TCONS_00064783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064783
Unique NameTCONS_00064783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064783 ID=TCONS_00064783|Name=TCONS_00064783|organism=Clytia hemisphaerica|type=transcript|length=642bp
TGAACCCTTGGTTGATTTCAAATGGTTACCGTTTCCCTCTCCTGACCCCG
ACAATCCTGGtcatttcaaaaagttcaaagaaGTTTCTGATCAACAACCA
ACTGAGGAACACTTACCTTCTAATGTTAACAACGTTCGTAAAGTGGCAGA
GTTGGAACAAGGCTGTAAAAGTTCGATGCTGACTGGCCAAAACGTCCGTG
AAATCGTCAAGTTTAAATCCTGCACCAAGCCACGGTGTATTTACAGCAAG
GCAAACCTTAGTTATAGTGAGCAAAGGGAATTAAGGAAGATAATTCGATC
TTATGATTACGTCTGCGGGTGTCTAATAACCCCAGATGTATCTTTCCTCG
CGGGTAAAGTGTTTACCAGGTTGGAAATGCATTGTCAAAGTCGGGTTGAA
TGGTCCTATTATAGTGCAAGCAAAGTTAACACTAGACAAGACTTGTGTTG
TCACTGCATTAAAAAAGACTCCAAAGTGGACAAGGAAGAGAAGAAATTAT
TCAAGACGGTACTCCCAATATGCGACGAGTGCAAAGGTAACGGAAAAAAG
TCATGAAGAGGGGTCCAATCCAAACCGCCAAAGCAAACAAACAGCGAGCT
CGTTGCAATAAAAAAGATACataaagagtttattttccattt
Run BLAST on NCBI

protein sequence of TCONS_00064783-protein

>TCONS_00064783-protein ID=TCONS_00064783-protein|Name=TCONS_00064783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
EPLVDFKWLPFPSPDPDNPGHFKKFKEVSDQQPTEEHLPSNVNNVRKVAE
LEQGCKSSMLTGQNVREIVKFKSCTKPRCIYSKANLSYSEQRELRKIIRS
YDYVCGCLITPDVSFLAGKVFTRLEMHCQSRVEWSYYSASKVNTRQDLCC
HCIKKDSKVDKEEKKLFKTVLPICDECKGNGKKS
Run BLAST on NCBI

transcript from alignment at scaffold_423:503808..504577-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064783 ID=TCONS_00064783|Name=TCONS_00064783|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at scaffold_423:503808..504577- (Clytia hemisphaerica)
TGAACCCTTGGTTGATTTCAAATGGTTACCGTTTCCCTCTCCTGACCCCG
ACAATCCTGGTCATTTCAAAAAGTTCAAAGAAGTTTCTGATCAACAACCA
ACTGAGGAACACTTACCTTCTAATGTTAACAACGTTCGTAAAGTGGCAGA
GTTGGAACAAGTGAGTCTCATAATATTGGTTGTTTTATCTGAAAAGTTTT
GTCTTGTTCTATTCTGTTTTATTCATAATTTCAGAATTTTGCATCCATCT
GTATGGAAAAATGTATTAAACGTTTTTATTTATTATAGGGCTGTAAAAGT
TCGATGCTGACTGGCCAAAACGTCCGTGAAATCGTCAAGTTTAAATCCTG
CACCAAGCCACGGTGTATTTACAGCAAGGCAAACCTTAGTTATAGTGAGC
AAAGGGAATTAAGGAAGATAATTCGATCTTATGATTACGTCTGCGGGTGT
CTAATAACCCCAGATGTATCTTTCCTCGCGGGTAAAGTGTTTACCAGGTT
GGAAATGCATTGTCAAAGTCGGGTTGAATGGTCCTATTATAGTGCAAGCA
AAGTTAACACTAGACAAGACTTGTGTTGTCACTGCATTAAAAAAGACTCC
AAAGTGGACAAGGAAGAGAAGAAATTATTCAAGACGGTACTCCCAATATG
CGACGAGTGCAAAGGTAACGGAAAAAAGTCATGAAGAGGGGTCCAATCCA
AACCGCCAAAGCAAACAAACAGCGAGCTCGTTGCAATAAAAAAGATACAT
AAAGAGTTTATTTTCCATTT

