TCONS_00064790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064790
Unique NameTCONS_00064790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064790 ID=TCONS_00064790|Name=TCONS_00064790|organism=Clytia hemisphaerica|type=transcript|length=510bp
ACTTTGGAGACTTCTTTCACAGATTCGACAATAGAAATCTTAACCAATCA
TGAGGCGTATTTCAATAGGTGCTGACAGACGGCGCTACATCGTAACCTTG
GAAGCCATCGATGCTAACGACATCCCTTCgtttaaatctaatttttcacG
TCTCAAAGACTTTAATAAACAAATCGAACTATCAAATTATGGAGAACCTA
CAACCATATTATGTAGGGCGGCTCTATCGGGCCGTAAGGAGATTTGCGAG
ATTATTTTACAAGCGCCCGGAATCAATATCCACCAAACGGACGGGAAAGG
CGCCACACCTATACAACTTGCCATGGATTTTAAACAACTTCAAACAGCTG
AGTTTTTGATTGAGAAAGGAGCGAACCCGATTTTCGATGATAAACGAACA
GCTCTACATTTAGCAGCGGAAATCGGGAATACCGGAATCATAAATGCTGC
TTTGACGAAAGGAATCAGTCCGGATATTACGGATAAAGACGGAAACACCG
TATTACATAT
Run BLAST on NCBI

protein sequence of TCONS_00064790-protein

>TCONS_00064790-protein ID=TCONS_00064790-protein|Name=TCONS_00064790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MRRISIGADRRRYIVTLEAIDANDIPSFKSNFSRLKDFNKQIELSNYGEP
TTILCRAALSGRKEICEIILQAPGINIHQTDGKGATPIQLAMDFKQLQTA
EFLIEKGANPIFDDKRTALHLAAEIGNTGIINAALTKGISPDITDKDGNT
VLH
Run BLAST on NCBI

transcript from alignment at scaffold_423:127854..128363

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064790 ID=TCONS_00064790|Name=TCONS_00064790|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_423:127854..128363 (Clytia hemisphaerica)
ATATGTAATACGGTGTTTCCGTCTTTATCCGTAATATCCGGACTGATTCC
TTTCGTCAAAGCAGCATTTATGATTCCGGTATTCCCGATTTCCGCTGCTA
AATGTAGAGCTGTTCGTTTATCATCGAAAATCGGGTTCGCTCCTTTCTCA
ATCAAAAACTCAGCTGTTTGAAGTTGTTTAAAATCCATGGCAAGTTGTAT
AGGTGTGGCGCCTTTCCCGTCCGTTTGGTGGATATTGATTCCGGGCGCTT
GTAAAATAATCTCGCAAATCTCCTTACGGCCCGATAGAGCCGCCCTACAT
AATATGGTTGTAGGTTCTCCATAATTTGATAGTTCGATTTGTTTATTAAA
GTCTTTGAGACgtgaaaaattagatttaaacGAAGGGATGTCGTTAGCAT
CGATGGCTTCCAAGGTTACGATGTAGCGCCGTCTGTCAGCACCTATTGAA
ATACGCCTCATGATTGGTTAAGATTTCTATTGTCGAATCTGTGAAAGAAG
TCTCCAAAGT

Coding sequence (CDS) from alignment at scaffold_423:127854..128363

>TCONS_00064790 ID=TCONS_00064790|Name=TCONS_00064790|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_423:127854..128363 (Clytia hemisphaerica)
ATGTAATACGGTGTTTCCGTCTTTATCCGTAATATCCGGACTGATTCCTT
TCGTCAAAGCAGCATTTATGATTCCGGTATTCCCGATTTCCGCTGCTAAA
TGTAGAGCTGTTCGTTTATCATCGAAAATCGGGTTCGCTCCTTTCTCAAT
CAAAAACTCAGCTGTTTGAAGTTGTTTAAAATCCATGGCAAGTTGTATAG
GTGTGGCGCCTTTCCCGTCCGTTTGGTGGATATTGATTCCGGGCGCTTGT
AAAATAATCTCGCAAATCTCCTTACGGCCCGATAGAGCCGCCCTACATAA
TATGGTTGTAGGTTCTCCATAATTTGATAGTTCGATTTGTTTATTAAAGT
CTTTGAGACgtgaaaaattagatttaaacGAAGGGATGTCGTTAGCATCG
ATGGCTTCCAAGGTTACGATGTAGCGCCGTCTGTCAGCACCTATTGAAAT
ACGCCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040632XLOC_040632Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064790-proteinTCONS_00064790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064790-exon-scaffold_423-1491911889:127854..128363TCONS_00064790-exon-scaffold_423-1491911889:127854..128363Clytia hemisphaericaexon
TCONS_00064790-exon-scaffold_423-1510915933:127854..128363TCONS_00064790-exon-scaffold_423-1510915933:127854..128363Clytia hemisphaericaexon
TCONS_00064790-exon-scaffold_423-1575043694:127854..128363TCONS_00064790-exon-scaffold_423-1575043694:127854..128363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:127854..128363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117866	0.574691	0.400363	1.43621	4.29163	2.51208	0	0.425598	0	0.123028	0	0	0.0783891	0	0.200785	0.0718244	4.51257	3.71833	0.250589	0.524446	5.35611	4.50243	4.45972	3.68594	4.55572	5.30822	0	0	0.130822	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top