|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064844 ID=TCONS_00064844|Name=TCONS_00064844|organism=Clytia hemisphaerica|type=transcript|length=1285bp
AATCGATGAAGACAACTCGGATATTAAATCCATTACAAACTTCAGTATTG
ATAAAGACTTCGTCAATGATGACAAGAGAGACATCAATCACCGATCCGAA
AACGCATCAGAGTAACACAATATTTCCCAGTGAGGTCGCAAGTGGAATAC
TACCAGTCTTTGTAACAGAAACATCTTCGATAATCGAAGCATCTNTCAGT
GAGGTCGCAAGTGAAATACTACCAGCCTTTGTAACAGAAACATCTTCGAT
AATCGAAGCATCTTCACAATCATTCAACCAACATTCTTTGGCAGCTACTC
ATTCCATTAGTAAAAcgacaaaaataatttcaacagAGGAGTATCAACAT
TTACATCTCTCTTCGACATCCATTCAAACAAAGCTGGAAGCTTCAACAAG
AAACTTCAAAACTTCAACAAAGAATTTCGAGACTTCAACAAAGAATTTCG
AGacttcaacaaaaaatatcGAGACTTCAACAAAGAATTTCGAGacttca
acaaaaaatatcGAGACTTTAACAAAAGATTTCGAGacttcaacaaaaaa
tatcgagagtttattaaaaaatatcgagacttcaacaaaaaatatcgaga
ctttaacaaagaatttcgagacttcaacaaaaaatatcGAGATCAAATCA
ACTAAAAGTGAGTTGTTACCAGTTAAGACCACCATCGCTATGCAAAGAAA
TTGTTCGATAGAAAGTCTGGACTTCTTCATTGAGATGAAAGATGAAAACG
AAAAGAGAGAGATAGTAGAAGAAACATTACGTCACATTGTGTGCAACGAT
GCCAGGGACGAATGTAACGCTGAAATTGCAAAAGCTCATTGCGGGAATCC
TGGTCCTTCATTCATCAAAGAATATTAATTAAATGAAACAAATAAGGGCT
TCAAGGTCCAAATCAAATCGATATTTTGTGGAGACGCAAAACAATGCTTA
ATGGAGACCATATTCACCTCAAAACGTTGGACAAAATCATCAACAGTAAG
GGTCTGCACAATGTTCGGAAGATGTAACAAACAGGGAATCGATGGTGGAG
AAGTCAACAGTGCACGGCAGAATCGTTATAAAACGTTCATTATTTTAAGC
TCCGTTTTCCTTGTTTTGACACTGACTGTTGGCATTCTTTTCGCATTGAA
AAAGAGGTTAAAATTACAAATGAAAGTAGCGAGCTCTCAGCAATATGTTC
ACAACAACAATAAAGCGACACAAATCGATCGAACAACGAACGAAGTGACG
TCGAAGTTTTGAGAAAGAAATATGTCGTAAAGCTG Run BLAST on NCBI protein sequence of TCONS_00064844-protein >TCONS_00064844-protein ID=TCONS_00064844-protein|Name=TCONS_00064844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
SMKTTRILNPLQTSVLIKTSSMMTRETSITDPKTHQSNTIFPSEVASGIL
PVFVTETSSIIEASXSEVASEILPAFVTETSSIIEASSQSFNQHSLAATH
SISKTTKIISTEEYQHLHLSSTSIQTKLEASTRNFKTSTKNFETSTKNFE
TSTKNIETSTKNFETSTKNIETLTKDFETSTKNIESLLKNIETSTKNIET
LTKNFETSTKNIEIKSTKSELLPVKTTIAMQRNCSIESLDFFIEMKDENE
KREIVEETLRHIVCNDARDECNAEIAKAHCGNPGPSFIKEY Run BLAST on NCBI transcript from alignment at scaffold_425:214983..217810+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064844 ID=TCONS_00064844|Name=TCONS_00064844|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at scaffold_425:214983..217810+ (Clytia hemisphaerica)
AATCGATGAAGACAACTCGGATATTAAATCCATTACAAACTTCAGTATTG
ATAAAGACTTCGTCAATGATGACAAGAGAGACATCAATCACCGATCCGAA
AACGCATCAGAGTAACACAATATTTCCCAGTGAGGTCGCAAGTGGAATAC
TACCAGTCTTTGTAACAGAAACATCTTCGATAATCGAAGCATCTNTCAGT
GAGGTCGCAAGTGAAATACTACCAGCCTTTGTAACAGAAACATCTTCGAT
AATCGAAGCATCTTCACAATCATTCAACCAACATTCTTTGGCAGCTACTC
ATTCCATTAGTAAAAcgacaaaaataatttcaacagAGGAGTATCAACAT
TTACATCTCTCTTCGACATCCATTCAAACAAAGCTGGAAGCTTCAACAAG
AAACTTCAAAACTTCAACAAAGAATTTCGAGACTTCAACAAAGAATTTCG
AGacttcaacaaaaaatatcGAGACTTCAACAAAGAATTTCGAGacttca
acaaaaaatatcGAGACTTTAACAAAAGATTTCGAGacttcaacaaaaaa
tatcgagagtttattaaaaaatatcgagacttcaacaaaaaatatcgaga
ctttaacaaagaatttcgagacttcaacaaaaaatatcGAGATCAAATCA
ACTAAAAGTGAGTTGTTACCAGTTAAGACCACCATCGCTATGCAAAGAAA
TTGTTCGATAGAAAGTCTGGACTTCTTCATTGAGATGAAAGATGAAAACG
