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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064824 ID=TCONS_00064824|Name=TCONS_00064824|organism=Clytia hemisphaerica|type=transcript|length=3214bpRun BLAST on NCBI protein sequence of TCONS_00064824-protein >TCONS_00064824-protein ID=TCONS_00064824-protein|Name=TCONS_00064824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=983bp MKRSFSQAESSSSGSATITVPPQTSSTSQINTIPPLKLRIKQQSIVQELTRun BLAST on NCBI transcript from alignment at scaffold_425:4463..19343+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064824 ID=TCONS_00064824|Name=TCONS_00064824|organism=Clytia hemisphaerica|type=transcript|length=14881bp|location=Sequence derived from alignment at scaffold_425:4463..19343+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_425:4463..19343+ >TCONS_00064824 ID=TCONS_00064824|Name=TCONS_00064824|organism=Clytia hemisphaerica|type=CDS|length=32472bp|location=Sequence derived from alignment at scaffold_425:4463..19343+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064824 vs. Swiss-Prot (Human)
Match: INT4 (Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2) HSP 1 Score: 491.115 bits (1263), Expect = 1.205e-155 Identity = 309/929 (33.26%), Postives = 500/929 (53.82%), Query Frame = 2
Query: 392 SEECEQVIRHLKDLIRKESDHLVRAKAIELIKEICYLPSSNKMQCVEEIFDCLHKESNHFVLSQIFNSLSRAAILIPNKADIIQKILKASIKKLDDSHHDVRCACLNLIGQLCPSEPIRMSSTRTV---DPMELFSEFSADQDPRVRTVVYQSLLTLHQRNRPLDISVYEKATSALTDDYENVRLAAIKLVWVFSHTTPNSMMKT-ESGEEIRLLDDAFIKICNMSNDISMKVRAKAVGLLGSLHDVSLHLLQQTLDKKLMSHGKKTKSFNQRQLERFRXXXXXXXXXAWATGTKWASDDPSILKKEIKEDEVKLMNSGSCGVFVKSLEDEFMEVRTAGVDSLCELANQNPSFARMSTDFLVDMFNDEIESVRLNSVNSLMKLHKYVDLREDQLDTILECLNDFNQVVRNAVRDLLAQCQMATQSCLYATVLALLTNLKKYANDRESIWRCMKSLGERHPYFVSSLVPQIFITHPFYAIPEPNIDDPAHIAVSALVFNATVHSPPILSLLPPFAKQHYDYLRESLPEFIPALXXXXXXXXXXXXXXXXXXXLE--NRFFQNTIQRLYNVLEKPSNRSMSEINSCLSDLNGLKKLHRSIRPSAEFLALFFKSYQMLRKCQNERTWNL--PPALTASTECSSLQNDVENLLEMSYNMEYSFPGITSKSTCVLRMXXXXXXXXXXXXXXXXXPKAQQTQKNN--FKLWKIFFKRLNNFKEHLTTSSSDAHAYQSVIELQNSLEQNLSDI---------TTLLQLVQNFFVKQT-ITLDMNNRLRQCSATILEPRNNVDNPFRFSAGLVLAVDFVSFIHNIDDVAN-VYIKITYPDSQIVYQKPKNTEFHWENRSRQKLLCKLLLSHQSWTEPCFIKVCVVLIHPTDIKRE----LYHKQSDNQVQRNDELYKSFLKISDEVKIYVQPKPVTR 3103
+E E V+R L + KE+D VR K L+ + + +++ + L E +H VL+Q+ ++L +P I +++ + K L D+ H VR CL L+G L E + D ++ ++ +DQDPRVRT +++L LH+R L ++Y +A L+DDYE VR AA++L+WV S P S++ S EEIRL+DDAF KIC+M +D S VR +A LLGS+ VS H L+QTLDKKLMS ++ ++ ++R E + G +++G KW D P K+E+ V L+ SG+CG FV LEDE EVR A V++LC LA +PSFA DFLVDMFNDEIE VRL S++++ K+ + LREDQLDT+L L D ++ +R A+ +LL ++T+ ++ ++ LL NL KY DR+SIW+C+K LG RHP V LVP++ THPF+ EP++DDPA+IAV L+FNA P + +L +HY YLR+SL +PAL S + +F Q +++R+Y++ + + + DL L +L + A+F A + + +L K E+ WN+ P L S S+ + ++E +Y ME+ + G+ +K ++ +R+ A +L +++ A+ T+ + F + + F + ++ F+ + + LQ+S L D+ +++++Q + + L + ++ + SATI+EP DNP RF++GLV+A+D + + ++ D N V +++ YPD Q PK +F R +L+ ++ LSH +WTE C ++V ++L + + + + + QV+ + E + S VK+Y+ PKP R
Sbjct: 66 AESVEGVVRILLEHYYKENDPSVRLKIASLLGLLSKTAGFSPDCIMDDAINILQNEKSHQVLAQLLDTLLAIGTKLPENQAIQMRLVDVACKHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELY-------SSGEFSSGRKWGDDAP---KEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCPTMPALFSDHTFRHYAYLRDSLSHLVPALRLPGRKLVSSAVSPSIIPQEDPSQQFLQQSLERVYSLQHLDPQGAQELLEFTIRDLQRLGELQSELAGVADFSATYLRCQLLLIKALQEKLWNVAAPLYLKQSDLASAA---AKQIMEETYKMEFMYSGVENKQVVIIHHMRLQAKALQLIVT------ARTTRGLDPLFGMCEKFLQEVDFFQRYFIA---------DLPHLQDSFVDKLLDLMPRLMTSKPAEVVKILQTMLRQSAFLHLPLPEQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADFRNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSPQVETSIE---GTIPFSKPVKVYIMPKPARR 963 The following BLAST results are available for this feature:
BLAST of TCONS_00064824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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