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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064846 ID=TCONS_00064846|Name=TCONS_00064846|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GGGgttcaacaaaatcaaacatGCATGCAGTACAAAACATTTGTGAAGTG
CTTTACGTAAATGATCAAAGATGCGTATAAAAGTTATAGGGTGTTGGGTT
GAATTTCTCTGGTGCGGGAAAAGTAGCCAAAAGCAAGTTTCTTATCAAGT
TGTTTTAATTTGCTTTGCGTGTTTATTGGCTGGTTTTAGCGTTGcgttat
ttttcaacctaaccACAATACCCGATCTAGATGGCAACTGCGGCGATGCG
TAGCTACCGGCGAATGTGGAATTAGAGCGATTAAACTGATTTCGTTTAGT
TTTGAAGTGCCTTTCGATAGGCAGAATATGCGGCGTGGTATGAAGATGTT
TCCATTCGTATCAAGTAGTGAAAAGAAATGCAAAAAAGTAGCTGATGAGC
TTACACGTGTGAATCAATATAGTCGTGGAATTGCTGAATTGGCAGCTCTG
CATTGTTTGGATACGGCAGATGCTGCTGATGGAAATTGTGGTCGATGAAA
TAGCTGAAAAAATGAAGGACGCTAACGATGGTCTTAGATTGGAAGGCAGC
GAAGACCTTGGTTACCATCTTTCTAGTTGGGATTATAGCTGCAAGCTTTC
CCAATCCAATAGTTCAACAAGCTGAGGTACAAGTTCATGTACATGAAACT
TTGtatttgaatatttctttgCAAAATCTGACAACTGGCGACACAATAgt
aatatttgaaattttggctggTAAGGAAATCATCAATAATATTGATAAGG
ATACAGGTAATCCAGAAGAACTAAAAAGGGTGTATCCTAAGCCAGATAAT
GTTTTCGGTGATCGCTTGGAAATCATATTTTCACCAGAAGAGCAACGTGT
AACTGTCATCATAAAGGATATGCAATACCAACAGGATGGAATGAAAATCG
TGTCAGTTTTAGTCAATCGACGAAAACAAGGGGGTTTCAAGACAGCTCAG
AGTGCCACCAACATATCAGTTATTAGTGAACCAAATGCAAACTCATCACC
ATTAGCAATGAACAATACGCAATATCAAATCGATGCTGGTGAAACTTTGA
ATCTGACTTTGATCATGAGTGGCAACCCTCAACCTAACGTGACATTTAAG
CTTGAAGATGAGCAGCTCAATGTTTTGGTAACAgagatttcaaaattaaa
tcgCACGTATAAGTATGAAGTACTAAG Run BLAST on NCBI protein sequence of TCONS_00064846-protein >TCONS_00064846-protein ID=TCONS_00064846-protein|Name=TCONS_00064846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MVLDWKAAKTLVTIFLVGIIAASFPNPIVQQAEVQVHVHETLYLNISLQN
LTTGDTIVIFEILAGKEIINNIDKDTGNPEELKRVYPKPDNVFGDRLEII
FSPEEQRVTVIIKDMQYQQDGMKIVSVLVNRRKQGGFKTAQSATNISVIS
EPNANSSPLAMNNTQYQIDAGETLNLTLIMSGNPQPNVTFKLEDEQLNVL
VTEISKLNRTYKYEVL Run BLAST on NCBI transcript from alignment at scaffold_425:227405..231238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064846 ID=TCONS_00064846|Name=TCONS_00064846|organism=Clytia hemisphaerica|type=transcript|length=3834bp|location=Sequence derived from alignment at scaffold_425:227405..231238+ (Clytia hemisphaerica)
GGGgttcaacaaaatcaaacatGCATGCAGTACAAAACATTTGTGAAGTG
CTTTACGTAAATGATCAAAGATGCGTATAAAAGTTATAGGGTGTTGGGTT
GAATTTCTCTGGTGCGGGAAAAGTAGCCAAAAGCAAGTTTCTTATCAAGT
TGTTTTAATTTGCTTTGCGTGTTTATTGGCTGGTTTTAGCGTTGcgttat
ttttcaacctaaccACAATACCCGATCTAGATGGCAACTGCGGCGATGCG
TAGCTACCGGCGAATGTGGAATTAGAGCGATTAAACTGATTTCGTTTAGT
TTTGAAGTGCCTTTCGATAGGCAGAATATGCGGCGTGGTATGAAGATGTT
TCCATTCGTATCAAGTAGTGAAAAGAAATGCAAAAAAGTAGCTGATGAGC
TTACACGTGTGAATCAATATAGTCGTGGAATTGCTGAATTGGCAGCTCTG
CATTGTTTGGATACGGCAGATGCTGCTGATGGAAATTGTGGTCGATGAAA
