TCONS_00064736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064736
Unique NameTCONS_00064736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064736 ID=TCONS_00064736|Name=TCONS_00064736|organism=Clytia hemisphaerica|type=transcript|length=2212bp
AACTGGTTAATAAGGATGAATATTTAACATGACATCATGTCGTCTACTGT
GGAGAAAATTCCTCTCACCAATGGTGCTAACGAACGTAACCATAGCAACA
GTAATAACAATACAGCTAGTGAGAAGACAGAAAGGGAGACGTGGGGACGA
AAGTTGgaatttattttgacatgtgtgGGCTATTGTGTCGGTCTTGGTAA
TGTTTGGAGGTTTCCATACTTGGTGTTCAGTAATGGAGGAGGAGCTTTCA
TTGTCCCCTACTTCATCATGTTGTTCGTCTGTGGAATGCCATTGTTCTTA
ATGGAGCTGGCTTTGGGTCAGTACTTTCGTCTTGGACCTGTCACGACCTG
GAATCTTGCATGTCCTCTTGGAAAAGGGATAGGGTACGCAATGATCGCCG
TCTCCTTCTTATGTACCATCTACTACAACGTCATTATAGCTTGGGTGCTC
TACTTTCTGTACGCATCCATGAAACCACAAGTTCCTTGGAAAAGTTGCTT
CAATTCGTGGAATACACCTAATTGTAGAGAAGATAACCATAAACCGAagc
TTGAGTGGTCATGCCCTTCCAGCAATGGTACTTGGTACAATTACACAGTG
GCCACACTTCCCAAGAACTCGTCATTGTGCAACAAATTCCTGGTCCACGA
GCCAACCTCGCCCAGTATTGAATTCTGGGAACGTCGTGTTCTGCAAATTA
CAAATGGACTGGATGAAAGCGGTGATGTTCAGTATGAATTGTTGATTTGT
TTGGTGGTTGCTTGGATACTTGTTTTCGTGTGTTTGTTCAAAGGAATCAA
AACATCCGGCAAGGTGGTATATTTTACAGCAACATTCCCTTACATAGTAA
TGTTTATTCTCCTTATTCGTGGCGCCATTTTGGAAGGAGCATCCGAGGGT
ATCAAATACTACCTGATGCCTTCATTTGATAAACTGAAAGATGCCAAAGT
GTGGGTGGCTGCTGCAACTCAAATCTTCTACTCCCTTGGGATTGGTTTTG
GTTCGTTGATCGCTTTTGGAAGTTACAACAAAGTCAATAATAATATTGTG
AGAGATGCGATCGCTCTTTCATTGACGAATTGTATGACGTCAGTGTTCGC
TGGTTTTGTTGTATTCAGTGTTCTTGGTCACATGGCGCATAAAAGCAAGC
TCTCCATACAAAAAGTCGCAACCCAAGgACCTGGCTTGATATTCGTGGTT
TATCCAGAAGGCCTAGCCCAGATGCCAGTCTCCACTCTGTGGGGCGTCTT
ATTTTTCTTCATGATCCTGATGATCGGGTTAGATACGCAGTTCGCCATGC
TAGAGGCTGTCATTGTTGGCCTGTCTGATGAATACAAAGTACTGCGTCAG
CATAAAACTACTTTCATTTTCGTCATTTGTTTATTAGCTTTGTTATTTGG
CATCTCCATGGTTACTCAGggtggtatgtacatcttcaacattttcaact
ggCAATCAGGGGGCGTTTCCCTTCTCATTCTGGCTTTCATAGAAGTTTGT
GCTATATCTTACGGATACGGAGCCGATAGGTTTGAAAAAGACTTGGAGTT
AATCCTGGGAAGAAAACCGTCCCGTTGGTGGAAGATTTGTTGGAAATATC
TTTCGCCTTTTGTGATCTTGGCAACGTTAATTTCAAGCTTGGTGCAATGG
AAGGGAATCAGTTACAATGGGATTAGTTATCCAGTGTACGGTGAAGTTAT
CGGATGGTTCCTCGCCCTCACGTCAGTCATTTGGATTCCGCTTGTCGCTc
tctataaaatgaaattctctgCTTCTGGTTCAATATGTAATCGTTTACGT
CATCTTTTAACACCCAATATGGCGGAATTGCGTCAGGTTGCCCTGGACAA
TGGTTTGAATACAAGTTTTGATGCAAATGCTTGAAGTCTTTTGAATGCTA
GAGACGTAGTGCGATTCGGAAATACCACCTAAAACTAACTACTATAAAAG
GCAATGTTTTTCAAGCCTGTCGTCGATAACTAGCTACTATGTAAGACAAT
ACTCAAGCAAAAACCAAGCTAAATACCGTTTATGAGAGACTTTTCTGGTC
ACGTAGACCAAAATGAAGACACGTATCGATCACGTCATCGAAAGTTAAAA
TATTCCTACGCATATTATAAGGAccagttttttttttggacaatgccgtg
ttaataaaaattttgtttgtcATTATCCTTTGCGTAGTTTACTAATTCCT
CGAGATTCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_423:215132..225163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064736 ID=TCONS_00064736|Name=TCONS_00064736|organism=Clytia hemisphaerica|type=transcript|length=10032bp|location=Sequence derived from alignment at scaffold_423:215132..225163+ (Clytia hemisphaerica)
AACTGGTTAATAAGGATGAATATTTAACATGGTAAGGTATTGGAGCATGA
GTATTGATTTGTGGTATATTTATTAATCGCTCATGGGAAATCTGTAACAG
TTAGTCTGTCTTTTGTGTAGGGGAATATAATAGCTGTAGTCTTAAGTATG
AACTCTGGTATGTTTACAGGTAAAAACTGGCTAAGAACTCAACTCGGCCT
GTCTTCCACTTTTGCTTTGAACATCATACCTTATTATGAAAATTTGACCA
CTTCTTGGAATTTGATGAGTCAGCAATAAGCAATCAACTGATATCTTTTT
TTCCAGACATCATGTCGTCTACTGTGGAGAAAATTCCTCTCACCAATGGT
GCTAACGAACGTAACCATAGCAACAGTAATAACAATACAGCTAGTGAGAA
GACAGAAAGGGAGACGTGGGGACGAAAGTTGgaatttattttgacatgtg
tgGGCTATTGTGTCGGTCTTGGTAATGTTTGGAGGTaatttttcgaagtt
tttttccttcttcaCTAATAAAATTGAAAGGTTTTGATCACATAGAGGAG
ATTtggctttttcaaaaatttcttgtcGCTATACctggtgcgccacaaaa
aagtttctcttctttgaaacaaattttttcgaaatctaaaaattttaaaa
gaaccatttctatttcattggaaagaaagaaagatagacttaaattttga
tggattatttattaaaatcgattcattaaatcaaaagttatgttcaattg
aatagaaaagttactttcgaaaagtgctgaaaaacgttaaaaattaacct
atcaaatcaaacagaagcatgattacatgatacatcagtattttcgtttc
agtcattaaagatgataattagctgtctaaatgaccttagTTGTATAAaa
gaaggttgaatttcaatgaaatgaagaaaatacGTCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTATATCACAGGTGTTTGCCATAAGCAAAAGTTGGTAATGCAAAGTCTCA
CAAAATCGCATTTAgcaaacgcaaaaaaaaaattccataatggcggcatc
TTGCGAGAGCAATCAGAataccaaaataaacaaatttcaaaggcTCATTG
TTAGTGTTTGAGTGAAGctatcatcaaaaaataaaaataaaacaaacctt
taacctttcaataatccaaataaacaaaatatgtCAAATGAATTGATGTT
TAAGTTCGAAAACAAGCACCATTTCCACCATacacttttagagcaaaaag
caGTATTTCGCTGAAATCTGCTGCTCTTCCCAGGCAAATAATTTCTCAGA
ATGTCAGAGAGTCTGGTGCTGAATATATAGTTTAGTGGGTCAAGCTTGTT
TTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCTGAGACGG
GGGTCATAAACGATCTTTGTCTATTTTGAAGTCGTACAATCTTTTACTTC
TCAAAACCATTTAGATTCAGGTTTTATATATAATAACAAAGATctttaac
caaaatttgtttCATTAAAGTTATTTTCTTTCAGCGAAATAAGCCTTTAG
TAAATATTTAAACCCCCGGTTTTATTTAGATATTTACAATGTGATTTTAT
AGCGGGAGTTGGAAACCGGCTAGATTGTgtgatctgattggctaaagGAG
CAAACGCGGGACTCGGCCTAGGACTTTTTACCCGCGTTTTAAACGCGTTT
ACGGCAATGTTTATTCtttacactttcgttttcaaaatctgttGAACATG
GATTTTGGCTTGTGACGATAACCTCGCGTAACATCTGtgtgatatgcacc
actggagagtctccCGTGAACTTTTCCACCCAATATGTCACTTaaagaat
agaaaaagtgaggtattgggtggaaatttttgaaaattctcggACGCCTC
CAGAGGTGCATGAATTGGCTATAGCTCGTTTCTAGACTAGTGTTTCTTTC
ATAGAATAAAGTATTGGGATTTGTAGAAAATAACAGGTACCTTTTCACTA
TTTTACTCTGCAGGTTTCCATACTTGGTGTTCAGTAATGGAGGAGGAGCT
TTCATTGTCCCCTACTTCATCATGTTGTTCGTCTGTGGAATGCCATTGTT
CTTAATGGAGCTGGCTTTGGGTCAGTACTTTCGTCTTGGACCTGTCACGA
CCTGGAATCTTGCATGTCCTCTTGGAAAAGGTATGAGATATTATTTTTAC
AGATATGCTTTTTTCAAACGTGCCTAAATCGATGACTTGGTTTCTGACAG
CTCTAACAAACTGTTGGAAACCTAGACTTCTTGAAAGTTACGTTTGAGTG
