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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=414bp ctcaGTTTAGTATCATTTTTATGTCTCTAGGGtaattatatattttgata aaagcgATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA TTCAAGTTTCcatcatcaacaacaacaactctGGTTGTGCATGCTGgtat gccgccaaacattgacgtcatcgtgtatgatttagcatgaacaataggac cgacagactcgacaaaaggaacaaacaataagacGACCCGAGAATCTTAC GATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGACGCTGT TTAAaaagcggggg Run BLAST on NCBI transcript from alignment at scaffold_423:204760..209428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=4669bp|location=Sequence derived from alignment at scaffold_423:204760..209428- (Clytia hemisphaerica) CTCAGTTTAGTATCATTTTTATGTCTCTAGGGTAATTATATATTTTGATA
AAAGCGATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA
AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT
TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA
TTCAAGTTTCCATCATCAACAACAACAACTCTGGTTGTGCATGCTGGTAA
GCTTCTATTCTTTGTTTGTTTCTCTGCTTTTTGCTTGTGTCCTTTCACTG
CACTGCTTAGCCTTTTTTAAGTTAGTTTTGTCTGTTTTTGTCTTAATCAA
TTTTTCCTTAAGTCCTTAATTTTCTATGTTTATAGTCCAATTTTCTAGCA
TTCATTAGTCTATGTTCATAGCCTAGCATTTCGTCCATTTTGATAGTTTT
CTTTTGTATTCAATTTTTAGTTTGAACTACCTGCAAAGATCGTTCCAAAC
AGGCACATTTTTGTTGTATACTCCCGTCGCCCTTCTCAGACCACAAACTT
TGAATTTTATAACACTTTGCGATAATTGAAATTCTCGAAATTAGGTATTT
TATGAAAGTACATTTTATAAGAGGTTGTAAAAAAGTGAACAAAACAATAT
TGAGTAATTGAGTAAATTTTAATCCTCCCCTTATGTTGCCTTTCTGATCA
TTGCCAAAAAAACTGCCTTGACATTGATAATCTGATGGCTGCTAAAACTG
TAAGTATTGCAAAACTTCTGACTTTCAAGAACTTGTGAAAGGGGGTATCT
CACTCTTTTCATCTTAAATACCGTAGATGAAAATGACTGTAATGCGTATA
GCGTGGTGGGTCAACTAAAATTCAGGCAAACTGGGTGGGCAATTTTAGAA
GATTCTGACACCCGCTACGATAAGTAAAAATCTCTTTAAAAATAAGACGA
CGAAGCAACTTTTTGGGAGTGTTTTCTCTCTTTTTTGGCCAAAAACTACC
ATAGTAATCAGTGGCATCTTTTCGCGCCCATTGTTTTTCGTCACCCCTTT
GAAAAACCTCCGCTCATGGGTGGTCAGCCCCCAGTTTTGCCATTGAAATT
CCAGCCCCCCCCCACAAACATATCAGGTCCCCCCAAATATTTGGCTGTAT
TTTAGCTCCTGGTTTTCATTTGCATTTTTTGGGTGTAACCCCCCCCCCCA
AAGTCAGGGGAGTTGACACTATGTGTCATGCATAATTATGTTTAAAATAT
CATTATTAAATTTGAAAATGTCGTCGTTGACAAAACAAAAGGGCCAATAC
ATCTTTCCCGTGATTTAAAGTTCTCAGAAATGGCCCGGGAAAATGTGTGC
TCCACCGTTGTGTATAAAATTGTTTGGGAGGTAAAAAAACGCATTTTTGC
TTGCGAGGGGCTAGGGGAAAGTGGGATTTCAGCCTCTAACTTTTGATAGC
GATCTTCTTTTGGCAAAATATTTTCAGGGTGGTATAATATATAATATCAT
GAATAGATTCAACATACTAAAATTTGAGGGGACTTTGTTCGACATAACTT
AAGAAAAGCTCAAAAAAAACATTTTTCCAAAAATTGGGAAATCGGGAAAC
CTTTTTTTCAGAAAATCGGGAAATTGGGAAAACTTTTTTCCAAAAATCAG
AAAAACAGGAAAAATTTTCTCAAAAATCCAAAATGCGTGAGAAATCAAAC
TTTTCAAAAATTACGTGAGACCATGTGGAAATGCATGAGTCTCACAAACA
ATGCGTGAGAGTTGGCACCTCTAATGTACGAATGTTGAATGTTTGAATTC
AAATGTTTGAATGTTTACATTGACTCGATAAACCTTTATTTCAGTGGGAT
CTGGTAGGATTTCAATTCATTCCAATAAGTTTGGAAGTATGATTTTGGAC
AAACTTGGCTTGATCAATTTATAATAGAACAACTTTACATTTCTATTTTA
GCAGATAATTTCTGAACCTTCTTATTTCCACACTGTTAACATCGATTTTG
GACCCAACAACTCTATTTTGGTACACAGGTAGTAAAAATCGAAATCGATT
