TCONS_00064908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064908
Unique NameTCONS_00064908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064908 ID=TCONS_00064908|Name=TCONS_00064908|organism=Clytia hemisphaerica|type=transcript|length=397bp
AAACTCTTACGATTTCGATTTTTAACTTCATCTAAAAACACATCATCTGG
GCAGCTTGGGTATTGATAATTTTCATCAAGTTCAGTGGCCTTGTCAAGAA
GAACTAAATCAGGATTCGTGTATGAGTGTGTGCTTTTTGCTGTGTTCACT
TTTGAAGGGCTTTTCAGATTGTTTTTACAGTTAAAACATACCTCGATTGC
TTTCGTTTCAACACTATCAAGTTCCCTAACAAAAGTATTTGACACGAACC
CTTCCCTCCCACTTTCATCAACTGCGAGCCACCAGCCGTGGATAGAATCG
CTAACAGGTTTATCGATAATTTTTAACACGTCTCCACGATCAAATGAAAG
CTCGTTCGGTTTTTCATTAGAATACGAATATAGAGTTCGAGCATAAC
Run BLAST on NCBI

protein sequence of TCONS_00064908-protein

>TCONS_00064908-protein ID=TCONS_00064908-protein|Name=TCONS_00064908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
YARTLYSYSNEKPNELSFDRGDVLKIIDKPVSDSIHGWWLAVDESGREGF
VSNTFVRELDSVETKAIEVCFNCKNNLKSPSKVNTAKSTHSYTNPDLVLL
DKATELDENYQYPSCPDDVFLDEVKNRNRKS
Run BLAST on NCBI

transcript from alignment at scaffold_425:424238..424634

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064908 ID=TCONS_00064908|Name=TCONS_00064908|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_425:424238..424634 (Clytia hemisphaerica)
GTTATGCTCGAACTCTATATTCGTATTCTAATGAAAAACCGAACGAGCTT
TCATTTGATCGTGGAGACGTGTTAAAAATTATCGATAAACCTGTTAGCGA
TTCTATCCACGGCTGGTGGCTCGCAGTTGATGAAAGTGGGAGGGAAGGGT
TCGTGTCAAATACTTTTGTTAGGGAACTTGATAGTGTTGAAACGAAAGCA
ATCGAGGTATGTTTTAACTGTAAAAACAATCTGAAAAGCCCTTCAAAAGT
GAACACAGCAAAAAGCACACACTCATACACGAATCCTGATTTAGTTCTTC
TTGACAAGGCCACTGAACTTGATGAAAATTATCAATACCCAAGCTGCCCA
GATGATGTGTTTTTAGATGAAGTTAAAAATCGAAATCGTAAGAGTTT

Coding sequence (CDS) from alignment at scaffold_425:424238..424634

>TCONS_00064908 ID=TCONS_00064908|Name=TCONS_00064908|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_425:424238..424634 (Clytia hemisphaerica)
TATGCTCGAACTCTATATTCGTATTCTAATGAAAAACCGAACGAGCTTTC
ATTTGATCGTGGAGACGTGTTAAAAATTATCGATAAACCTGTTAGCGATT
CTATCCACGGCTGGTGGCTCGCAGTTGATGAAAGTGGGAGGGAAGGGTTC
GTGTCAAATACTTTTGTTAGGGAACTTGATAGTGTTGAAACGAAAGCAAT
CGAGGTATGTTTTAACTGTAAAAACAATCTGAAAAGCCCTTCAAAAGTGA
ACACAGCAAAAAGCACACACTCATACACGAATCCTGATTTAGTTCTTCTT
GACAAGGCCACTGAACTTGATGAAAATTATCAATACCCAAGCTGCCCAGA
TGATGTGTTTTTAGATGAAGTTAAAAATCGAAATCGTAAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040713XLOC_040713Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064908-proteinTCONS_00064908-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064908-exon-scaffold_425-1491911889:424238..424634TCONS_00064908-exon-scaffold_425-1491911889:424238..424634Clytia hemisphaericaexon
TCONS_00064908-exon-scaffold_425-1510915933:424238..424634TCONS_00064908-exon-scaffold_425-1510915933:424238..424634Clytia hemisphaericaexon
TCONS_00064908-exon-scaffold_425-1575043694:424238..424634TCONS_00064908-exon-scaffold_425-1575043694:424238..424634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:424238..424634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.01619	1.95509	0	0.114995	0	0	4.81451	6.08762	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR011511SH3_2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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