AAGTTTTACCTTAATGAATCGTTAACGTCTTGATAATGCGGATACATCTT
AAGAGCCCAGGAAAAGCAAGTGgtgttaaaaaatgtttgttaTAATTCAA
CATTCGCTTTCGTTTTATAACTTCAGTACCAAGCACTAGCttgaaatgaa
tgaatgatATATACCAACCTCCACCCACCTTGAACTCTgttgtactaact
tttttgagatttgaaattagacaccaccacatAGTTATGGGTCAGTACCC
TGCGGCTGTATCCCCTTCCTCATTATAAACATCAATACTTTCTGCTTTCA
GGGATAGGGTACGCAATGATCGCCGTCTCCTTCTTATGTACCATCTACTA
CAACGTCATTATAGCTTGGGTGCTCTACTTTCTGTACGCATCCATGAAAC
CACAAGTTCCTTGGAAAAGTTGCTTCAATTCGTGGAATACACCTAATTGT
AGAGAAGATAACCATAAACCGAGTTAGTGTTTGCCAGAAACTGTTAGAGT
TAAGATACACAAATCAACTACATATCACATTTCTCACGATAGCTCCTCAT
TTTCAGCTTAACAGCTTGATTTTGTTCACTAAAGTTCCTTGGTTTACTAT
AAAATTGTTAtcaattttagatattttaacaaTGTTTTCCTTTATCCTGG
GACTTACGCGTTATATATATTAGTTTTCTTGACTGATCTTGACCTGTCCA
TCCTGAATTCCCACACTTcttaatttacttttattttcaaagagcTTGAG
TGGTCATGCCCTTCCAGCAATGGTACTTGGTACAATTACACAGTGGCCAC
ACTTCCCAAGAACTCGTCATTGTGCAACAAATTCCTGGTCCACGAGCCAA
CCTCGCCCAGTATTGAATTCTGGGAACGTCGTGTTCTGCAAATTACAAAT
GGACTGGATGAAAGCGGTGATGTTCAGTATGAATTGTTGATTTGTTTGGT
GGTTGCTTGGATACTTGTTTTCGTGTGTTTGTTCAAAGGAATCAAAACAT
CCGGCAAGGTATTTTAGCCTATTTTATCCACTTTGTGCAAAATCGCGTCG
TTAATACGTCGAAATATCCTAAAGCCACGTATACTTTTTGcaatagtttt
attttattctttagGTTTCAAAACTTGATAAAGCGGGGGGGGTTAGAATA
AAAATTTCCTGGGTGGgtgtaaaatttttgaaaaggagactaatacagca
gaataattataaagaaatatatttCATCAAATTGTTTGGTTTTTTATACC
TATTTATCGCTATTTCCTCTGCAATGAAATACACACCTATGAGAATTAAA
TCGCTGATTCACTGTGATAATCATTGAGTCGGGATTTGAGACAGAAATAC
TGGGTCGTCCCAGCTGTGCTCCTCCgtcaaaaagaaagtaaaaatacTTG
GAAAATATAATAATATGTGCGCTCTTTCTCCTTTTCAGGTGGTATATTTT
ACAGCAACATTCCCTTACATAGTAATGTTTATTCTCCTTATTCGTGGCGC
CATTTTNGTACGCATCCATGAAACCACAAGTTCCTTGGAAAAGTTGCTTC
AATTCGTGGAATACACCTAATTGTAGAGAAGATAACCATAAACCGAGTTA
GTGTTTGCCAGAAACTGTTAGAGTTAAGATACACAAATCAACTACATATC
ACATTTCTCACGATAGCTCCTCATTTTCAGCTTAACAGCTTGATTTTGTT
CACTAAAGTTCCTTGGTTTACTATAAAATTGTTAtcaattttagatattt
taacaaTGTTTTCCTTTATCCTGGGACTTACGCGTTATATATATTAGTTT
TCTTGACTGATCTTGACCTGTCCATCCTGAATTCCCACACTTcttaattt
acttttattttcaaagagcTTGAGTGGTCATGCCCTTCCAGCAATGGTAC
TTGGTACAATTACACAGTGGCCACACTTCCCAAGAACTCGTCATTGTGCA
ACAAATTCCTGGTCCACGAGCCAACCTCGCCCAGTATTGAATTCTGGGAA
CGTCGTGTTCTGCAAATTACAAATGGACTGGATGAAAGCGGTGATGTTCA
GTATGAATTGTTGATTTGTTTGGTGGTTGCTTGGATACTTGTTTTCGTGT
GTTTGTTCAAAGGAATCAAAACATCCGGCAAGGTATTTTAGCCTATTTTA
TCCACTTTGTGCAAAATCGCGTCGTTAATACGTCGAAATATCCTAAAGCC
ACGTATACTTTTTGcaatagttttattttattctttagGTTTCAAAACTT
GATAAAGCGGGGGGGGTTAGAATAAAAATTTCCTGGGTGGgtgtaaaatt
tttgaaaaggagactaatacagcagaataattataaagaaatatatttCA
TCAAATTGTTTGGTTTTTTATACCTATTTATCGCTATTTCCTCTGCAATG
AAATACACACCTATGAGAATTAAATCGCTGATTCACTGTGATAATCATTG
AGTCGGGATTTGAGACAGAAATACTGGGTCGTCCCAGCTGTGCTCCTCCg
tcaaaaagaaagtaaaaatacTTGGAAAATATAATAATATGTGCGCTCTT
