TCONS_00064774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064774
Unique NameTCONS_00064774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=414bp
ctcaGTTTAGTATCATTTTTATGTCTCTAGGGtaattatatattttgata
aaagcgATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA
AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT
TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA
TTCAAGTTTCcatcatcaacaacaacaactctGGTTGTGCATGCTGgtat
gccgccaaacattgacgtcatcgtgtatgatttagcatgaacaataggac
cgacagactcgacaaaaggaacaaacaataagacGACCCGAGAATCTTAC
GATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGACGCTGT
TTAAaaagcggggg
Run BLAST on NCBI

transcript from alignment at scaffold_423:204760..209428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=4669bp|location=Sequence derived from alignment at scaffold_423:204760..209428- (Clytia hemisphaerica)
CTCAGTTTAGTATCATTTTTATGTCTCTAGGGTAATTATATATTTTGATA AAAGCGATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA TTCAAGTTTCCATCATCAACAACAACAACTCTGGTTGTGCATGCTGGTAA GCTTCTATTCTTTGTTTGTTTCTCTGCTTTTTGCTTGTGTCCTTTCACTG CACTGCTTAGCCTTTTTTAAGTTAGTTTTGTCTGTTTTTGTCTTAATCAA TTTTTCCTTAAGTCCTTAATTTTCTATGTTTATAGTCCAATTTTCTAGCA TTCATTAGTCTATGTTCATAGCCTAGCATTTCGTCCATTTTGATAGTTTT CTTTTGTATTCAATTTTTAGTTTGAACTACCTGCAAAGATCGTTCCAAAC AGGCACATTTTTGTTGTATACTCCCGTCGCCCTTCTCAGACCACAAACTT TGAATTTTATAACACTTTGCGATAATTGAAATTCTCGAAATTAGGTATTT TATGAAAGTACATTTTATAAGAGGTTGTAAAAAAGTGAACAAAACAATAT TGAGTAATTGAGTAAATTTTAATCCTCCCCTTATGTTGCCTTTCTGATCA TTGCCAAAAAAACTGCCTTGACATTGATAATCTGATGGCTGCTAAAACTG TAAGTATTGCAAAACTTCTGACTTTCAAGAACTTGTGAAAGGGGGTATCT CACTCTTTTCATCTTAAATACCGTAGATGAAAATGACTGTAATGCGTATA GCGTGGTGGGTCAACTAAAATTCAGGCAAACTGGGTGGGCAATTTTAGAA GATTCTGACACCCGCTACGATAAGTAAAAATCTCTTTAAAAATAAGACGA CGAAGCAACTTTTTGGGAGTGTTTTCTCTCTTTTTTGGCCAAAAACTACC ATAGTAATCAGTGGCATCTTTTCGCGCCCATTGTTTTTCGTCACCCCTTT GAAAAACCTCCGCTCATGGGTGGTCAGCCCCCAGTTTTGCCATTGAAATT CCAGCCCCCCCCCACAAACATATCAGGTCCCCCCAAATATTTGGCTGTAT TTTAGCTCCTGGTTTTCATTTGCATTTTTTGGGTGTAACCCCCCCCCCCA AAGTCAGGGGAGTTGACACTATGTGTCATGCATAATTATGTTTAAAATAT CATTATTAAATTTGAAAATGTCGTCGTTGACAAAACAAAAGGGCCAATAC ATCTTTCCCGTGATTTAAAGTTCTCAGAAATGGCCCGGGAAAATGTGTGC TCCACCGTTGTGTATAAAATTGTTTGGGAGGTAAAAAAACGCATTTTTGC TTGCGAGGGGCTAGGGGAAAGTGGGATTTCAGCCTCTAACTTTTGATAGC GATCTTCTTTTGGCAAAATATTTTCAGGGTGGTATAATATATAATATCAT GAATAGATTCAACATACTAAAATTTGAGGGGACTTTGTTCGACATAACTT AAGAAAAGCTCAAAAAAAACATTTTTCCAAAAATTGGGAAATCGGGAAAC CTTTTTTTCAGAAAATCGGGAAATTGGGAAAACTTTTTTCCAAAAATCAG AAAAACAGGAAAAATTTTCTCAAAAATCCAAAATGCGTGAGAAATCAAAC TTTTCAAAAATTACGTGAGACCATGTGGAAATGCATGAGTCTCACAAACA ATGCGTGAGAGTTGGCACCTCTAATGTACGAATGTTGAATGTTTGAATTC AAATGTTTGAATGTTTACATTGACTCGATAAACCTTTATTTCAGTGGGAT CTGGTAGGATTTCAATTCATTCCAATAAGTTTGGAAGTATGATTTTGGAC AAACTTGGCTTGATCAATTTATAATAGAACAACTTTACATTTCTATTTTA GCAGATAATTTCTGAACCTTCTTATTTCCACACTGTTAACATCGATTTTG GACCCAACAACTCTATTTTGGTACACAGGTAGTAAAAATCGAAATCGATT TTGGACCCAATACCCCAATTATAGTACACAGGTAGTACATGACAAATTTT TTTCTCAAACACCCACCCACCCCAGGATACATGCCACCTTCTGGTACACT