AAAAGGTAACGAATGAAAGAAATAGAGTTAGTGCAAAGaataaggaaaga
aattttcgaggaacaaattttcgcggaattaaattccgcgaaacaagAAT
TGCTGTTCACACAAATGTAGGAGTACCCCACTTTTCctcctggatttctc
cactggCCCTTGATAATTAGTCCCTTCAATTGAGcattattacacccctg
tgtcacagacccggtggacctcccgccccggtggaaaaataggccaaaaa
atcgtccccgatggaaaaaataccctacattttcaaccccactgggaaat
tgccctatgattctatccccattgaaaattaaatgggaaaaattggactc
caaaaccatccccactggaatttttgagctggaaacaataaattttctat
ccccattgggatgtcgatagaaattttcacccCCAATGagggaaaaggtt
ccaccggggcactgagacaggggtgtattattaAGAGAGGCAACAAATAC
TATTTTTGAAGTCGTTATGTCCCAACCCACTAGGTGCACCGTAGTCGAAA
TATGTCTTACGGATGCTAGCATAGCAAAGTATATGCGttaaaaattgctc
aaataattCTTTTAATCCATTATAGAGAGAGATAGTAGAAGAAACATTAC
GTCACATTGTGTGCAACGATGCCAGGGACGAATGTAACGCTGAAATTGCA
AAAGCTCATTGCGGGAATCCTGGTCCTTCATTCATCAAAGAATATTAATT
AAATGAAACAAATAAGGGCTTCAAGGTCCAAATCAAATCGAGTGAGTCAA
TCAATAGCATGTACCACCCTAAACGCCCAGGGGCgatttttgctttttga
aaaaaagtcttgCCGTGTGTGTGGTTCTCTTTCGCAACGAAGACTGAGAC
GAGCTAGTAATTAAAGGCTATTCAATCAAATACAAACTAATCTTTCATCG
ATATGAGAAAGAAACACTAAGGTTTAACGGTGTcgtaaaaatgcattttt
ttggaCAAATGTTAATATTTTCCACCCTTAGAGagtttttagatgttctt
aaaaagGGTTCTAATTATCACTGATTATCTAAACTATACATTGTTCATTT
GGCCCCCTTTGGTTTCTTTCAGTATTTTGTGGAGACGCAAAACAATGCTT
AATGGAGACCATATTCACCTCAAAACGTTGGACAAAATCATCAACAGTAA
GGGTCTGCACAATGTTCGGAAGATGTAACAAACAGGGAATCGATGGTGGA
GAAGTCAACAGTGCACGGCAGAATCGTTATAAAACGTTCATTATTTTAAG
CTCCGTTTTCCTTGTTTTGACACTGACTGTTGGCATTCTTTTCGCATTGA
AAAAGAGGTATAGCAAAAAAATACTTACTTACCTACTTACTTACTATTGA
TGTAATTTTTGTCTCTATTTTGCCTGTATTTGATCAGGTTGCGACAAAAC
GGCTTGATATTTCTTTGCAATTTATCGAGAGCCTTTTGTACCTTAAATAT
CACCATCTTCCCTTCTTTAAATAGTAATGTGATTTAGACATGCGATATAA
AATTCTTATAGTCCGTCCCCCCAGGTTCAGGGAAAGCTTAACTGTGATGC
TCGTATCTaccatttttaccttttttgacaCCACTCAGAATTCTGAGCAA
GGAAATTTAATTGAAGTTTAAACTTAGTGCCAGTCTTGCTTATGAAAGAA
AGATTAATACACCGTTTCGCAGTCAGGCGAGTCCCactttttaccaccct
aaactcgatccaatcctttttttagactttttttattgtgtttaggcgcg
aaaaaaagactgggacggctttagggtggtaaaacggacaaaaaatgcct
gcgcggcaattggtggctacggtgtACTACTTATTACCAAGGTTAGTGCA
CGACTATTTCGAAAATGAGTATTGAATTTTGTGACATTTCTTATTTCAGG
TTAAAATTACAAATGAAAGTAGCGAGCTCTCAGCAATATGTTCACAACAA
CAATAAAGCGACACAAATCGATCGAACAACGAACGAAGTGACGTCGAAGT
TTTGAGAAAGAAATATGTCGTAAAGCTG Coding sequence (CDS) from alignment at scaffold_425:214983..217810+ >TCONS_00064844 ID=TCONS_00064844|Name=TCONS_00064844|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_425:214983..217810+ (Clytia hemisphaerica)
TCGATGAAGACAACTCGGATATTAAATCCATTACAAACTTCAGTATTGAT
AAAGACTTCGTCAATGATGACAAGAGAGACATCAATCACCGATCCGAAAA
CGCATCAGAGTAACACAATATTTCCCAGTGAGGTCGCAAGTGGAATACTA
CCAGTCTTTGTAACAGAAACATCTTCGATAATCGAAGCATCTNTCAGTGA
GGTCGCAAGTGAAATACTACCAGCCTTTGTAACAGAAACATCTTCGATAA
TCGAAGCATCTTCACAATCATTCAACCAACATTCTTTGGCAGCTACTCAT
TCCATTAGTAAAAcgacaaaaataatttcaacagAGGAGTATCAACATTT
ACATCTCTCTTCGACATCCATTCAAACAAAGCTGGAAGCTTCAACAAGAA
ACTTCAAAACTTCAACAAAGAATTTCGAGACTTCAACAAAGAATTTCGAG
acttcaacaaaaaatatcGAGACTTCAACAAAGAATTTCGAGacttcaac
aaaaaatatcGAGACTTTAACAAAAGATTTCGAGacttcaacaaaaaata
tcgagagtttattaaaaaatatcgagacttcaacaaaaaatatcgagact
ttaacaaagaatttcgagacttcaacaaaaaatatcGAGATCAAATCAAC