TCTCCTTTTCAGGTGGTATATTTTACAGCAACATTCCCTTACATAGTAAT
GTTTATTCTCCTTATTCGTGGCGCCATTTTGGAAGGAGCATCCGAGGGTA
TCAAATACTACCTGATGCCTTCATTTGATAAACTGAAAGATGCCAAAGTG
TGGGTGGCTGCTGCAACTCAAATCTTCTACTCCCTTGGGATTGGTTTTGG
TTCGTTGATCGCTTTTGGAAGTTACAACAAAGTCAATAATAATATTGTGA
GGTAAAAAGTTCATCTCTGCTACTGCTACTGTAATATCCTTTatcccgca
tcagtaagattctagtgatttcattggtcaaaagacatcacgtggaggtg
ggatataAACCGTATCCTGTCTTCTTCGcgttcgattgagaaaaaaagaa
gacattgcatattgacgaatgcgctttcgaatgttttgttttgaaaagac
ttgaaatcgaaattgaaatggTCGGGGTTGAGAAAGTCAACAAACAGGAA
ATCTTTGAAGTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGTTGAGAAAGTCAACAAACAGGAAATCTTtgaagtt
attttgatttttacttttcttgagtTTATATGGATACAACAAGACTTTTA
ATTGCGATGTTATAAAATGTCACTCTCACGGATCCCACAAACTCGgcaag
cctcgccaccaatacagtttttactgaccctgtatatcccgtatcccacc
tcgagaagaccgtgtaactaatatTATCCCGCATCAGTGAGATTCTAacg
atttcattggtcaaaagacatcacgtggaggtgggatatGTACCGTATCT
GTCTTCCTCACGTTCgattaagaaaaaaaagaagacattgcatattgacg
aatgtgctttcgaatgttttgatcaagattcgaatgttttgttttgaaaa
gacttgaaatcgaaattgaaatggTCGGGGTTGAGAAAGTcaacaaacaa
aaaatcttcagttattttgatttttacttttcttgagtTTAATGGATACA
GCAAGATTTTTAATTGCGATGttataaaatgtaactttcacGGATCTCCC
TTTCACTGTTTGATTTACTTTGTAGCTCTTTGTTGATGTAAGTATTTACT
TGGATTTTTTCGTGGTTTTGGAAAAGATGCAAGGGACTTCAACGGGATAA
ATCCGTTGCACGCGGTCGTCTCGAGaagcctcgccaccaatacggtttta
ctgaccctatatatcccgtatcccacctcgagaagaccgtgtaactaata
gAATTCTTTACCTTTTCACCCAAGAAATAGTGAAAACTTAACATGTACTT
AAAAGACGAACTTAATTAAGCGATTCCTTTATTTTCAACTTGTACATTTT
TGAAGTCTGGcgataaattttattttcaatccggCAAATTGTCCCCATCA
AGAAAGCAAGAAAGAAGTTTCTAGCTTGTGGCCgaagtcaaagaaaaaaa
atgtattagTACAAGTTTTGCCAGAAGCTAAGCTCACTCATACATTGATT
ATTACCATTTAAGTAATTCGACCGTGAGGTGCTTGTTCGAGGAAGTACGG
TAATTCTAAATATAAAGAACTTGCGTTTACGAGGGAATGACCCAAAGTTT
AAATTAACCTTTCTCTTCATTTCATTTCAGAGATGCGATCGCTCTTTCAT
TGACGAATTGTATGACGTCAGTGTTCGCTGGTTTTGTTGTATTCAGTGTT
CTTGGTCACATGGCGCATAAAAGCAAGCTCTCCATACAAAAAGTCGCAAC
CCAAGGTATATTACACCTCAACCCCTTATTCGTGCAGCTCAAGAATCTAT
CTAATCTACCTGAACATACTTGGACAAGTAATGGTcgaatgatatttttt
taaagatacatCCGATTCAAGTATATACCGAGACTCGTAGCTTTATAGAG
TGTAATTTCCAAGACCATATACTTGGACAAGTATTAGTCGaatgatattt
tttaaaagatacatCTGATTTAAGTATATACCGAGACTCGTAGCTTTATA
GAGTGTAATTTCCAAGATCTGCAAAAGGTTAATCCAGAgactttaaattc
aaaatttaagaattttcaaagcaaCTTTAGATTTAAAATCAGACAATAAC
ACAACatattgattttttgtttcaggACCTGGCTTGATATTCGTGGTTTA
TCCAGAAGGCCTAGCCCAGATGCCAGTCTCCACTCTGTGGGGCGTCTTAT
TTTTCTTCATGATCCTGATGATCGGGTTAGATACGCAGTTCGCCATGCTA
GAGGCTGTCATTGTTGGCCTGTCTGATGAATACAAAGTACTGCGTCAGCA
TAAAACTACTTTCATTTTCGTCATTTGTTTATTAGCTTTGTTATTTGGCA
TCTCCATGGTTACTCAGGTACGTTTCATTATACATCCAATTTACTCTCTT
TTATTCAAATCTTCAAAGACCAggaattttccttaaaaaggtAAAGAGAC
ATAAGTTACGTACACTTCATCACTTCATTATGTCAGCTAAAATTTACTGA
