TCONS_00064774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064774
Unique NameTCONS_00064774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=414bp
ctcaGTTTAGTATCATTTTTATGTCTCTAGGGtaattatatattttgata
aaagcgATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA
AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT
TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA
TTCAAGTTTCcatcatcaacaacaacaactctGGTTGTGCATGCTGgtat
gccgccaaacattgacgtcatcgtgtatgatttagcatgaacaataggac
cgacagactcgacaaaaggaacaaacaataagacGACCCGAGAATCTTAC
GATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGACGCTGT
TTAAaaagcggggg
Run BLAST on NCBI

transcript from alignment at scaffold_423:204760..209428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064774 ID=TCONS_00064774|Name=TCONS_00064774|organism=Clytia hemisphaerica|type=transcript|length=4669bp|location=Sequence derived from alignment at scaffold_423:204760..209428- (Clytia hemisphaerica)
CTCAGTTTAGTATCATTTTTATGTCTCTAGGGTAATTATATATTTTGATA
AAAGCGATGTGCAGTGAAACTTTCTTGCTCAATGAAATCAGTTTTTAATA
AGAGACGTATGAGAAAGGTTGTGTGTGTGTTTACACGTTTCAAAACGCCT
TTTCGACTCCAAGAAACTTGGTCGCCTAAGTTATGCTTGGTAAAGCATAA
TTCAAGTTTCCATCATCAACAACAACAACTCTGGTTGTGCATGCTGGTAA
GCTTCTATTCTTTGTTTGTTTCTCTGCTTTTTGCTTGTGTCCTTTCACTG
CACTGCTTAGCCTTTTTTAAGTTAGTTTTGTCTGTTTTTGTCTTAATCAA
TTTTTCCTTAAGTCCTTAATTTTCTATGTTTATAGTCCAATTTTCTAGCA
TTCATTAGTCTATGTTCATAGCCTAGCATTTCGTCCATTTTGATAGTTTT
CTTTTGTATTCAATTTTTAGTTTGAACTACCTGCAAAGATCGTTCCAAAC
AGGCACATTTTTGTTGTATACTCCCGTCGCCCTTCTCAGACCACAAACTT
TGAATTTTATAACACTTTGCGATAATTGAAATTCTCGAAATTAGGTATTT
TATGAAAGTACATTTTATAAGAGGTTGTAAAAAAGTGAACAAAACAATAT
TGAGTAATTGAGTAAATTTTAATCCTCCCCTTATGTTGCCTTTCTGATCA
TTGCCAAAAAAACTGCCTTGACATTGATAATCTGATGGCTGCTAAAACTG
TAAGTATTGCAAAACTTCTGACTTTCAAGAACTTGTGAAAGGGGGTATCT
CACTCTTTTCATCTTAAATACCGTAGATGAAAATGACTGTAATGCGTATA
GCGTGGTGGGTCAACTAAAATTCAGGCAAACTGGGTGGGCAATTTTAGAA
GATTCTGACACCCGCTACGATAAGTAAAAATCTCTTTAAAAATAAGACGA
CGAAGCAACTTTTTGGGAGTGTTTTCTCTCTTTTTTGGCCAAAAACTACC
ATAGTAATCAGTGGCATCTTTTCGCGCCCATTGTTTTTCGTCACCCCTTT
GAAAAACCTCCGCTCATGGGTGGTCAGCCCCCAGTTTTGCCATTGAAATT
CCAGCCCCCCCCCACAAACATATCAGGTCCCCCCAAATATTTGGCTGTAT
TTTAGCTCCTGGTTTTCATTTGCATTTTTTGGGTGTAACCCCCCCCCCCA
AAGTCAGGGGAGTTGACACTATGTGTCATGCATAATTATGTTTAAAATAT
CATTATTAAATTTGAAAATGTCGTCGTTGACAAAACAAAAGGGCCAATAC
ATCTTTCCCGTGATTTAAAGTTCTCAGAAATGGCCCGGGAAAATGTGTGC
TCCACCGTTGTGTATAAAATTGTTTGGGAGGTAAAAAAACGCATTTTTGC
TTGCGAGGGGCTAGGGGAAAGTGGGATTTCAGCCTCTAACTTTTGATAGC
GATCTTCTTTTGGCAAAATATTTTCAGGGTGGTATAATATATAATATCAT
GAATAGATTCAACATACTAAAATTTGAGGGGACTTTGTTCGACATAACTT
AAGAAAAGCTCAAAAAAAACATTTTTCCAAAAATTGGGAAATCGGGAAAC
CTTTTTTTCAGAAAATCGGGAAATTGGGAAAACTTTTTTCCAAAAATCAG
AAAAACAGGAAAAATTTTCTCAAAAATCCAAAATGCGTGAGAAATCAAAC
TTTTCAAAAATTACGTGAGACCATGTGGAAATGCATGAGTCTCACAAACA
ATGCGTGAGAGTTGGCACCTCTAATGTACGAATGTTGAATGTTTGAATTC
AAATGTTTGAATGTTTACATTGACTCGATAAACCTTTATTTCAGTGGGAT
CTGGTAGGATTTCAATTCATTCCAATAAGTTTGGAAGTATGATTTTGGAC
AAACTTGGCTTGATCAATTTATAATAGAACAACTTTACATTTCTATTTTA
GCAGATAATTTCTGAACCTTCTTATTTCCACACTGTTAACATCGATTTTG
