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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064753 ID=TCONS_00064753|Name=TCONS_00064753|organism=Clytia hemisphaerica|type=transcript|length=1020bp
aaaatgacgcgttctttagaaaaagtaacaaaattgttttattactggtt
aacgaccaaccaaatcaaataagagcttgtaaaaactccatcttgtCTCT
TCCCAACCAAGAAAGAAACTTTCGTTTAATAACTACGTAAAATGGAAAGA
GACGAATTTATGGCTACTGGAGATTTAATTTCAAAGTAAGCAAATCATTT
ACAAGAATAACAATGGACGAATCTCAAATACAACCGATACAACATCGCAC
CACCATTAAACCGAAGCATGACACATACAATGACGGGCTTTTTGGACtcg
GTCTTCTTCAATTCTACATCGCAGTGGTTTTAATCGTTTATGGCATATCT
GCGATTGCAGCATTTCGTACCTTTGCTGACGAGATGAGCAAAATATGTCT
CATCTTTGCATTATGGGTAATCATTACTGGAATCATATCGTGTTTATCAG
CCGAGTATCCAACGAAAAAACGattgaatcagcaaaattttggatttaat
tTGTTGAGCATTTCATTATGTATTGCTCTTTTTGCTGGCTTCTTTGCTGG
GATTATTGGTGGCATATATGATTATACGGATTGTATACGTACGCTTTCTG
ATTCATGCATGAAAATGCGCGCTACTGtcattgcaacattttcgattGTT
TTGGTATTCTGTCAATTCATTATAGCGCATGCGCTTTGCATTATATGTTT
CACGCGGGATTGCAATTGTCAAGAATGTCTGGATGATACAAAACCACCAC
ATCTAGATCTTATTTTGAAGAAGAAGGTCAACCAGATACTTCAAAGCTTG
CATTGGCGTAACAACCACTCAAACAGAAGTAACTGTGACGAAATGACAGA
AGTTGGAACTTCACAACCAACTCAAACAGATTCACAAGATCGATCACGAC
CATCTTAGGACCCTAGCTGAATATCGATTGTATAGACAGAACCAAAGTTA
CAAATTAACAAAACGAACTCAGACACAAGTCTATAAACAAGACCAACCAT
GGTCTTCTGATTGGAGGGGG Run BLAST on NCBI transcript from alignment at scaffold_423:338064..343919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064753 ID=TCONS_00064753|Name=TCONS_00064753|organism=Clytia hemisphaerica|type=transcript|length=5856bp|location=Sequence derived from alignment at scaffold_423:338064..343919+ (Clytia hemisphaerica)
aaaatgacgcgttctttagaaaaagtaacaaaattgttttattactggtt
aacgaccaaccaaatcaaataagagcttgtaaaaactccatcttgtCTCT
TCCCAACCAAGAAAGAAACTTTCGTTTAATAACTACGTAAAATGGAAAGA
GACGAATTTATGGCTACTGGAGATTTAATTTCAAAGTAAGCAAATCATTT
ACAAGAATAACAATGGACGAATCTCAAATACAACCGATACAACATCGCAC
CACCATTAAACCGAAGCATGACACATACAATGACGGGCTTTTTGGACtcg
gtgagattttttttctgcgTCATATTTAACAATTACTTTATTTAACTTGT
CTCGTGAAGCTACTTTAAAGTGGACTGGGCTCTAGGCCATCAGGGTCAAC
GTGCCAACTTGATGAGGCTAAATGAAGAACAACTTaaagaacaacttaag
aACAATACTAAGTCTGGAATGGCTTATGATTTTAACAATTTAAGGGTCAA
AGTAATGAAATTGgctaaaaagcctaaaaaccaCAGCCTTGCTCTAAAAA
TAAGAGCAggataaagaaaattgaagctGGAAGCGCCAAGACAATAAGAC
AAACCGAGCCTCAATTGAAATTTActgtttcttttttaaaaaaaagtgta
tatacGTGTGAGTGAGATTTGATTCTGAAAACTCGAATCCttgatttcat
attttcatctGCTTAAATAGCTTTCCACTTGAAATGATCTCTTTGAAACG
TTTTCAGGTCTTCTTCAATTCTACATCGCAGTGGTTTTAATCGTTTATGG
CATATCTGCGATTGCAGCATTTCGTACCTTTGCTGACGAGATGAGCAAAA
TATGTCTCATCTTTGCATTATGGGTAATCATTACTGGAATCATATCGTGT
TTATCAGCCGAGTATCCAACGAAAAAACGattgaatcagcaaaattttgg
atttaattTGTTGAGCATTTCATTATGTATTGCTCTTTTTGCTGGCTTCT
TTGCTGGGATTGTAAGTTTTACCACTTTATTATCTTACCAAAGCTTCCAT
ATTATTCAAAGGAGTTATAAGCTCTCTGGACAAATGGTTGCCCTTAATCC