TAAAAGTGAGTTGTTACCAGTTAAGACCACCATCGCTATGCAAAGAAATT
GTTCGATAGAAAGTCTGGACTTCTTCATTGAGATGAAAGATGAAAACGAA
AAGAGAGAGATAGTAGAAGAAACATTACGTCACATTGTGTGCAACGATGC
CAGGGACGAATGTAACGCTGAAATTGCAAAAGCTCATTGCGGGAATCCTG
GTCCTTCATTCATCAAAGAATATTAATCGATGAAGACAACTCGGATATTA
AATCCATTACAAACTTCAGTATTGATAAAGACTTCGTCAATGATGACAAG
AGAGACATCAATCACCGATCCGAAAACGCATCAGAGTAACACAATATTTC
CCAGTGAGGTCGCAAGTGGAATACTACCAGTCTTTGTAACAGAAACATCT
TCGATAATCGAAGCATCTNTCAGTGAGGTCGCAAGTGAAATACTACCAGC
CTTTGTAACAGAAACATCTTCGATAATCGAAGCATCTTCACAATCATTCA
ACCAACATTCTTTGGCAGCTACTCATTCCATTAGTAAAAcgacaaaaata
atttcaacagAGGAGTATCAACATTTACATCTCTCTTCGACATCCATTCA
AACAAAGCTGGAAGCTTCAACAAGAAACTTCAAAACTTCAACAAAGAATT
TCGAGACTTCAACAAAGAATTTCGAGacttcaacaaaaaatatcGAGACT
TCAACAAAGAATTTCGAGacttcaacaaaaaatatcGAGACTTTAACAAA
AGATTTCGAGacttcaacaaaaaatatcgagagtttattaaaaaatatcg
agacttcaacaaaaaatatcgagactttaacaaagaatttcgagacttca
acaaaaaatatcGAGATCAAATCAACTAAAAGTGAGTTGTTACCAGTTAA
GACCACCATCGCTATGCAAAGAAATTGTTCGATAGAAAGTCTGGACTTCT
TCATTGAGATGAAAGATGAAAACGAAAAGAGAGAGATAGTAGAAGAAACA
TTACGTCACATTGTGTGCAACGATGCCAGGGACGAATGTAACGCTGAAAT
TGCAAAAGCTCATTGCGGGAATCCTGGTCCTTCATTCATCAAAGAATATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064844-exon-scaffold_425-1491911889:214983..215737 | TCONS_00064844-exon-scaffold_425-1491911889:214983..215737 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1510915933:214983..215737 | TCONS_00064844-exon-scaffold_425-1510915933:214983..215737 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1575043694:214983..215737 | TCONS_00064844-exon-scaffold_425-1575043694:214983..215737 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1491911889:216358..216523 | TCONS_00064844-exon-scaffold_425-1491911889:216358..216523 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1510915933:216358..216523 | TCONS_00064844-exon-scaffold_425-1510915933:216358..216523 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1575043694:216358..216523 | TCONS_00064844-exon-scaffold_425-1575043694:216358..216523 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1491911889:216855..217089 | TCONS_00064844-exon-scaffold_425-1491911889:216855..217089 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1510915933:216855..217089 | TCONS_00064844-exon-scaffold_425-1510915933:216855..217089 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1575043694:216855..217089 | TCONS_00064844-exon-scaffold_425-1575043694:216855..217089 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1491911889:217682..217810 | TCONS_00064844-exon-scaffold_425-1491911889:217682..217810 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1510915933:217682..217810 | TCONS_00064844-exon-scaffold_425-1510915933:217682..217810 | Clytia hemisphaerica | exon |
| TCONS_00064844-exon-scaffold_425-1575043694:217682..217810 | TCONS_00064844-exon-scaffold_425-1575043694:217682..217810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:214983..217810 + |
Blast
The following BLAST results are available for this feature:
|
