TCONS_00064839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064839
Unique NameTCONS_00064839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064839 ID=TCONS_00064839|Name=TCONS_00064839|organism=Clytia hemisphaerica|type=transcript|length=1608bp
CATCGGATGCTGTTTTACTGAAGCAATGGAATGCTAATTCACAACAGCAG
ATTAAAGAGGAAGAGTTTGACTTAACTTTCAATGAAGTTAATCCaacaaa
ccaaaatattttggcagAATTAACAGCACAAACTCAAAAACTTGAGAACA
CGCTACCCCTAATTCAACAAGAAATACAGAAAGTGCCAACAGAATCTTCA
GAGCAGAAATATTCTCCCAGAGAAAATATTGACATGGATGGAGATACGCC
ATTGCATATTCTGGTAGTCCGATGTGAAGGGAGAAACAAGCAAACGAGAG
GTTTTGGATTATCTCAGAGAAATAACTATGAAAATGATCAGGCCAGAAAA
GATTTCTTTGATAAAGCACATCTCTACAAACAATACGTCAACCGACAAAA
CAATGATGGAATGACACCACTACACTACGCCGTGGAAATTGGTTGCCCGC
AAATGGTTCACAAGCTGCTTCAACTGGGGAGCTGTTTAAACCGATTCAAC
AACAGATTAGAATCTCCAATACACGTGGCTTTGAGACAAAGGAAAGATTC
TGATTTGTACAATTTCACAACAATGGAACATTTGAAACAGATTGTGGAGC
AACTTTTACGTGCTAACCAAGCAAGATATGGTGACGATCACATGGATTTG
AACAAGAAGGATAAAAATGGTCTGACTTGTGTTCATCTGGCTTGCTTGTA
CGCAAACCACGAAGCAACAAATTTGGTCAATCTATTGAAATGCTATGGTG
CAGATCTTGATGAAAAGGAAGATCGACAAGGATTCACTCCTCTACAGTTC
ATCATCAACAAAGGGAAGGATTGTAATCTTCAAAAGCCTGAAGGAATCAA
ACAAAGAAATGCTTACTTCAAGACAGCAAAGCATCTGATCACCCAACAGA
AAGTCGATGTGACGTCACTATCCATGGCTGAAGACACTGCATTGCATTTA
GCCTGTGCAGCCAACGATAAGGGGCTAGTGGAGTTGCTGTTGGGTCGTGA
TGAAATTGAAGTCAACCTGAAGAATGCGTTCaagaaaaatgagaaagatT
TGACGGATGACGACcagATCAAAGAGATGCTTGAAGTGAAATatcgtcaa
aaaagaagaaaacgaaagaaTAACGAACAAGGGGTGACAAGCGGCAAGGC
GAAAAAGGCGAAATAAATTCAATATGTTTTCATTTCGGCGAAGacctgta
aaaatgaaaaataaccatatatacatttttattcagttttatttttttca
gttttaaaaatttttattgtaattaaGCATAAGTAACCATGAAAAATAAC
ATTtggaaaatccaaaaaaatcatttttgtaaatagaGGCGAAATTTTGa
tattaaaaaaagttcaaaaggattcgtatttttttttacttttgagcttt
taaaatttaaaatgtaaatataTTATGTAGATTATTTAAAGATTGATCGA
TACTTTAAATTGCTTGCCCCCCGTATCTCGTACCAGTTGtcacatacacg
cttttttataagaatagtgtactttggatgagggccaagtattcttaaga
aattgacaaaatcgagggtgaaatattcttaacatatacttgatttttta
gacttgac
Run BLAST on NCBI

transcript from alignment at scaffold_425:165240..171993+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064839 ID=TCONS_00064839|Name=TCONS_00064839|organism=Clytia hemisphaerica|type=transcript|length=6754bp|location=Sequence derived from alignment at scaffold_425:165240..171993+ (Clytia hemisphaerica)
CATCGGATGCTGTTTTACTGAAGCAATGGAATGCTAATTCACAACAGCAG
ATTAAAGAGGAAGAGTTTGACTTAACTTTCAATGAAGTTAATCCaacaaa
ccaaaatattttggcagAATTAACAGCACAAACTCAAAAACTTGAGAACA
