TCONS_00064763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064763
Unique NameTCONS_00064763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064763 ID=TCONS_00064763|Name=TCONS_00064763|organism=Clytia hemisphaerica|type=transcript|length=436bp
GCTAGATACCATACAGAAAatttcagatttaaaaaataacacAATGGCTG
GAAACAATCATCCATATTTTATGAAAGTTGCCAAAAacttcaatcaaaac
aaacggaaAAATGCGACACCCGATGATGGCGGAAACGCCCAAAATCACCA
AGATCACAAAAAACGATTTTTGCAAACACCGCCTGGTTATGAACAGAAAG
CAGTTTTAGATCAAAAGCGTCAAGAACTAATGCGAGAGgttCGACAATTA
CCCATTTTCTTTGGTAAAGGGGCGTTGATACAAGAGGTTGCGAGAAACGA
GACTGTTATTGTCATGTCGGAAACTGGCAGTGGAAAAACAACACAACTAC
CTCAATACATCCTGAACCAATATTCTAATAGAGGTATAGTATGCTGCACT
CAACCCAGAAGGGTGGCCGCCATTTCGGTGGCGNAA
Run BLAST on NCBI

transcript from alignment at scaffold_423:16710..18219-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064763 ID=TCONS_00064763|Name=TCONS_00064763|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at scaffold_423:16710..18219- (Clytia hemisphaerica)
GCTAGATACCATACAGAAAATTTCAGATTTAAAAAATAACACAATGGCTG
GAAACAATCATCCATATTTTATGAAAGTTGCCAAAAACTTCAATCAAAAC
AAACGGAAAAATGCGACACCCGATGATGGCGGAAACGCCCAAAATCACCA
AGATCACAAAAAACGATTTTTGCAAACACCGCCTGGTTATGAACAGAAAG
CAGTTTTAGATCAAAAGCGTCAAGAACTAATGCGAGAGGTATAGTTGAAA
TTTAATTTTTGCAAGCTCATTGCTGGGCAAAAGCAGTCTGAAATTGGGAA
GTTTTGCCTTGTAACACGCGTGTGTTGGTGGACAAATTATCTGAGTGGAC
GGGAGCTTTCGACGACGGAATTTGTCGTTATTTCTGAAATTTGTCGTTCT
TTTTGTCTATTTTTACTAAATGTAGGTTTCTTTAGATTAACTCTCTCCGG
GAAACTGTCGGTTCGTTGAAAGTAATACGCAATTAGTATCACTCCTGTCA
GATGCGATTCTCATTTTTTGTTTTGACTCATTTTTATTTTTTTAGGTTCG
ACAATTACCCATTTTCTTTGGTAAAGGGGCGTTGATACAAGAGGTTGCGA
GAAACGAGACTGTTATTGTCATGTCGGAAACTGGCAGTGGAAAAACAACA
CAACTACCTCAATACATCCTGAACCAATATTCTAATAGAGGTTTGTCTCA
GAAACACTCTCTTTACGGGATACTGCTAATAGACTTTCCAGGATTTTTTC
TCCAAAATCTTGTTGCAAAGAAATTTTTATCACTTTTTGAAGCAATAGAT
AAAGGCTTTTCAGAATACATTTTAAACGGTAATATCAGAGTAAAATCGAA
GTAATATTTTAATGAAATAGAGGCCCGTAATCATTTTATGTATCTGTGAA
AGAATGTATTGTTGTTGTATGAGCATATTAATGCATTCGGTTCTCAATCG
ACTCCTTCGCCACTATTTGCCGATGAGTCAACGTATGAAGGCATAAAATA
GACGCTTATATTTCATCGTTATCTTATGTTGATTGTTTAACAAGTTTGAT
GGCATCCGTACAGCTCAAAATATTTATCCAAGTAATGAAATATTTTGCTT
CACAATTTTCCTCAGGGTAATTTTAATACTCCTACCTTCTATAGTCGTTT
GGGAGAACACGACGGTCTTTTAAATAACTAGTTACTCCAGCAGAAACTTT
TGTTGATGATAATGTCATATAATTGATTTATCTTTTACAACACAGCTGTT
ACCTAGGGACAAGATCATTTATCCCATTTGTACTGGCTGAAGGAAAATAA
TGTATGCTGGAGTAATTTGTTTTTCTACAGACCGTCGCGTTCTCCCAAAC
GACTATAACTTTACTGACTTGACTATTTCTTGGAAAAAACGATTCAAATT
ATGTTTTTTGCTCAAAAAGACTTCGCAAATCATATCCTAACCATTTTTCG
TTCGAAGGTATAGTATGCTGCACTCAACCCAGAAGGGTGGCCGCCATTTC
GGTGGCGNAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040613XLOC_040613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064763-exon-scaffold_423-1575043694:17982..18219TCONS_00064763-exon-scaffold_423-1575043694:17982..18219Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1575043694:17530..17674TCONS_00064763-exon-scaffold_423-1575043694:17530..17674Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1575043694:16710..16762TCONS_00064763-exon-scaffold_423-1575043694:16710..16762Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1510915933:17982..18219TCONS_00064763-exon-scaffold_423-1510915933:17982..18219Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1510915933:17530..17674TCONS_00064763-exon-scaffold_423-1510915933:17530..17674Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1510915933:16710..16762TCONS_00064763-exon-scaffold_423-1510915933:16710..16762Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1491911889:17982..18219TCONS_00064763-exon-scaffold_423-1491911889:17982..18219Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1491911889:17530..17674TCONS_00064763-exon-scaffold_423-1491911889:17530..17674Clytia hemisphaericaexon
TCONS_00064763-exon-scaffold_423-1491911889:16710..16762TCONS_00064763-exon-scaffold_423-1491911889:16710..16762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:16710..18219 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.58154	1.1879	1.97334	2.44603	1.79454	2.7219	2.49562	2.23074	5.02888	5.90096	0	0	0	0	1.29644	0	0	2.74182	0	0	11.493	11.5695	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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