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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064944 ID=TCONS_00064944|Name=TCONS_00064944|organism=Clytia hemisphaerica|type=transcript|length=4749bpRun BLAST on NCBI protein sequence of TCONS_00064944-protein >TCONS_00064944-protein ID=TCONS_00064944-protein|Name=TCONS_00064944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1341bp QSYDFQKKQKNLELNVQLNDYFGNNTTFKNISKMIKRPSALDDDEDLIRMRun BLAST on NCBI transcript from alignment at scaffold_427:433329..474894+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064944 ID=TCONS_00064944|Name=TCONS_00064944|organism=Clytia hemisphaerica|type=transcript|length=41566bp|location=Sequence derived from alignment at scaffold_427:433329..474894+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:433329..474894+ >TCONS_00064944 ID=TCONS_00064944|Name=TCONS_00064944|organism=Clytia hemisphaerica|type=CDS|length=108702bp|location=Sequence derived from alignment at scaffold_427:433329..474894+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064944 vs. Swiss-Prot (Human)
Match: RPAP1 (RNA polymerase II-associated protein 1 OS=Homo sapiens GN=RPAP1 PE=1 SV=3) HSP 1 Score: 399.823 bits (1026), Expect = 1.971e-115 Identity = 375/1436 (26.11%), Postives = 641/1436 (44.64%), Query Frame = 1
Query: 100 MIKRPSALDDDEDLIRMQNEYIKSKQKPAASVVRLSSQ--------------QKDIVTLKDDTSEDQNVNANQKPQKRRER----LSDLTQAAERLDQKDQEQHFTSVLKRIVERPIADNVMLNLQQFKG-GFPSVPIIKADXXXXXXXXXXXSLFAQQFNK---LDKKKDLGQENIPNQPKDQTADSQNVTKDEELPLDSLDEAASMNIVSCGDSIKTG--------------IDEENRSKLCSMSXXXXXXXXXXXXSTLDPKLVAFLKNRSAKRIEKTEQKKPNKSSLSTPKAVLIQVDETQANDADITQKKTGNKDNPDPLNPFAEFDI--QKDYVNMKDIEKDKLEWMKKVPKI--ELNQESITPRFDFEGNLLSPDQDTPTHLGLHHHGNDPGLPGYSLEELFQMIRSNFLQHRNIGLQTLSKIIEKYHKGTYIDNLSTDLLEICLNAGLVFILRWSLDEQTEQIYSASLAALANVLFIERDQEAIEK-ISYSEDGFRLPSL--------------CTYYKKRKXXXXXXXXXXNRDPTDAELMERDIVKALIQMRILPRLRYLLDESPLSPVAFKHCLHILQRISQHNIETAYEIYKCPGMIHILMRALLE------NKDGQDSIYR--------LFRFLFIAGKNMAHNTIS------KQPTLLENMTAKFTIHSFGQNDKLFEEICKLWAVLLSYDLASNAVNDLYTVLLRHLQHASANYTD-----------------------CKDTTVASLVVLVKHMIVSGQHKRVDWNLVEGVFTLVQFSLQKMLTDVKK--IGKITHPMYLSVLICCCTQYFASKNGMVNIIEPVAYLNDVGKFWSEHINDFIYSDFMKKLFLDASAHSDFKNSPKKDEYRTVKDLVNLPTYGS-RCFLSQPSLPSLSKDSPVLILQALMGMLNELTSINKQLLTKVKAFVLSPNMTAMCSNFLEYNNYKRSSELASTRIELLTLWHSLQIYQRVVSFCGMGSTNQQCNDIYLQTGYRL--VSLLQPGDEQLAVTIMRTIAFNPKILQTKLYVIRVSESCSTETTQKIENQLKSGHEFLQRTGSMYEANLFPNA--------NDLLNNEKPSFDSLLTASRANK-----------------ILPSDWMFFPIVQLYNESLSLEFSGKVISRASSDAFRXXXXXXXXXXXXEVTRPALLADVSETLRLTRLMCVFLTEGDLYSEETVRDLLTSLLAVYSSNAFLSYLNLEEKIPGITSFYDIYKSLIEQYLSASYGDSLFANVLLFPTQLCHDVKYRRTLWTEHSSILRVFPTPLNKVMLNIKSFLASESENMEMIRLYYRTFIAKRLSKNWCPLFYVIAIHHLVQFIFNAQISDETPKDEAEEILKERQSMLNGILTLQDTELRDDVIYYKFYDIHSKQSCIERFTQLPPSREKFLRDLKS 4023
M+ RP + + DL+ Q++++ + PA +V+ ++ +D+V L D+ + P++ R L + ERL + DQ H T+VL +I+ER +V +NL G FP+V + D KS T K+S+FAQ+ + K E +PN + A VT + P + + + G ++ TG I EEN ++L +M+ EEIL+EQ++LL+ LDP LVAFL++ S + E+T + + P A + + + + A +K+ D +P P + QK++++M +E +KL W + +P + + QE + RF +G LL+PD D PTHLGLHHHG + GYSL+ELF + RS Q R + L L+++I + G + D L+ +L + L+AG +F+LR+SLD++ + + + ++ AL +L D+E ++ S+ P + C K +++ +E +R P D L D++K L+ +LPRLRY+L+ + P L +L R+++H++E+A + +CP +I ++R L S+Y+ L R L AG+N+A +S + ++ + + + + L E +LWAV SY +LY VL+R LQ + +T A + +S V W V G+ LV+ L++ L + + + + P+ ++ L+ Y A + P +L D+ + E + + + L+ D+ H +P V L P+ S C P L SP L AL+ +LN L I+K L ++ A + +P + + FL+ + L L + LQ ++ L G L +S L PG E L ++ + F + L + + +QL G + R G + L A N L + P+ SLL + ++ +LP+DW F P+++LY+ + S + +D LQ++L+LE RP L V RL RLMCVFL + +L+ E V+ L+ +LLA L LNL+ ++PG+TSF D+Y + ++ + + S+GD LF ++L P Q V R L+ EH LR PL ++ ++++ + +N+ +++LY+RT + L WCP+ Y +A+ H+ FIF+ + P+ ++E+ R+SML L D LR +++YK + + E ++QLPP R+ +L+ L S
Sbjct: 1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVML-DNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQ--HITAVLTKIIER-DTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGA----VTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQ-EQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKR----DKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEE----SRPPPD--LARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQELALPP-EEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSC--PEDWLQDMQRLSEELLLPLLSQPTLGSLW-DSLRHCSLLCNP----LSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQ---NYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPER--------TSGGPEAADFSDQLSLGSSRVPRCG---QGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRA-----SDTPSGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFS-----QDPQS-SDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEG-FELYSQLPPLRQHYLQRLTS 1383 The following BLAST results are available for this feature:
BLAST of TCONS_00064944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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