TCONS_00064813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064813
Unique NameTCONS_00064813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064813 ID=TCONS_00064813|Name=TCONS_00064813|organism=Clytia hemisphaerica|type=transcript|length=346bp
CCATTAAACGCCGCGAAACATCTTGTGGAATGTTTTTCAAAGCTGCCGAA
AAACATAATTGCTTTGAATAATGCAGCCTTATGCAACGACCTTGTTGAGG
AAGTGCAGTTTGCGCAAGAAGCAAGACTATCCAAACATTGTTCTCTTGCT
GATTTAAGAAAATTCACAGAAGAAGACCTGGCCAAAAGTATaaacacttt
tttgaaaaggacCTTTGAGTTAAACTCGGGGGTAAAGAAATTGAAGGAAT
CAGGATTTGGTGATGGCGATGTTAGGGAATATGATACAGATATATGCTCT
ATATGCAGAGAAAAACTTTGAACGGAAGATGGTTTGCATTTGTAAC
Run BLAST on NCBI

protein sequence of TCONS_00064813-protein

>TCONS_00064813-protein ID=TCONS_00064813-protein|Name=TCONS_00064813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
PLNAAKHLVECFSKLPKNIIALNNAALCNDLVEEVQFAQEARLSKHCSLA
DLRKFTEEDLAKSINTFLKRTFELNSGVKKLKESGFGDGDVREYDTDICS
ICREKL
Run BLAST on NCBI

transcript from alignment at scaffold_424:15368..15713

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064813 ID=TCONS_00064813|Name=TCONS_00064813|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_424:15368..15713 (Clytia hemisphaerica)
GTTACAAATGCAAACCATCTTCCGTTCAAAGTTTTTCTCTGCATATAGAG
CATATATCTGTATCATATTCCCTAACATCGCCATCACCAAATCCTGATTC
CTTCAATTTCTTTACCCCCGAGTTTAACTCAAAGgtccttttcaaaaaag
tgtttATACTTTTGGCCAGGTCTTCTTCTGTGAATTTTCTTAAATCAGCA
AGAGAACAATGTTTGGATAGTCTTGCTTCTTGCGCAAACTGCACTTCCTC
AACAAGGTCGTTGCATAAGGCTGCATTATTCAAAGCAATTATGTTTTTCG
GCAGCTTTGAAAAACATTCCACAAGATGTTTCGCGGCGTTTAATGG

Coding sequence (CDS) from alignment at scaffold_424:15368..15713

>TCONS_00064813 ID=TCONS_00064813|Name=TCONS_00064813|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_424:15368..15713 (Clytia hemisphaerica)
TCAAAGTTTTTCTCTGCATATAGAGCATATATCTGTATCATATTCCCTAA
CATCGCCATCACCAAATCCTGATTCCTTCAATTTCTTTACCCCCGAGTTT
AACTCAAAGgtccttttcaaaaaagtgtttATACTTTTGGCCAGGTCTTC
TTCTGTGAATTTTCTTAAATCAGCAAGAGAACAATGTTTGGATAGTCTTG
CTTCTTGCGCAAACTGCACTTCCTCAACAAGGTCGTTGCATAAGGCTGCA
TTATTCAAAGCAATTATGTTTTTCGGCAGCTTTGAAAAACATTCCACAAG
ATGTTTCGCGGCGTTTAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040655XLOC_040655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064813-exon-scaffold_424-1491911889:15368..15713TCONS_00064813-exon-scaffold_424-1491911889:15368..15713Clytia hemisphaericaexon
TCONS_00064813-exon-scaffold_424-1510915933:15368..15713TCONS_00064813-exon-scaffold_424-1510915933:15368..15713Clytia hemisphaericaexon
TCONS_00064813-exon-scaffold_424-1575043694:15368..15713TCONS_00064813-exon-scaffold_424-1575043694:15368..15713Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064813-proteinTCONS_00064813-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_424supercontigscaffold_424:15368..15713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.408055	1.16123	0	0	2.80013	3.03199	3.66833	3.32408	0.995993	2.53053	1.5111	1.68209	0.323743	0.551755	1.40069	0.711746	0.583203	0.694087	0.599897	2.25938	1.77079	1.28023	0.296919	0.746414	0	0	0	0.705515	0.287426	0.878526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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