143721..183342- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064957 ID=TCONS_00064957|Name=TCONS_00064957|organism=Clytia hemisphaerica|type=transcript|length=39622bp|location=Sequence derived from alignment at scaffold_427:143721..183342- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064957 vs. Swiss-Prot (Human)
Match: UB2D1 (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 3.659e-79 Identity = 116/148 (78.38%), Postives = 137/148 (92.57%), Query Frame = 2
Query: 164 MAVKRIQKEYQDIQVDPPAQCSAGPVSENDLFHWQATIMGPPDTAYQGGIFFLTINFPTDYPFKPPKVSFNTRIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICALMTDPNPEDPLVPDIARIYKTDKKKYNETCKDWTRRFAM 607
MA+KRIQKE D+Q DPPA CSAGPV + DLFHWQATIMGPPD+AYQGG+FFLT++FPTDYPFKPPK++F T+IYHPNINSNGSICLDILRSQWSPALTVSKVLLSIC+L+ DPNP+DPLVPDIA+IYK+DK+KYN ++WT+++AM
Sbjct: 1 MALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147 The following BLAST results are available for this feature:
BLAST of TCONS_00064957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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