TTTAAGTACCAATGACAAGCAActagacatgggctatataggagagCGAA
GCCCTCCGAAGTAATGCTCaatttgagttagaaatcgttatttttggtct
aactcgtaggaattggatttgggtttcatggtcaaggaaagtgagtcttt
ccagcgagatttaagccaaaaatccaaaaaaagaaataatttgacaaaaa
tttgacaatttgacacttttttaagattttgaccgttttttgaccatttt
tgatcAACGAGTGAATCAAGAACCTCCAAAATTGGCCCTGCTCTACTTTA
TTCTGTCCTCTAGCGAATTAATTTCAAGTTTactactgggcacctttcta
tcattcaggcaggtctgCACAGCTTCTATTTCCTTTTAGATCCAGAGNct
gggcacctttctatcattcaggcaggtctgCACAGCTTCTAACTCCTTTT
AGATCCAGAGATATAAGCCTTTCAAGTTTGAACTAACTCTGGGTTGGTTG
GCAGATGATGGGTATTGGATGTGAGGACTGGATCGAAAtaaaatttcctt
caaaaataaaagATCCTTTTTTATAGTTTTCCTCTGGAAACTTTCGAAAC
TGAAACTTTTTCCTACAATAAATCGTGATTTTTCGATTTATTAAAGagat
tactttttaaattttatgatcTTTTTAAcccttagaaaattttttgaagg
tgAAGAGCGGTACTCGTCATCCACGTTCCATTTAAATTACATAATATTTT
CTATTCATCTGTTTTAGATTGGTGGCATATATGATTATACGGATTGTATA
CGTACGCTTTCTGATTCATGCATGAAAATGCGCGCTACTGtcattgcaac
attttcgattGTTTTGGTATTCTGTCAATTCATTATAGCGCATGCGCTTT
GCATTATATGTTTCACGCGGGATTGCAATTGTCAAGAATGTCTGGATGAT
ACAAAACCACCACATCTAGATCGTAAGTTTATTAAAAATGTGCTGATTAA
AATCAATACACATGTGGCGTTTTGGTATAGCGGTCCTTGATCTTACTTAC
TGATGTTCGATTCCCATAAGCAGCGGCTCACTTGGTAAGACAATGAACCT
TCTATCGGGTTAACCTATACCATGCGAGGGGAATCGAGTAGCCatttcaa
ggtgctgacgggacgcttattgaaagcgtctatagttacAAAAATGGGTC
TCAAAACCTCCTGCAACTCAATCAAGTAAATGAAGATCTATCTATCTTCT
GATCTATCAGCCTTCGCGACAATAAAAGCTTGGTAAGAGGTTTAAAGGGT
TGAATGAGTTAAAATGAAATCGACCAATAAAGTGGCTTCAAAAGTCATTC
AACCTTGATGAATTCGACCCCAACTCATTTTATTAATAGTTGATTGCGGT
GCAGTGGGATTGATGTCtcttaggcgaaaataaaaaaatgtttccggaga
ccggccgggtgaaaaaaaaatttcttacccGGTCGCAGACtgtgggttca
tctatatggttcatcataaagaaaatcaagttgaccgttcaagctatcaa
acgtcatttggttagatattcccgcctgtaagttttgttcgttagtagtt
gatacattagaattcagggcttacttcatactgtttgtacataaaagtta
tctttaaagttctatttcaatgatcttaagttatcaaaaatagcaaaata
atcTTTTTCCGGCCGGCTGCATGGGAGCTTTTTTCcatcacccgcattcc
ggaagcactacatttttttattttcgccttatttcgctttttatgattct
gatagcactCGCCAAATGATTGTACAACACCCCTCAGTAAAAGTGGTGCA
TGGGgttctgggtacgagattgaaGGCTAGTTGTTATTATTATACCATTT
TCCAAATTGAAAGACTCACAAAAATACGGAGTGTACCCACTATATTGTGT
CACGATTTCTGCAGCACATTTTACTCTACTTTATATCTGTTTCAAATGTG
AGCTAATTCAGATTTTGCCTCATCATGGTTAGCCTTCCAAATATCCTTAT
TGGGCTATTtgagaataaaatttctttcattttttagggTTTTACTGAGC
ACCCTCGATTCgcaacctcattttactgaccaccttATTTCTTTGTCTAC
TCTGGATTTTAGCACTTGAAAAAGCAGACTCCCGtggacttttttatttt
ccaaaccaccctggacgtcacacgtCCTCAACATAGAGGGCACatactat
ttctggaatagcccaattctCCTTTTTTAGTTATTTTGAAGAAGAAGGTC
AACCAGATACTTCAAAGCTTGCATTGGCGTAACAACCACTCCAACAGAAG
TGATTCTGACGAAATGACAGAAGTTGGAACTTCACAACCAACTCAAACAG
ATTCACAAGATCGATCACGACCATCTTAGGACCCTAGCTGAATATCGATT
GTATAGACAGAACCAAAGTTACAAATTAACAAAACGAACTCAGACACAAG
TCTATAAACAAGACCAACCATGGTCTTCTGATTGGAGGCATTCCTTAAAG
ATCAGCAATcttttttgacgtgtttttgcaCATTTTggaaagtgaatttt
