TCONS_00064916-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064916-protein
Unique Name	TCONS_00064916-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	764

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064916-protein ID=TCONS_00064916-protein|Name=TCONS_00064916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
LQFHFSEKKGKSEKGKGEEERRESMSRRSHGTFDDQDSPVSSRATSTSGP
PPSYEEFQRHRSVRSTNDKSQLILDDETNTYTKQNKHNASVRSNSSSNSQ
PLKISGLSYAFSSNTLPNSAATNTTIVNEEVISNGVEPLYPLGNDRYQSN
VDDTQVRIEKLDEGRDAWGNKIEFILASIGLAVGLGNVWRFPYLCQKNGG
GAFLIPYFIMMVIEGIPLFYIEFAIGQRFRRSAPGAWARIHPALKGIGIS
CIIISILMCIYYVCVIAWSFLYLFVSMTDKLPWTIENCPRYSEYKPLADQ
CAANSSMCDAKNNFNECCMKDPQLYYFYRKALDVSVDITDSGSGFNGKLF
GCLILSWVVVYACIVKGVKSSGKAVYFTATFPYLILIILFFVGVTLDGAD
IGLKKLFTPKWEKLKDPGIWMDAAAQMFFTLSLGFGALISFASYMPLRNN
CVRDAYTVVLINCGTSLFAGIVVFSILGHREKVTGNPVDKVGGGPGLAFI
TFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDMNWIKM
KKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVSLGLLFIAFFQVV
AVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKYISPIAILIIFIANIVKS
SSGVAKYKVYVGCAEQYTNFTSLAPGNNEQIAEVAYPGWAQFIIVIFITI
TMVPIIIYMVIDLVRNPSKWKEGFKNKLTNVVDLHPDPVRMDPSRRRTPQ
EMEMVIMKEDAANP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040721	XLOC_040721	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064916	TCONS_00064916	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 628..648 score: 32.08 coord: 509..528 score: 60.33 coord: 374..391 score: 57.83 coord: 588..608 score: 40.98 coord: 246..272 score: 36.25 coord: 202..221 score: 55.74 coord: 173..194 score: 69.08 coord: 456..476 score: 45.9
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 165..715 e-value: 6.9E-178 score: 592.5
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 189..203
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 164..718 score: 90.399
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 165..714

Blast

[Close]

BLAST of TCONS_00064916-protein vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 414.461 bits (1064), Expect = 7.878e-136
Identity = 219/533 (41.09%), Postives = 325/533 (60.98%), Query Frame = 0

Query:  121 ATNTTIVNEEVISNGVEPLYPLGNDRYQSNVDDTQVRIEKLDEGRDAWGNKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGIPLFYIEFAIGQRFRRSAPGAWARIHPALKGIGISCIIISILMCIYYVCVIAWSFLYLFVSMTDKLPWTIENCPRYSEYKPLADQCAANSSMCDAKNNFNECCMKDPQLYYFYRKALDVSVDITDSGSGFNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYLILIILFFVGVTLDGADIGLKKLFTPKWEKLKDPGIWMDAAAQMFFTLSLGFGALISFASYMPLRNNCVRDAYTVVLINCGTSLFAGIVVFSILGHREKVTGNPV-DKVGGGPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKYISPIAILIIFIANIVK 649
            ATN + V +  IS  V    P+ ND+ ++ V   Q +   L + RD W  + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++  G+PLF +E ++GQ       G W ++ P  KG+G++  ++S  + IYY+ +I+W+  YL+ S T  LPW   + P  +      D+C +N SM +  N           +  F+ + +    D  D        L   L ++W++VY CI KGV  +GK VYF+AT+PY++LIILFF GVTL GA  G+    TP + KL D  +W+DAA Q+FF+  LG G+LI+  SY    NN  RD+  V  IN  TS+FAG V+FSI+G    VT   + D    GPGLAF+ + +A  Q+P+SPLW+ LFF ML++LGIDS+F T+EG I    D     ++ ++E F A   I+  LIG+  +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW + +PI +  +FI + V+
Sbjct:    2 ATNGSKVADGQISTEVSEA-PVANDKPKTLVVKVQKKAADLPD-RDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNT------DRCFSNYSMVNTTN-------MTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQ 518

The following BLAST results are available for this feature:

BLAST of TCONS_00064916-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064916-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC6A1	7.878e-136	41.09	Sodium- and chloride-dependent GABA transporter 1 ...	[more]

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TCONS_00064916-protein (polypeptide) - C. hemisphaerica