TAGCTGAAAAgtaagttgaaaaatatttcttttgtttcgcTATGTTTGAA
GATTGAGCCAATAGTCGGGTAGAAATACTGACTTAGAATTCCGACAAAGT
GCCGCTGGAGAAAAGCGGACCCTGTTAGAAACCAATATTTAGCAAAAATT
GGACCCTGTTAAACAAACGATCGATGAAATATGGAGCTTGTAAGTCGAAA
TTTGGACCTTGCCAGATgcaaattttcctaaaaaccaTCCTGACCAGCGA
CATGTCCGCGTACCCAAATCGCATGCGTGACCCCCAACCCGGGGCTAATA
GCTGCCAAAGAATGTCTAGCTTTTCCAACTTTCCAAGAATATGACAAAGT
TAATTGATTCttattttctataaattttatGTTATCTCTTCGAATGAAAA
CTTCAGAACTCATttcttttagattttcaaaaggCTAAAATAAATATGTA
TGGGGGTATTATAGCGAACGTAAtctgatttcaaaaatattagtAAGCTT
CAAGCTATGTAGACAAGCGAGATTCAAGTAATTTGAGAAAAACAATCGAT
TTTTGGTCATCATAAAATTCTATTTACTTacttatattttcaaaaaatat
catgACTTTTTAACGTTTGAAATTAGATGCTGTGAAAATGTATCAAATTT
TTGTAGAAGGACAATAGCTTTTGAGAGTAATCACTGTTGCGTGCCTAGGC
TAGTTCTCAAGTAGAATATTTTCAATGACTGGAAAAAGTCTTCATAGAAA
ATTTGGACCaagaaatgaaataaacaaaattttttaaacttaaatCGCTT
CGGAAATTTAGAAGGATTTCAACggtaattattttttatttttttagtta
aaaGTCTTTTAACGGTTTAAGAGATATGAATTAGTGAATAGTTAAAcatt
aaaatatatttcgaGTATAAGGTCTTTGATGGAAAAAAAGCTGAATAAAT
TTCCATTTTGACGGAATTTTATTCAagataaacacgtaaaaagaaaattt
gtttaatCTAAAGGACGTAGACAAACGAGGTTTTTCTGAAATAATGTAAA
TATTCCAgccctttaaaaatatttatcggTTAGTTAGTTCCTTCTTTACA
AAAACAACAGTAACTACTGTAGTATTGATACCATTAATACGTACGTATCA
TCTTtaagcataatttttttttcgtcgtcattGGGATAAAATGTCGAAGG
GAAGATTAatccttttttaaagattatcaaAGAAGAGGATGTATGattat
caaagaaaatttgaaaccGAAGTTATTTTTCATATCATACATCGTCACTT
TAGACAGTCATACTAAAACTCCAAAGAGATTCGTCTCGTCGTGAAATACC
TCATCTCACTCAATCACtaataacaaaaacaaagtgtaagatttcaaaaa
agggACACTTTCGTCATCACTCATGGGAACTTTGCGGGGcgaatcaaaac
atttgagGTATTTTGAGAGGATTCTTCAAAAATGTATGTACTATAatcta
tttttaagattttcgagTGTGTAGGGTTTGTTTTGTATCTTTTAAGCGta
tattatttcaaaattgcGATTGCAAAACTTACCAACAAAATTTAAATCAG
CTCttccaaaaaacaaaagttatgctcaatacTTCTTCCATTTCTTGCAG
AATGAAGGACGCTAACGATGGTCTTAGATTGGAAGGCAGCGAAGACCTTG
GTTACCATCTTTCTAGTTGGGATTATAGGTAAGATCTATATCTTACGATA
TACATACTTTTCAATAtgaacaattttatgagaacaGGAGGCTCCACTTT
TGGCAAAAGCTAAGAACAATTCAGAAACAATTCCAAAAAAtgattgattc
agattgattgaTGATTCAGCAATTactaaaaaatgctgatttcaaaCCCC
TTTTAAGCCAATTAGTAAAGTTAGCACAATAAGAAGTACAATGGCACCTC
TGATTAGTTGTTCACCATTTAAGAAGTTTTTAATTTCGGGCCCAAATCTC
GGAATTAaaccacaaaacaaaaacaccCGCCTCTGCAagaattttctatt
tcttataaaaaaaacaagtttccCTTTAGCTCTGTCTCcaaataaatctt
caaaatctcTTTTCAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAGC
TGAGGTACAAGTTCATGTACATGAAACTTTGtatttgaatatttctttgC
AAAATCTGACAACTGGCGACACAATAgtaatatttgaaattttggctggT
AAGGAAATCATCAATAATATTGATAAGGATACAGGTAATCCAGAAGAACT
AAAAAGGGTGTATCCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAAA
TCATATTTTCACCAGAAGAGCAACGTGTAACTGTCATCATAAAGGATATG
CAATACCAACAGGATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGACG
AAAACAAGGGGGTTTCAAGACAGCTCAGAGTGCCACCAACATATCAGTTA