GACCCAACAACTCTATTTTGGTACACAGGTAGTAAAAATCGAAATCGATT
TTGGACCCAATACCCCAATTATAGTACACAGGTAGTACATGACAAATTTT
TTTCTCAAACACCCACCCACCCCAGGATACATGCCACCTTCTGGTACACT
GGCCCCCCCCCTGGCTAGTCTTAAAGGGACATAAAAGAAGTAAAATGTAA
GCATTGCGCGAACCACGTGTAAAGAGAACAATTAAAATCACGTGTCCAAA
ACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATATTTTATTTGA
TTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATA
CAGTTTGTTTACAATTTTCGCAAGTGCTGTTATGTCCCTTTAAATTCTGA
CATTGCTTTGAGATGTGCGATTGCTTAAAAACTGAAAAAAGGTTCCTTTT
TTAGCTATTTTAGCAACCAACCGACCGACAGACCCATTTTTTAAAGCTTC
TAGCCAGGGGGCCACAATCGATTTTTGATAGATAATCACTTGATTTGATA
TATATCGATTACAATCAATATCCATAATCTATAGATGAAGAGAGCGCACC
TGATAAATTCAGGGGGGGGGTCAACATCCAGATACCAGACCCATAGCCGG
GTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAAAAGGTCAAAAGTCA
GGTTTTTGGGCTATGGGTTGGTATTATAAATGTTGACCCCCCCCTGATAA
ATTTTGGTCCCTCCGAAAAGGTGCACCTAGCTACTGTGAAGTCGGGTAAC
TTGAATCAGTGGAGGCTAACATGCATAGACCTCAAATGACTGACCAATCA
AAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTTTGCTCGCAGCTC
TACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTAAGGACCAGACA
GGTCATTCATTTGAGGGCTATGCAGCGTTAGCCTCCACTGATCAGTGAGG
ATCTCATCGCGATTCTCAGATTTACGGAAAATACCAGCTTTTTGCTGATT
TTTGCCTCGATTGCCCAAAACCCGTAACCTTTTTAGCATGAGGGAAGATA
ATAATTAGAGTTTTTGGCTTTGCCAAAAAAATGCCTAGTCAAAATTTTTT
CATCTTTGCAGGATCCATTCCCAACCTCAAAATAAATCTTTTTGTCAAGG
GGTTTGTTTGGCAAATTCTTCCTTCGAAGAATATCGATCACTTTCGTTTT
CCCCTGAAGACCGCAAGAGAAAAAATATTAGGGCCCGCGCTCTAGGCAGG
CGGCCTAGACTCGCTTTCATTTTGTATAATTTTATAATGACGTATAAGGT
AGCGTAATTCATGCAAAAATAATATGACAATCTTTTTGTTTTTATTTTCA
GGTATGCCGCCAAACATTGACGTCATCGTGTATGATTTAGCATGAACAAT
AGGACCGACAGACTCGACAAAAGGAACAAACAATAAGACGACCCGAGAAT
CTTACGATGAGGGCGTTTTGTCTCCGGCTGATATTACGCCCACAGAAGAC
GCTGTTTAAAAAGCGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040618XLOC_040618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064774-exon-scaffold_423-1575043694:209183..209428TCONS_00064774-exon-scaffold_423-1575043694:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1575043694:204760..204927TCONS_00064774-exon-scaffold_423-1575043694:204760..204927Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1510915933:209183..209428TCONS_00064774-exon-scaffold_423-1510915933:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1510915933:204760..204927TCONS_00064774-exon-scaffold_423-1510915933:204760..204927Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1491911889:209183..209428TCONS_00064774-exon-scaffold_423-1491911889:209183..209428Clytia hemisphaericaexon
TCONS_00064774-exon-scaffold_423-1491911889:204760..204927TCONS_00064774-exon-scaffold_423-1491911889:204760..204927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:204760..209428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97464	2.64425	2.89895	2.11992	7.82234	7.29884	9.67011	11.022	8.96982	8.90121	10.5845	11.4494	5.34661	4.8154	3.1725	3.00229	4.10569	2.33718	1.79841	4.26521	4.27052	3.12932	1.58728	2.42774	7.00811	5.31338	2.96075	2.86522	3.63415	2.50555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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