CCTAACCTAAACAGGGGTGTGAACCTAAACAGGGGTGTGATTAGCTGTAG
TTTTTTAAAACCGGGTGAAAAAGAGTCTTCAATGAATTAGTTTATCAAGT
GATGGGAGATTAACATCTCAGCTAACTTTGCATTTTTCAGGGCTAAAGAA
TACTGTTCTAGACACTGCtgttcaagttttattttttaaagtgtAGACAA
ATTAGTATATCAAGCGATGTTAAAATTAAAACTCTGCTCCAAATCAAGCA
TTCTAaattaaatttatatttttcagggtggtatgtacatcttcaacatt
ttcaactggCAATCAGGGGGCGTTTCCCTTCTCATTCTGGCTTTCATAGA
AGTTTGTGCTATATCTTACGGATACGGAGCCGATAGGTTTGAAAAAGACT
TGGAGTTAATCCTGGGAAGAAAACCGTCCCGTTGGTGGAAGATTTGTTGG
AAATATCTTTCGCCTTTTGTGATCTTGGCAACGTTAATTTCAAGCTTGGT
GCAATGGAAGGGAATCAGTTACAATGGGATTAGGTGAGATTTCTCTAAGC
TTAAATTTACTCTTtatccatttcaatattttctaacTTTGCACGGTAGC
TGTTGAAGGATTATTTCTTACTGGGACACTTCTACTTGGACCTTTATTCA
ACGAAAATCATTTACGATCAATTTTGCTGGTTTTTGTAAAACCTTGTACC
TTTAGCCTTTCTATTGAACGATATGAATTTTATGATAGCCCAATGTATTT
AGTGGTCTTACAGTAATGTAGCTTTTTGGATTTACATATAGAATATACAG
TAgtgtttctttaactcgaacctctgttACTCGAAtgcctccttaactcg
aacaagttttctcgtccttcaattaacaatgccttatataTCTTATTCAA
TAAATGGAAATTTgcttaactcaaacaagtttatattccccgtgcgtgtt
caagTTAAGGAAACTCCACTGTACATTaaagtctctttaactcaaagttc
tataactcgaatttctccataacttgaactaattaacaatgccttataaa
ccctactccataactcgaaatttcctaaactcgaacaaatttgtgttccc
cgtgcgggtttgagttatggagattccATTTTACCATCTTTTTCAGTTAT
CCAGTGTACGGTGAAGTTATCGGATGGTTCCTCGCCCTCACGTCAGTCAT
TTGGATTCCGCTTGTCGCTctctataaaatgaaattctctgCTTCTGGTT
CAATATGTAATCGTTTACGTCATCTTTTAACACCCAATATGGCGGAATTG
CGTCAGGTTGCCCTGGACAATGGTTTGAATACAAGTTTTGATGCAAATGC
TTGAAGTCTTTTGAATGCTAGAGACGTAGTGCGATTCGGAAATACCACCT
AAAACTAACTACTATAAAAGGCAATGTTTTTCAAGCCTGTCGTCGATAAC
TAGCTACTATGTAAGACAATACTCAAGCAAAAACCAAGCTAAATACCGTT
TATGAGAGACTTTTCTGGTCACGTAGACCAAAATGAAGACACGTATCGAT
CACGTCATCGAAAGTTAAAATATTCCTACGCATATTATAAGGAccagttt
tttttttggacaatgccgtgttaataaaaattttgtttgtcATTATCCTT
TGCGTAGTTTACTAATTCCTCGAGATTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040602XLOC_040602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064736-exon-scaffold_423-1491911889:215132..215162TCONS_00064736-exon-scaffold_423-1491911889:215132..215162Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:215132..215162TCONS_00064736-exon-scaffold_423-1510915933:215132..215162Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:215132..215162TCONS_00064736-exon-scaffold_423-1575043694:215132..215162Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:215438..215615TCONS_00064736-exon-scaffold_423-1491911889:215438..215615Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:215438..215615TCONS_00064736-exon-scaffold_423-1510915933:215438..215615Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:215438..215615TCONS_00064736-exon-scaffold_423-1575043694:215438..215615Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