Coding sequence (CDS) from alignment at scaffold_423:503808..504577-

>TCONS_00064783 ID=TCONS_00064783|Name=TCONS_00064783|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_423:503808..504577- (Clytia hemisphaerica)
GGCTGTAAAAGTTCGATGCTGACTGGCCAAAACGTCCGTGAAATCGTCAA
GTTTAAATCCTGCACCAAGCCACGGTGTATTTACAGCAAGGCAAACCTTA
GTTATAGTGAGCAAAGGGAATTAAGGAAGATAATTCGATCTTATGATTAC
GTCTGCGGGTGTCTAATAACCCCAGATGTATCTTTCCTCGCGGGTAAAGT
GTTTACCAGGTTGGAAATGCATTGTCAAAGTCGGGTTGAATGGTCCTATT
ATAGTGCAAGCAAAGTTAACACTAGACAAGACTTGTGTTGTCACTGCATT
AAAAAAGACTCCAAAGTGGACAAGGAAGAGAAGAAATTATTCAAGACGGT
ACTCCCAATATGCGACGAGTGCAAAGGTAACGGAAAAAAGTCATGAGAAC
CCTTGGTTGATTTCAAATGGTTACCGTTTCCCTCTCCTGACCCCGACAAT
CCTGGTCATTTCAAAAAGTTCAAAGAAGTTTCTGATCAACAACCAACTGA
GGAACACTTACCTTCTAATGTTAACAACGTTCGTAAAGTGGCAGAGTTGG
AACAAGGCTGTAAAAGTTCGATGCTGACTGGCCAAAACGTCCGTGAAATC
GTCAAGTTTAAATCCTGCACCAAGCCACGGTGTATTTACAGCAAGGCAAA
CCTTAGTTATAGTGAGCAAAGGGAATTAAGGAAGATAATTCGATCTTATG
ATTACGTCTGCGGGTGTCTAATAACCCCAGATGTATCTTTCCTCGCGGGT
AAAGTGTTTACCAGGTTGGAAATGCATTGTCAAAGTCGGGTTGAATGGTC
CTATTATAGTGCAAGCAAAGTTAACACTAGACAAGACTTGTGTTGTCACT
GCATTAAAAAAGACTCCAAAGTGGACAAGGAAGAGAAGAAATTATTCAAG
ACGGTACTCCCAATATGCGACGAGTGCAAAGGTAACGGAAAAAAGTCATG
AGAACCCTTGGTTGATTTCAAATGGTTACCGTTTCCCTCTCCTGACCCCG
ACAATCCTGGTCATTTCAAAAAGTTCAAAGAAGTTTCTGATCAACAACCA
ACTGAGGAACACTTACCTTCTAATGTTAACAACGTTCGTAAAGTGGCAGA
GTTGGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040625XLOC_040625Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064783-proteinTCONS_00064783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064783-exon-scaffold_423-1575043694:504418..504577TCONS_00064783-exon-scaffold_423-1575043694:504418..504577Clytia hemisphaericaexon
TCONS_00064783-exon-scaffold_423-1575043694:503808..504289TCONS_00064783-exon-scaffold_423-1575043694:503808..504289Clytia hemisphaericaexon
TCONS_00064783-exon-scaffold_423-1510915933:504418..504577TCONS_00064783-exon-scaffold_423-1510915933:504418..504577Clytia hemisphaericaexon
TCONS_00064783-exon-scaffold_423-1510915933:503808..504289TCONS_00064783-exon-scaffold_423-1510915933:503808..504289Clytia hemisphaericaexon
TCONS_00064783-exon-scaffold_423-1491911889:504418..504577TCONS_00064783-exon-scaffold_423-1491911889:504418..504577Clytia hemisphaericaexon
TCONS_00064783-exon-scaffold_423-1491911889:503808..504289TCONS_00064783-exon-scaffold_423-1491911889:503808..504289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:503808..504577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101861	0	0	0	0.552468	0.174627	0.63204	0.394472	0.581932	0.342093	0.0830109	0.827319	0.326953	1.61026	0.697879	0.848788	0.26759	0.504351	0.0870984	0.1882	0.249719	0.579605	0.281834	0.427047	0	0.157022	0.449395	0.359705	0.272824	0.257568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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