CGCTACCCCTAATTCAACAAGAAATACAGAAAGTGCCAACAGAATCTTCA
GAGCAGAAATATTCTCCCAGAGAAAATATTGACATGGATGGAGATACGTA
CGTTTATTTTTATCTATATTGCCTGTATTACCTTGATAAGATATCCCTTA
AGATATACGTGTGTTTCGCTGACTGaataaaaagtgaaataaaTAGAGAA
GTTGTGTAGAAGGCACTGAGACCCATTTTGACAACCTTTAAGGCATTGat
agaggtgccaactctcacacATTGGGCGTGAGACTCATGCATTTCCACAC
TGTCTCACGCAAGGTTGATTTCTCACACATTTTTGAGATTTGAGTTTTCC
CCGTTTTTCtgattctttgtaaaaagtttccctgatttcccaatttttgg
taaaagtttccttgattttccgattttcggaaaaaagtttccctgatttc
tgatttttttgaaaaatttttctgatttctgatatcggaaaattagaaaa
accaaGCTAAAATTTCGGATTCCgcttcgaaatttttatctcatgcAATA
TGAATATCTCAAGCAGGCCAaattttagaaaggcaaggcagtgtccgttg
gtggccaaaaagggcactttttcctATGTTGTTCCACTAAAAAGGcagtt
tttaccaatatttaaGTAATTTCAGGAGGGGCATAAAGAATTGGCAGGTC
TGATATTTtacatttaaaagattttgaatgGAACACGTTGATTAAGAACC
TCTCAATCAAAAGAAACTCTGCATAGTGCAtgcccccccccaatattttg
caaagtaattttttttactttaaaaaatcttatatataccgtttagaggg
gtgaaataagggtaaaaagtcgaaaattttcTTCGTCGCCCAACCATGGT
GGGCGGCAtattttttggccccctcaattcgattcgcacgccgggggcca
tgtaGTGTTTAGGAAATTCCCAAAAGCCAGTCTTATGAATGATTTTCCTA
ACATCTAAAAACAGATTtcataccgtaacttggtcgatattagaccaact
tacggtatgcaCAATGTGCATGTGTAAAAAAAGCATAAGGCTTAAAATCA
GCCAGTCTTACCTCCACAAAGTGATATGTGGCAAACCTTTCAATAAGGTG
TATACCAAGGAAAGAAGGATGAGCAAAACTTAGTTTTTACACTAATATTT
GAGAAACTTATTTTGAAAAGAGACCTTTTTAGCTACCTTTTTAGTCTCAG
CCATATTAGCCAAAATTTGAGCTTGAAAAAGTCACTGCTGaaagatataa
aataaaatgagtTTTTAATTGCACAAAACTTTGCGCTTCAGCTTGATCCC
AATGTATGAGTCCTGCAAAAAACCTCTAGAATACACTGCTAGGaatgatt
tgaaaaatacaaggaTAACATCAAAAATGAGCAATTTAATGCTAATAAAA
TCGATAATAAaataacaacctatttttttcttattcaagTATGGTAATTA
TTAAGTActtacaaaaattacaaacaaatttaaacaaagatattttatag
aatagagaaaaatttttgtaaactaCTTAAATCTATATTCAAATTTAAGT
TTtgtatataattataaaaaagcaGCTCTGcaataaagcaaaacaatgaa
GTCAAAAAACTTTCCTCTCATTCAATGATGTTCTACTTCATTTTGAACAT
ATTGTGTGCTCGAATCTTTTTCGATGCCTTTCATAAATTCATGCATGTCA
TCGTGTCCTTCATCTTCAAGTTGATGACTTTCCTCTGGTTTCTTTGTTGT
tgtcattttgtatttatcgGGAATATTACCAACAATTTCAACTTCTAGGA
CCTTTCCAGTCTGTTTAGTTTTAGGCTTGTCTTCTTTCGTCAAAATCATT
TCTTCAACACACTCATTCTCAACAGTTTCATTTTGAGATggtattttttc
accaaaagaTGAAACAAAGTCTTTCATATCATCCTCAGCcatcttgattt
gatttgttttgataaaaaaattacaaaaaataattttcttatacTAACTC
AAAAACAGCATGCAAAATCTTTCTTCATACTAATTCAAATAAGCCACACA
GTTCCTGATCAGCTCCTCTGTATAACCTTTGAGGAACCTTTCATCAAATA
CAACTCTATCAGTTTCGCTGAAAAGTTAAAAGACAGGATCCTTGAGATTG
TTGATTTCACTGAGCATGCTGTTTCAAGCATTTCTTTCTTTCAGCGTTTC
AGTTTGGAGAAATTAACTATATTATCTAACTTATAAATATAATGAATCAT
ACTAGAGATTTTCAAGGGAAAACAAGTAAAGTAAGATTTGCCTCATCCAA
GACATCTCTTgatacaaatttttacaaacttGATATTCCTTTCTAGGCCA