:218095..218261TCONS_00064736-exon-scaffold_423-1491911889:218095..218261Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:218095..218261TCONS_00064736-exon-scaffold_423-1510915933:218095..218261Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:218095..218261TCONS_00064736-exon-scaffold_423-1575043694:218095..218261Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:218683..218853TCONS_00064736-exon-scaffold_423-1491911889:218683..218853Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:218683..218853TCONS_00064736-exon-scaffold_423-1510915933:218683..218853Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:218683..218853TCONS_00064736-exon-scaffold_423-1575043694:218683..218853Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:220248..220513TCONS_00064736-exon-scaffold_423-1491911889:220248..220513Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:220248..220513TCONS_00064736-exon-scaffold_423-1510915933:220248..220513Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:220248..220513TCONS_00064736-exon-scaffold_423-1575043694:220248..220513Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:220944..221182TCONS_00064736-exon-scaffold_423-1491911889:220944..221182Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:220944..221182TCONS_00064736-exon-scaffold_423-1510915933:220944..221182Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:220944..221182TCONS_00064736-exon-scaffold_423-1575043694:220944..221182Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:222612..222736TCONS_00064736-exon-scaffold_423-1491911889:222612..222736Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:222612..222736TCONS_00064736-exon-scaffold_423-1510915933:222612..222736Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:222612..222736TCONS_00064736-exon-scaffold_423-1575043694:222612..222736Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:223107..223348TCONS_00064736-exon-scaffold_423-1491911889:223107..223348Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:223107..223348TCONS_00064736-exon-scaffold_423-1510915933:223107..223348Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:223107..223348TCONS_00064736-exon-scaffold_423-1575043694:223107..223348Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:223758..224014TCONS_00064736-exon-scaffold_423-1491911889:223758..224014Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:223758..224014TCONS_00064736-exon-scaffold_423-1510915933:223758..224014Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:223758..224014TCONS_00064736-exon-scaffold_423-1575043694:223758..224014Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1491911889:224628..225163TCONS_00064736-exon-scaffold_423-1491911889:224628..225163Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1510915933:224628..225163TCONS_00064736-exon-scaffold_423-1510915933:224628..225163Clytia hemisphaericaexon
