XLOC_040608 (gene) - C. hemisphaerica

Overview
NameXLOC_040608
Unique NameXLOC_040608
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_423:338064..343919+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040608 ID=XLOC_040608|Name=XLOC_040608|organism=Clytia hemisphaerica|type=gene|length=5856bp|location=Sequence derived from alignment at scaffold_423:338064..343919+ (Clytia hemisphaerica)
aaaatgacgcgttctttagaaaaagtaacaaaattgttttattactggtt
aacgaccaaccaaatcaaataagagcttgtaaaaactccatcttgtCTCT
TCCCAACCAAGAAAGAAACTTTCGTTTAATAACTACGTAAAATGGAAAGA
GACGAATTTATGGCTACTGGAGATTTAATTTCAAAGTAAGCAAATCATTT
ACAAGAATAACAATGGACGAATCTCAAATACAACCGATACAACATCGCAC
CACCATTAAACCGAAGCATGACACATACAATGACGGGCTTTTTGGACtcg
gtgagattttttttctgcgTCATATTTAACAATTACTTTATTTAACTTGT
CTCGTGAAGCTACTTTAAAGTGGACTGGGCTCTAGGCCATCAGGGTCAAC
GTGCCAACTTGATGAGGCTAAATGAAGAACAACTTaaagaacaacttaag
aACAATACTAAGTCTGGAATGGCTTATGATTTTAACAATTTAAGGGTCAA
AGTAATGAAATTGgctaaaaagcctaaaaaccaCAGCCTTGCTCTAAAAA
TAAGAGCAggataaagaaaattgaagctGGAAGCGCCAAGACAATAAGAC
AAACCGAGCCTCAATTGAAATTTActgtttcttttttaaaaaaaagtgta
tatacGTGTGAGTGAGATTTGATTCTGAAAACTCGAATCCttgatttcat
attttcatctGCTTAAATAGCTTTCCACTTGAAATGATCTCTTTGAAACG
TTTTCAGGTCTTCTTCAATTCTACATCGCAGTGGTTTTAATCGTTTATGG
CATATCTGCGATTGCAGCATTTCGTACCTTTGCTGACGAGATGAGCAAAA
TATGTCTCATCTTTGCATTATGGGTAATCATTACTGGAATCATATCGTGT
TTATCAGCCGAGTATCCAACGAAAAAACGattgaatcagcaaaattttgg
atttaattTGTTGAGCATTTCATTATGTATTGCTCTTTTTGCTGGCTTCT
TTGCTGGGATTGTAAGTTTTACCACTTTATTATCTTACCAAAGCTTCCAT
ATTATTCAAAGGAGTTATAAGCTCTCTGGACAAATGGTTGCCCTTAATCC
TTTAAGTACCAATGACAAGCAActagacatgggctatataggagagCGAA
GCCCTCCGAAGTAATGCTCaatttgagttagaaatcgttatttttggtct
aactcgtaggaattggatttgggtttcatggtcaaggaaagtgagtcttt
ccagcgagatttaagccaaaaatccaaaaaaagaaataatttgacaaaaa
tttgacaatttgacacttttttaagattttgaccgttttttgaccatttt
tgatcAACGAGTGAATCAAGAACCTCCAAAATTGGCCCTGCTCTACTTTA
TTCTGTCCTCTAGCGAATTAATTTCAAGTTTactactgggcacctttcta
tcattcaggcaggtctgCACAGCTTCTATTTCCTTTTAGATCCAGAGNct
gggcacctttctatcattcaggcaggtctgCACAGCTTCTAACTCCTTTT
AGATCCAGAGATATAAGCCTTTCAAGTTTGAACTAACTCTGGGTTGGTTG
GCAGATGATGGGTATTGGATGTGAGGACTGGATCGAAAtaaaatttcctt
caaaaataaaagATCCTTTTTTATAGTTTTCCTCTGGAAACTTTCGAAAC
TGAAACTTTTTCCTACAATAAATCGTGATTTTTCGATTTATTAAAGagat
tactttttaaattttatgatcTTTTTAAcccttagaaaattttttgaagg
tgAAGAGCGGTACTCGTCATCCACGTTCCATTTAAATTACATAATATTTT
CTATTCATCTGTTTTAGATTGGTGGCATATATGATTATACGGATTGTATA
CGTACGCTTTCTGATTCATGCATGAAAATGCGCGCTACTGtcattgcaac
attttcgattGTTTTGGTATTCTGTCAATTCATTATAGCGCATGCGCTTT
GCATTATATGTTTCACGCGGGATTGCAATTGTCAAGAATGTCTGGATGAT
ACAAAACCACCACATCTAGATCGTAAGTTTATTAAAAATGTGCTGATTAA
AATCAATACACATGTGGCGTTTTGGTATAGCGGTCCTTGATCTTACTTAC
TGATGTTCGATTCCCATAAGCAGCGGCTCACTTGGTAAGACAATGAACCT
TCTATCGGGTTAACCTATACCATGCGAGGGGAATCGAGTAGCCatttcaa
ggtgctgacgggacgcttattgaaagcgtctatagttacAAAAATGGGTC
TCAAAACCTCCTGCAACTCAATCAAGTAAATGAAGATCTATCTATCTTCT
