|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064916 ID=TCONS_00064916|Name=TCONS_00064916|organism=Clytia hemisphaerica|type=transcript|length=4746bpRun BLAST on NCBI protein sequence of TCONS_00064916-protein >TCONS_00064916-protein ID=TCONS_00064916-protein|Name=TCONS_00064916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp LQFHFSEKKGKSEKGKGEEERRESMSRRSHGTFDDQDSPVSSRATSTSGPRun BLAST on NCBI transcript from alignment at scaffold_427:218324..249368+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064916 ID=TCONS_00064916|Name=TCONS_00064916|organism=Clytia hemisphaerica|type=transcript|length=31045bp|location=Sequence derived from alignment at scaffold_427:218324..249368+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:218324..249368+ >TCONS_00064916 ID=TCONS_00064916|Name=TCONS_00064916|organism=Clytia hemisphaerica|type=CDS|length=25245bp|location=Sequence derived from alignment at scaffold_427:218324..249368+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064916 vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2) HSP 1 Score: 412.535 bits (1059), Expect = 2.711e-127 Identity = 234/510 (45.88%), Postives = 320/510 (62.75%), Query Frame = 1
Query: 2593 ENKLVIAIVIGAVLGTIIGISINSPIQRLPQPDRYTAILVIGFPGELLLRALKMLILPLITFSLIVGLSNLNQNVSGKIGARAVTYYLSTTVLAAILGIILVSAIRPGIGMDPPESS-----KKTELVRPLDSFFDILRNMFPSNIVKAAVQQDKTIIVVKKELSNPTNKTFDFNTMTTNETAAILKKYTIHKTIDPNTGDVINYTTIYDINNYTIGEGLKHPGKANFLGLIIFAIVVGKIAGGMGNRAKPFVEFVTVFNEIITQIVIYVMWCAPFGILSLIAAQFAQMEDIASTFESLALFMVTVSLGVFAHGFIVLPFIFWLFTRTNPFRYIQGLTEALFTAFGTDSSAATLPITMRCLEENLHLDRRITRFILPVGATINMDGTALYEAVSAIFIAQSVGASLSFGDYVAISFTSILASVGAAAIPHAGLVTMLIVLDTVGLPTEMVGIIFTVDWLLDRFRTVVNVLGDAFGTGIVQHLSQTDLKKSEEENTAKIDQIQTDNESRID 4107
+N L+ V G +LG + G + RL P +++I FPG++L+R LKMLILPLI SLI GLS L+ SG++G RA+ YY+STT++AA+LG+ILV AI PG +P KK + V LD+F D++RN+FP N+V+A QQ +T V KK L P N T+A++ +++T+ T + + I +GL+ N LGLI F I G G MG++AK V+F + NEI+ ++VI +MW +P GI LI + ++D+ L ++MVTV +G+ HG I LP I+++ TR NPF + G+ +A TA GT SSA TLP+T RCLEENL +D+R+TRF+LPVGATINMDGTALYEAV+AIFIAQ G L G V +S T+ LASVGAA+IP AGLVTML++L VGLPTE + ++ VDWLLDR RT VNV+GD+FG GIV HLS+++L + ++ D T +S D
Sbjct: 43 KNLLLTLTVFGVILGAVCG-----GLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPG---NPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQT--VTKKVLVAPPPDE------EANATSAVVS--LLNETV----------TEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEMTKTQSIYD 524 The following BLAST results are available for this feature:
BLAST of TCONS_00064916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.