TCONS_00064736-exon-scaffold_423-1575043694:224628..225163TCONS_00064736-exon-scaffold_423-1575043694:224628..225163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:215132..225163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0362905	0.120906	0.0701917	0.107913	0	0.00121363	0	0.0690727	3.29376	3.93643	3.6626	2.07953	0.276697	0.486813	0.171471	0.264438	2.95645	3.16706	0.915529	0	2.03825	2.03576	0.498102	1.55212	0	8.02564e-10	0.0497615	0.246238	0.0589778	0.0300445
Blast
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BLAST of TCONS_00064736 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 518.079 bits (1333), Expect = 1.147e-174
Identity = 255/575 (44.35%), Postives = 373/575 (64.87%), Query Frame = 1 
Query:  115 ASEKTERETWGRKLEFILTCVGYCVGLGNVWRFPYLVFSNGGGAFIVPYFIMLFVCGMPLFLMELALGQYFRLGPVTTWNLACPLGKGIGYAMIAVSFLCTIYYNVIIAWVLYFLYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLMPSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIALSLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLAQMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEY-KVLRQHKTTFIFVICLLALLFGISMVTQGGMYIFNIFNWQSG-GVSLLILAFIEVCAISYGYGADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYNGISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPNMAELR 1833
            A++  +R+TW  + +F+++CVGY +GLGNVWRFPYL   NGGGAF++PYF+ L   G+PLFL+E +LGQY  +G +  W LA P+ KG+G A   +SF   IYY VII+W +Y+LY S    +PWK C N WNT  C                              N S+ N       TS  +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+  +GKVVYF+AT+PYI++ IL  RG  L GA EGI +Y+ P+F KL D++VW+ AATQIF+S G+G GSLIA GSYN  +NN+ RD+I +   N  TS+FAGFV+FS++G MAH +K SI  VA  GPGL F+ YPE + Q+P+S LW +LFF M+LM+G+D+QF  +E  I  L DEY ++LR  +  FI  +C+++ L G+S +TQGG+Y+F +F++ S  G+SLL L F E  +IS+ YG +RF  +++ ++G +P  WWK+CW + +P ++    I S VQ   ++     +P +G+ +GW +AL+S++ IP    Y M  +  GS+  R++ ++ P+   +R
Sbjct:   38 AADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLA-PMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAY-MFLTLKGSLKQRIQVMVQPSEDIVR 579
The following BLAST results are available for this feature:
BLAST of TCONS_00064736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A11.147e-17444.35Sodium- and chloride-dependent GABA transporter 1 ... [more]
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