TTGCATATTCTGGTAGTCCGATGTGAAGGGAGAAACAAGCAAACGAGAGG
TTTTGGATTATCTCAGAGAAATAACTATGAAAATGATCAGGCCAGAAAAG
ATTTCTTTGATAAAGCACATCTCTACAAACAATACGTCAACCGACAAAAC
AATGATGGAATGGTACGTatgaaaaaaaggttttaaCACTTCTAGCGTGA
TGAAGTATTAAGTTATGGGGGTAATATTGACCCTTCTTTTCATCATATAG
GATAAATAGCAAAGGGGATAAGGAAGAGTACTGTTGCATAAACATAACCT
TGTTGATTCCAATCAATGCAAGATTTAGGTTTGAATTTAAAGGggtaatc
agatggtttgtaattTATGTCCCCATATGGCATGTGGGATCCTTTtattg
tcctgagcaaaatctcaaaatatttttaactattttccaaagtcgagatt
ttaagttacaagtttttggcttttagaataaaacaatagaatttcaacgt
aataACCGTGTAAGaaccctttttcaaaaatttcaaattttagtttctcg
atcttggaaaattgttacacaaaaatactttgaggttttactaATGTACT
AAGGACCACAGAAGATTTCTGTAATCTAAATATCTCTAacaatctgatta
tccctttaatgtTTTTTACATTTAGACACCACTACACTACGCCGTGGAAA
TTGGTTGCCCGCAAATGGTTCACAAGCTGCTTCAACTGGGGAGCTGTTTA
AACCGATTCAACAACAGATTAGAATCTCCAATACACGTGGCTTTGAGACA
AAGGAAAGATTCTGATTTGTACAATTTCACAACAATGGAACATTTGAAAC
AGATTGTGGAGCAACTTTTACGTGCTAACCAAGCAAGATATGGTGACGAT
CACATGGATTTGAACAAGAAGGATAAAAATGGTATGTCATCAATAATCAA
tattctttgtttatttttacgccagacaaataaacaaagcgATCCCAAAA
AGTCCCTTTCTAAAGATATGATTTGACTCAAAGAGGCTCAAAGTTCAGCT
GACTGGCTAATTTGGAAATTCCAAATGAACACGCGAGGGAAAATCTTAAT
CAACATTCGTAGAAAAGCTGATTCATGAATttatattgtatattttttta
ataagaattcgTAATGAAACAAGAATTTTTCACCTTAGGTCTGACTTGTG
TTCATCTGGCTTGCTTGTACGCAAACCACGAAGCAACAAATTTGGTCAAT
CTATTGAAATGCTATGGTGCAGATCTTGATGAAAAGGTACTTTGAGTTTT
TTTCTGGTTCTGTCAGTTCCAACAATTATTCTTATACGAAGCTCGTGGTC
ATCTGGTTTTACCCAATTTACACATCAAGTTTCTATGAAAGACCAGTGGG
GAAGTGAGTACTGATGTTTAGAAGAGTTATCtctaaatttccaaaagaac
AGCCTTTAATTGCTTGGTTTTCAGCCaactaaaagtttttttgattagaa
caaactatataagaacataaggcttcgatggccaaactATATAGAACAAC
TTAAGAAAATGGGaacattttgagattattttcagGTCTAAAACTAAAAA
GAACATCCAAGAGATTcgaaaaactttggacgttctTATTAAAAAGACGT
GTAATAAGTCAGCCGTCCATTTCCTTTGACCTTGTAACCTGACACTTTAA
CAACAAGATCCGTTCCTCGTTTACAGGAAGATCGACAAGGATTCACTCCG
CTACAGTTCATCATCAACAAAGGGAAGGATTGTAATCTTCAAAAGCCTGA
AGGAATCAAACAAAGAGAGGCTTACTTCAAGACAGCAAAGCATCTGATCA
CCCAACAGAAAGTCGATGTGACGTCACTATCCATGGCTGAAGACACTGCG
TTGCATTTAGCCTGTGCAGCCAACGATAAGGGGCTAGTGGAGTTGCTGTT
GGGTCGTGATGAAATTGAAGTCAACCTGAAGAATGCGTTCAANACCACTA
CACTACGCCGTGGAAATTGGTTGCCCGCAAATGGTTCACAAGCTGCTTCA
ACTGGGGAGCTGTTTAAACCGATTCAACAACAGATTAGAATCTCCAATAC
ACGTGGCTTTGAGACAAAGGAAAGATTCTGATTTGTACAATTTCACAACA
ATGGAACATTTGAAACAGATTGTGGAGCAACTTTTACGTGCTAACCAAGC
AAGATATGGTGACGATCACATGGATTTGAACAAGAAGGATAAAAATGGTA
TGTCATCAATAATCAAtattctttgtttatttttacgccagacaaataaa
caaagcgATGCCAAAAAGTCCCTTTCTAAAGATATGATTTGACTCAAAGA