TTGGACCCAATACCCCAATTATAGTACACAGGTAGTACATGACAAATTTT
TTTCTCAAACACCCACCCACCCCAGGATACATGCCACCTTCTGGTACACT
GGCCCCCCCCCTGGCTAGTCTTAAAGGGACATAAAAGAAGTAAAATGTAA
GCATTGCGCGAACCACGTGTAAAGAGAACAATTAAAATCACGTGTCCAAA
ACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATATTTTATTTGA
TTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATA
CAGTTTGTTTACAATTTTCGCAAGTGCTGTTATGTCCCTTTAAATTCTGA
CATTGCTTTGAGATGTGCGATTGCTTAAAAACTGAAAAAAGGTTCCTTTT
TTAGCTATTTTAGCAACCAACCGACCGACAGACCCATTTTTTAAAGCTTC
TAGCCAGGGGGCCACAATCGATTTTTGATAGATAATCACTTGATTTGATA
TATATCGATTACAATCAATATCCATAATCTATAGATGAAGAGAGCGCACC
TGATAAATTCAGGGGGGGGGTCAACATCCAGATACCAGACCCATAGCCGG
GTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAAAAGGTCAAAAGTCA
GGTTTTTGGGCTATGGGTTGGTATTATAAATGTTGACCCCCCCCTGATAA
ATTTTGGTCCCTCCGAAAAGGTGCACCTAGCTACTGTGAAGTCGGGTAAC
TTGAATCAGTGGAGGCTAACATGCATAGACCTCAAATGACTGACCAATCA
AAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTTTGCTCGCAGCTC
TACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTAAGGACCAGACA
GGTCATTCATTTGAGGGCTATGCAGCGTTAGCCTCCACTGATCAGTGAGG
ATCTCATCGCGATTCTCAGATTTACGGAAAATACCAGCTTTTTGCTGATT
TTTGCCTCGATTGCCCAAAACCCGTAACCTTTTTAGCATGAGGGAAGATA
ATAATTAGAGTTTTTGGCTTTGCCAAAAAAATGCCTAGTCAAAATTTTTT
CATCTTTGCAGGATCCATTCCCAACCTCAAAATAAATCTTTTTGTCAAGG
GGTTTGTTTGGCAAATTCTTCCTTCGAAGAATATCGATCACTTTCGTTTT
CCCCTGAAGACCGCAAGAGAAAAAATATTAGGGCCCGCGCTCTAGGCAGG
CGGCCTAGACTCGCTTTCATTTTGTATAATTTTATAATGACGTATAAGGT
AGCGTAATTCATGCAAAAATAATATGACAATCTTTTTGTTTTTATTTTCA
GGTATGCCGCCAAACATTGACGTCATCGTGTATGATTTAGCATGAACAAT
AGGACCGACAGACTCGACAAAAGGAACAAACAATAAGACGACCCGAGAAT
CTTACGATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGAC
GCTGTTTAAAAAGCGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064774-exon-scaffold_423-1575043694:209183..209428 | TCONS_00064774-exon-scaffold_423-1575043694:209183..209428 | Clytia hemisphaerica | exon |
TCONS_00064774-exon-scaffold_423-1575043694:204760..204927 | TCONS_00064774-exon-scaffold_423-1575043694:204760..204927 | Clytia hemisphaerica | exon |
TCONS_00064774-exon-scaffold_423-1510915933:209183..209428 | TCONS_00064774-exon-scaffold_423-1510915933:209183..209428 | Clytia hemisphaerica | exon |
TCONS_00064774-exon-scaffold_423-1510915933:204760..204927 | TCONS_00064774-exon-scaffold_423-1510915933:204760..204927 | Clytia hemisphaerica | exon |
TCONS_00064774-exon-scaffold_423-1491911889:209183..209428 | TCONS_00064774-exon-scaffold_423-1491911889:209183..209428 | Clytia hemisphaerica | exon |
TCONS_00064774-exon-scaffold_423-1491911889:204760..204927 | TCONS_00064774-exon-scaffold_423-1491911889:204760..204927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_423 | supercontig | scaffold_423:204760..209428 - |
Blast
The following BLAST results are available for this feature:
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