gacttttaaaagccAAAACCAAAACTCCAAAACCACTCAACCAAATTTAA
AGAGTTAGTTAGAGTTAAAAGTTAGACCATCCTCTATCTAACAAAAGTAT
CTATTTGGTCTCAAGAAGCCAACAAGTTTTCAGATGGCTCTctgtaatta
aatttttttctacgttTCTTCCTTTTAATTTGATTGGTACGGTCTTTATC
TAAGATCTCCGGTGATTGTCATGGTTGCTATTTAGTTTGTTGAGTACGTg
ctgaatacaccttttcaaccgtagccNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTTTCCTGTCTTTGATCAACatggtcatac
atttgctgttttgcacgctcgttttcaacacgttacttttcgctgggcct
tcacgcccaacgggcttcttgtttattTTCCAAACCACCCTCAACATAGA
GggcacagactatttctggaattcTCTCCAATTCTCCTTTTTTAGTTATT
TTGAAGAAGAAGGTCAACCAGATACTTCAAAGCTTGCATTGGCGTAACAA
CCACTCAAACAGAAGTAACTGTGACGAAATGACAGAAGTTGGAACTTCAC
AACCAACTCAAACAGATTCACAAGATCGATCACGACCATCTTAGGACCCT
AGCTGAATATCGATTGTATAGACAGAACCAAAGTTACAAATTAACAAAAC
GAACTCAGACACAAGTCTATAAACAAGACCAACCATGGTCTTCTGATTGG
AGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064753-exon-scaffold_423-1491911889:338064..338363 | TCONS_00064753-exon-scaffold_423-1491911889:338064..338363 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1510915933:338064..338363 | TCONS_00064753-exon-scaffold_423-1510915933:338064..338363 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1575043694:338064..338363 | TCONS_00064753-exon-scaffold_423-1575043694:338064..338363 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1491911889:338821..339074 | TCONS_00064753-exon-scaffold_423-1491911889:338821..339074 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1510915933:338821..339074 | TCONS_00064753-exon-scaffold_423-1510915933:338821..339074 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1575043694:338821..339074 | TCONS_00064753-exon-scaffold_423-1575043694:338821..339074 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1491911889:339931..340135 | TCONS_00064753-exon-scaffold_423-1491911889:339931..340135 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1510915933:339931..340135 | TCONS_00064753-exon-scaffold_423-1510915933:339931..340135 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1575043694:339931..340135 | TCONS_00064753-exon-scaffold_423-1575043694:339931..340135 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1491911889:343659..343919 | TCONS_00064753-exon-scaffold_423-1491911889:343659..343919 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1510915933:343659..343919 | TCONS_00064753-exon-scaffold_423-1510915933:343659..343919 | Clytia hemisphaerica | exon |
| TCONS_00064753-exon-scaffold_423-1575043694:343659..343919 | TCONS_00064753-exon-scaffold_423-1575043694:343659..343919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:338064..343919 + |
Blast
The following BLAST results are available for this feature:
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