GATCTATCAGCCTTCGCGACAATAAAAGCTTGGTAAGAGGTTTAAAGGGT
TGAATGAGTTAAAATGAAATCGACCAATAAAGTGGCTTCAAAAGTCATTC
AACCTTGATGAATTCGACCCCAACTCATTTTATTAATAGTTGATTGCGGT
GCAGTGGGATTGATGTCtcttaggcgaaaataaaaaaatgtttccggaga
ccggccgggtgaaaaaaaaatttcttacccGGTCGCAGACtgtgggttca
tctatatggttcatcataaagaaaatcaagttgaccgttcaagctatcaa
acgtcatttggttagatattcccgcctgtaagttttgttcgttagtagtt
gatacattagaattcagggcttacttcatactgtttgtacataaaagtta
tctttaaagttctatttcaatgatcttaagttatcaaaaatagcaaaata
atcTTTTTCCGGCCGGCTGCATGGGAGCTTTTTTCcatcacccgcattcc
ggaagcactacatttttttattttcgccttatttcgctttttatgattct
gatagcactCGCCAAATGATTGTACAACACCCCTCAGTAAAAGTGGTGCA
TGGGgttctgggtacgagattgaaGGCTAGTTGTTATTATTATACCATTT
TCCAAATTGAAAGACTCACAAAAATACGGAGTGTACCCACTATATTGTGT
CACGATTTCTGCAGCACATTTTACTCTACTTTATATCTGTTTCAAATGTG
AGCTAATTCAGATTTTGCCTCATCATGGTTAGCCTTCCAAATATCCTTAT
TGGGCTATTtgagaataaaatttctttcattttttagggTTTTACTGAGC
ACCCTCGATTCgcaacctcattttactgaccaccttATTTCTTTGTCTAC
TCTGGATTTTAGCACTTGAAAAAGCAGACTCCCGtggacttttttatttt
ccaaaccaccctggacgtcacacgtCCTCAACATAGAGGGCACatactat
ttctggaatagcccaattctCCTTTTTTAGTTATTTTGAAGAAGAAGGTC
AACCAGATACTTCAAAGCTTGCATTGGCGTAACAACCACTCCAACAGAAG
TGATTCTGACGAAATGACAGAAGTTGGAACTTCACAACCAACTCAAACAG
ATTCACAAGATCGATCACGACCATCTTAGGACCCTAGCTGAATATCGATT
GTATAGACAGAACCAAAGTTACAAATTAACAAAACGAACTCAGACACAAG
TCTATAAACAAGACCAACCATGGTCTTCTGATTGGAGGCATTCCTTAAAG
ATCAGCAATcttttttgacgtgtttttgcaCATTTTggaaagtgaatttt
gacttttaaaagccAAAACCAAAACTCCAAAACCACTCAACCAAATTTAA
AGAGTTAGTTAGAGTTAAAAGTTAGACCATCCTCTATCTAACAAAAGTAT
CTATTTGGTCTCAAGAAGCCAACAAGTTTTCAGATGGCTCTctgtaatta
aatttttttctacgttTCTTCCTTTTAATTTGATTGGTACGGTCTTTATC
TAAGATCTCCGGTGATTGTCATGGTTGCTATTTAGTTTGTTGAGTACGTg
ctgaatacaccttttcaaccgtagccNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTTTTTCCTGTCTTTGATCAACatggtcatac
atttgctgttttgcacgctcgttttcaacacgttacttttcgctgggcct
tcacgcccaacgggcttcttgtttattTTCCAAACCACCCTCAACATAGA
GggcacagactatttctggaattcTCTCCAATTCTCCTTTTTTAGTTATT
TTGAAGAAGAAGGTCAACCAGATACTTCAAAGCTTGCATTGGCGTAACAA
CCACTCAAACAGAAGTAACTGTGACGAAATGACAGAAGTTGGAACTTCAC
AACCAACTCAAACAGATTCACAAGATCGATCACGACCATCTTAGGACCCT
AGCTGAATATCGATTGTATAGACAGAACCAAAGTTACAAATTAACAAAAC
GAACTCAGACACAAGTCTATAAACAAGACCAACCATGGTCTTCTGATTGG
AGGGGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064750TCONS_00064750Clytia hemisphaericatranscript
TCONS_00064751TCONS_00064751Clytia hemisphaericatranscript
TCONS_00064752TCONS_00064752Clytia hemisphaericatranscript
TCONS_00064753TCONS_00064753Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064752-proteinTCONS_00064752-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:338064..343919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.67	0.91	0.67	0.43	0.48	0.3	0.94	0.77	0.62	2.41	0.4	0.19	15.56	19.27	5.32	6.24	2.09	2.89	3.13	4.25	3.82	3.25	4.92	10.3	11.64	13.8	2	2.07	0.25	0.19