GGCTCAAAGTTCAGCTGACTGGCTAATTTGGAAATTCCAAATGAACACGC
GAGGGAAAATCTTAATCAACATTCGTAGAAAAGCTGATTCATGAATttat
attgtatatttttttatataagaattcGTAATGAAACAAGAATTTTTCAC
CTTAGGTCTGACTTGTGTTCATCTGGCTTGCTTGTACGCAAACCACGAAG
CAACAAATTTGGTCAATCTATTGAAATGCTATGGTGCAGATCTTGATGAA
AAGGTACTTTGAGTTTTTTTCTGGTTCTGTCAGTTCCAACAATTATTCAT
CTTATACGAAGCTCGTGGTCATCTGGTTTTACCCAATTTACACATCGAGT
TTCTATGAAAGACCAGTGGGGAAGTGAGTACTGATGTTTAGAAGAGTTAT
CtctaaatttccaaaagaacAGCCTTTAATTGCTTGGTTTTCAGCCaact
aaaagtttttttgattagaacaaactatataagaacataaggcttcgatg
gccaaactATATAGAACAACTTAAGAAAATGGGaacattttgagattatt
ttcagGTCTAAAACTAAAAAGAACATCCAAGAGATTcgaaaaactttgga
cgttttaATTAAAAAGACGTGTAATAAGTCAGCCGTTCATTCCTTTTACC
TGACACTTTAACAACAAGATCCGTTCCTCGTTTACAGGAAGATCGACAAG
GATTCACTCCTCTACAGTTCATCATCAACAAAGGGAAGGATTGTAATCTT
CAAAAGCCTGAAGGAATCAAACAAAGAAATGCTTACTTCAAGACAGCAAA
GCATCTGATCACCCAACAGAAAGTCGATGTGACGTCACTATCCATGGCTG
AAGACACTGCATTGCATTTAGCCTGTGCAGCCAACGATAAGGGGCTAGTG
GAGTTGCTGTTGGGTCGTGATGAAATTGAAGTCAACCTGAAGAATGCGTT
CaagaaaaatgagaaagatTTGACGGATGACGACcaggtaattttgaaaa
aaataatttctttttactGGGAGACTTCAATCACATGTCagcatttcaac
ttttaaatagggataaattaaatgaagaaataTATAAAATCCACCACTTC
CTTCTGCCTGGAATATCAGTATTAAAATGTGCTCACGTAAATATAACATT
TCCACTTTACTGAAACAAAATTGAGTTTTATATCTTTCTTCGATCTACGG
CAACAAAAGATGTTTATAGTCATCGAAAATGGGGCATGATTCTCCCTGAT
TTTGCGATTGTCTTGATGCTCTAGAATATATTTTTAACGAATTACATTTC
TGTATAATTTCAGATCAAAGAGATGCTTGAAGTGAAATatcgtcaaaaaa
gaagaaaacgaaagaaTAACGAACAAGGGGTGACAAGCGGCAAGGCGAAA
AAGGCGAAATAAATTCAATATGTTTTCATTTCGGCGAAGacctgtaaaaa
tgaaaaataaccatatatacatttttattcagttttatttttttcagttt
taaaaatttttattgtaattaaGCATAAGTAACCATGAAAAATAACATTt
ggaaaatccaaaaaaatcatttttgtaaatagaGGCGAAATTTTGatatt
aaaaaaagttcaaaaggattcgtatttttttttacttttgagcttttaaa
atttaaaatgtaaatataTTATGTAGATTATTTAAAGATTGATCGATACT
TTAAATTGCTTGCCCCCCGTATCTCGTACCAGTTGtcacatacacgcttt
tttataagaatagtgtactttggatgagggccaagtattcttaagaaatt
gacaaaatcgagggtgaaatattcttaacatatacttgattttttagact
tgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040668XLOC_040668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064839-exon-scaffold_425-1491911889:165240..165486TCONS_00064839-exon-scaffold_425-1491911889:165240..165486Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:165240..165486TCONS_00064839-exon-scaffold_425-1510915933:165240..165486Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:165240..165486TCONS_00064839-exon-scaffold_425-1575043694:165240..165486Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1491911889:167786..167951TCONS_00064839-exon-scaffold_425-1491911889:167786..167951Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:167786..167951TCONS_00064839-exon-scaffold_425-1510915933:167786..167951Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:167786..167951TCONS_00064839-exon-scaffold_425-1575043694:167786..167951Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1491911889:168465..168720TCONS_00064839-exon-scaffold_425-1491911889:168465..168720Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:168465..168720TCONS_00064839-exon-scaffold_425-1510915933:168465..168720Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:168465..168720TCONS_00064839-exon-scaffold_425-1575043694:168465..168720Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1491911889:170295..170392TCONS_00064839-exon-scaffold_425-1491911889:170295..170392Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:170295..170392TCONS_00064839-exon-scaffold_425-1510915933:170295..170392Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:170295..170392TCONS_00064839-exon-scaffold_425-1575043694:170295..170392Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1491911889:170827..171126TCONS_00064839-exon-scaffold_425-1491911889:170827..171126Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:170827..171126TCONS_00064839-exon-scaffold_425-1510915933:170827..171126Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:170827..171126TCONS_00064839-exon-scaffold_425-1575043694:170827..171126Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1491911889:171453..171993TCONS_00064839-exon-scaffold_425-1491911889:171453..171993Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1510915933:171453..171993TCONS_00064839-exon-scaffold_425-1510915933:171453..171993Clytia hemisphaericaexon
TCONS_00064839-exon-scaffold_425-1575043694:171453..171993TCONS_00064839-exon-scaffold_425-1575043694:171453..171993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:165240..171993 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.975812	1.63119	0.708467	0.344001	2.48376	2.00596	3.04958	5.29372	3.75141	12.5962	5.19775	5.87997	9.46645	9.95951	10.561	10.1955	2.25581	3.36485	8.74168	10.436	2.3291	3.04817	3.32275	4.0662	7.0675	7.67561	10.7099	10.7505	4.17671	2.38637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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