GGCCCCCCCCCTGGCTAGTCTTAAAGGGACATAAAAGAAGTAAAATGTAA GCATTGCGCGAACCACGTGTAAAGAGAACAATTAAAATCACGTGTCCAAA ACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATATTTTATTTGA TTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATA CAGTTTGTTTACAATTTTCGCAAGTGCTGTTATGTCCCTTTAAATTCTGA CATTGCTTTGAGATGTGCGATTGCTTAAAAACTGAAAAAAGGTTCCTTTT TTAGCTATTTTAGCAACCAACCGACCGACAGACCCATTTTTTAAAGCTTC TAGCCAGGGGGCCACAATCGATTTTTGATAGATAATCACTTGATTTGATA TATATCGATTACAATCAATATCCATAATCTATAGATGAAGAGAGCGCACC TGATAAATTCAGGGGGGGGGTCAACATCCAGATACCAGACCCATAGCCGG GTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNCCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAAAAGGTCAAAAGTCA GGTTTTTGGGCTATGGGTTGGTATTATAAATGTTGACCCCCCCCTGATAA ATTTTGGTCCCTCCGAAAAGGTGCACCTAGCTACTGTGAAGTCGGGTAAC TTGAATCAGTGGAGGCTAACATGCATAGACCTCAAATGACTGACCAATCA AAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTTTGCTCGCAGCTC TACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTAAGGACCAGACA GGTCATTCATTTGAGGGCTATGCAGCGTTAGCCTCCACTGATCAGTGAGG ATCTCATCGCGATTCTCAGATTTACGGAAAATACCAGCTTTTTGCTGATT TTTGCCTCGATTGCCCAAAACCCGTAACCTTTTTAGCATGAGGGAAGATA ATAATTAGAGTTTTTGGCTTTGCCAAAAAAATGCCTAGTCAAAATTTTTT CATCTTTGCAGGATCCATTCCCAACCTCAAAATAAATCTTTTTGTCAAGG GGTTTGTTTGGCAAATTCTTCCTTCGAAGAATATCGATCACTTTCGTTTT CCCCTGAAGACCGCAAGAGAAAAAATATTAGGGCCCGCGCTCTAGGCAGG CGGCCTAGACTCGCTTTCATTTTGTATAATTTTATAATGACGTATAAGGT AGCGTAATTCATGCAAAAATAATATGACAATCTTTTTGTTTTTATTTTCA GGTATGCCGCCAAACATTGACGTCATCGTGTATGATTTAGCATGAACAAT AGGACCGACAGACTCGACAAAAGGAACAAACAATAAGACGACCCGAGAAT CTTACGATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGAC GCTGTTTAAAAAGCGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040618XLOC_040618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064774-exon-scaffold_423-1575043694:209183..209428TCONS_00064774-exon-scaffold_423-1575043694:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1575043694:204760..204927TCONS_00064774-exon-scaffold_423-1575043694:204760..204927Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1510915933:209183..209428TCONS_00064774-exon-scaffold_423-1510915933:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1510915933:204760..204927TCONS_00064774-exon-scaffold_423-1510915933:204760..204927Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1491911889:209183..209428TCONS_00064774-exon-scaffold_423-1491911889:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1491911889:204760..204927TCONS_00064774-exon-scaffold_423-1491911889:204760..204927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:204760..209428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97464 2.64425 2.89895 2.11992 7.82234 7.29884 9.67011 11.022 8.96982 8.90121 10.5845 11.4494 5.34661 4.8154 3.1725 3.00229 4.10569 2.33718 1.79841 4.26521 4.27052 3.12932 1.58728 2.42774 7.00811 5.31338 2.96075 2.86522 3.63415 2.50555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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