TTAGTAAGAATGAATTCTTTCATTATCATttatcaaataataaagtatGA
CTACTCATTTTCGGCGGATATAAACATCTAAAAGTCTATTTCGAAAATAT
TGGCAGTCCGCACATTTTGATATGTGCTCTCGAAGGAGAAACGATATTAA
AAGtaacattttgatgaaaagatAATCTTAAACGGACAATTTTAAGACTT
GAAAATCTTTTAGCCTACTTTGAAGGGTGTggaatgtgattttttttttt
ggaccagaCTTTATCAGGATACGAGGTTAACGATTGGCTTCGGAAACCAA
GGTTCAAATCTTTAAGAGTACGGTGTTTAGGTCACATAAAGCTATATAAT
AGTTAtcagacagttgcgagtacaatacaagaaatattttgcgAGTTCCG
AGATTATTTTGCATATTATTCACAAAAaatcggaacgagtaaaatatttc
tgtATTGTACACGAGCTTGCGTCCGATAACTGGTTTATCAGTGAAccaga
aaatgcactttttgtactctttttaccaatcagattgctgatattttttg
gatcactGATAAAAGGGAGATACCATCTAGTATTTTGAAAGATTGTATTG
CATATGTATTTCTCTCTCCAATACTATTTAAGGTGAACCAAATGCAAACT
CATCACCATTAGCAATGAACAATACGCAATATCAAATCGATGCTGGTGAA
ACTTTGAATCTGACTTTGATCATGAGTGGCAACCCTCAACCTAACGTGAC
ATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTGGTAACAgagatttcaa
aattaaatcgCACGTATAAGTATGAAGTACTAAG Coding sequence (CDS) from alignment at scaffold_425:227405..231238+ >TCONS_00064846 ID=TCONS_00064846|Name=TCONS_00064846|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_425:227405..231238+ (Clytia hemisphaerica)
ATGGTCTTAGATTGGAAGGCAGCGAAGACCTTGGTTACCATCTTTCTAGT
TGGGATTATAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAGCTGAGG
TACAAGTTCATGTACATGAAACTTTGtatttgaatatttctttgCAAAAT
CTGACAACTGGCGACACAATAgtaatatttgaaattttggctggTAAGGA
AATCATCAATAATATTGATAAGGATACAGGTAATCCAGAAGAACTAAAAA
GGGTGTATCCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAAATCATA
TTTTCACCAGAAGAGCAACGTGTAACTGTCATCATAAAGGATATGCAATA
CCAACAGGATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGACGAAAAC
AAGGGGGTTTCAAGACAGCTCAGAGTGCCACCAACATATCAGTTATTAGT
GAACCAAATGCAAACTCATCACCATTAGCAATGAACAATACGCAATATCA
AATCGATGCTGGTGAAACTTTGAATCTGACTTTGATCATGAGTGGCAACC
CTCAACCTAACGTGACATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTG
GTAACAgagatttcaaaattaaatcgCACGTATAAGTATGAAGTACTAAT
GGTCTTAGATTGGAAGGCAGCGAAGACCTTGGTTACCATCTTTCTAGTTG
GGATTATAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAGCTGAGGTA
CAAGTTCATGTACATGAAACTTTGtatttgaatatttctttgCAAAATCT
GACAACTGGCGACACAATAgtaatatttgaaattttggctggTAAGGAAA
TCATCAATAATATTGATAAGGATACAGGTAATCCAGAAGAACTAAAAAGG
GTGTATCCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAAATCATATT
TTCACCAGAAGAGCAACGTGTAACTGTCATCATAAAGGATATGCAATACC
AACAGGATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGACGAAAACAA
GGGGGTTTCAAGACAGCTCAGAGTGCCACCAACATATCAGTTATTAGTGA
ACCAAATGCAAACTCATCACCATTAGCAATGAACAATACGCAATATCAAA
TCGATGCTGGTGAAACTTTGAATCTGACTTTGATCATGAGTGGCAACCCT
CAACCTAACGTGACATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTGGT
AACAgagatttcaaaattaaatcgCACGTATAAGTATGAAGTACTAATGG
TCTTAGATTGGAAGGCAGCGAAGACCTTGGTTACCATCTTTCTAGTTGGG
ATTATAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAGCTGAGGTACA
AGTTCATGTACATGAAACTTTGtatttgaatatttctttgCAAAATCTGA
CAACTGGCGACACAATAgtaatatttgaaattttggctggTAAGGAAATC
ATCAATAATATTGATAAGGATACAGGTAATCCAGAAGAACTAAAAAGGGT
GTATCCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAAATCATATTTT
CACCAGAAGAGCAACGTGTAACTGTCATCATAAAGGATATGCAATACCAA
CAGGATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGACGAAAACAAGG
GGGTTTCAAGACAGCTCAGAGTGCCACCAACATATCAGTTATTAGTGAAC
CAAATGCAAACTCATCACCATTAGCAATGAACAATACGCAATATCAAATC
GATGCTGGTGAAACTTTGAATCTGACTTTGATCATGAGTGGCAACCCTCA
ACCTAACGTGACATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTGGTAA
CAgagatttcaaaattaaatcgCACGTATAAGTATGAAGTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064846-exon-scaffold_425-1491911889:227405..227914 | TCONS_00064846-exon-scaffold_425-1491911889:227405..227914 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1510915933:227405..227914 | TCONS_00064846-exon-scaffold_425-1510915933:227405..227914 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1575043694:227405..227914 | TCONS_00064846-exon-scaffold_425-1575043694:227405..227914 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1491911889:229555..229632 | TCONS_00064846-exon-scaffold_425-1491911889:229555..229632 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1510915933:229555..229632 | TCONS_00064846-exon-scaffold_425-1510915933:229555..229632 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1575043694:229555..229632 | TCONS_00064846-exon-scaffold_425-1575043694:229555..229632 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1491911889:230021..230407 | TCONS_00064846-exon-scaffold_425-1491911889:230021..230407 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1510915933:230021..230407 | TCONS_00064846-exon-scaffold_425-1510915933:230021..230407 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1575043694:230021..230407 | TCONS_00064846-exon-scaffold_425-1575043694:230021..230407 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1491911889:231037..231238 | TCONS_00064846-exon-scaffold_425-1491911889:231037..231238 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1510915933:231037..231238 | TCONS_00064846-exon-scaffold_425-1510915933:231037..231238 | Clytia hemisphaerica | exon |
| TCONS_00064846-exon-scaffold_425-1575043694:231037..231238 | TCONS_00064846-exon-scaffold_425-1575043694:231037..231238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:227405..231238 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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