TCONS_00064733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064733
Unique NameTCONS_00064733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064733 ID=TCONS_00064733|Name=TCONS_00064733|organism=Clytia hemisphaerica|type=transcript|length=2437bp
tagagaAGTTTTTATCAGCCTTTGACTTGCGGTCAAACTTGATGAAGCCC
TTTCGTTTGGTAGAAGTCTTATTTTAATGCGAAAGGTACTTAACAAAAAA
AACACCTGCTGCAGTACCTTCTTTTGGTCCATCATTCCCTCACTCACACC
ATCAACTCAACTTCTTCGCTAGAAAGATCAAGTCAATTGGAAGAAAATCA
GTGTCTTGAATATGACTGTATTCTTCAATGTTTAGTAAACTCACTTTTCA
TTTGAGACATCATGTCGTCTACTGTGGAGAAAATTCCTCTCACCAATGGT
GCTAACGAACGTAACCATAGCAACAGTAATAACAATACAGCTAGTGAGAA
GACAGAAAGGGAGACGTGGGGACGAAAGTTGgaatttattttgacatgtg
tgGGCTATTGTGTCGGTCTTGGTAATGTTTGGAGGTTTCCATACTTGGTG
TTCAGTAATGGAGGAGGAGCTTTCATTGTCCCCTACTTCATCATGTTGTT
CGTCTGTGGAATGCCATTGTTCTTAATGGAGCTGGCTTTGGGTCAGTACT
TTCGTCTTGGACCTGTCACGACCTGGAATCTTGCATGTCCTCTTGGAAAA
GGGATAGGGTACGCAATGATCGCCGTCTCCTTCTTATGTACCATCTACTA
CAACGTCATTATAGCTTGGGTGCTCTACTTTCTGTACGCATCCATGAAAC
CACAAGTTCCTTGGAAAAGTTGCTTCAATTCGTGGAATACACCTAATTGT
AGAGAAGATAACCATAAACCGAagcTTGAGTGGTCATGCCCTTCCAGCAA
TGGTACTTGGTACAATTACACAGTGGCCACACTTCCCAAGAACTCGTCAT
TGTGCAACAAATTCCTGGTCCACGAGCCAACCTCGCCCAGTATTGAATTC
TGGGAACGTCGTGTTCTGCAAATTACAAATGGACTGGATGAAAGCGGTGA
TGTTCAGTATGAATTGTTGATTTGTTTGGTGGTTGCTTGGATACTTGTTT
TCGTGTGTTTGTTCAAAGGAATCAAAACATCCGGCAAGGTGGTATATTTT
ACAGCAACATTCCCTTACATAGTAATGTTTATTCTCCTTATTCGTGGCGC
CATTTTGGAAGGAGCATCCGAGGGTATCAAATACTACCTGATGCCTTCAT
TTGATAAACTGAAAGATGCCAAAGTGTGGGTGGCTGCTGCAACTCAAATC
TTCTACTCCCTTGGGATTGGTTTTGGTTCGTTGATCGCTTTTGGAAGTTA
CAACAAAGTCAATAATAATATTGTGAGAGATGCGATCGCTCTTTCATTGA
CGAATTGTATGACGTCAGTGTTCGCTGGTTTTGTTGTATTCAGTGTTCTT
GGTCACATGGCGCATAAAAGCAAGCTCTCCATACAAAAAGTCGCAACCCA
AGgACCTGGCTTGATATTCGTGGTTTATCCAGAAGGCCTAGCCCAGATGC
CAGTCTCCACTCTGTGGGGCGTCTTATTTTTCTTCATGATCCTGATGATC
GGGTTAGATACGCAGTTCGCCATGCTAGAGGCTGTCATTGTTGGCCTGTC
TGATGAATACAAAGTACTGCGTCAGCATAAAACTACTTTCATTTTCGTCA
TTTGTTTATTAGCTTTGTTATTTGGCATCTCCATGGTTACTCAGggtggt
atgtacatcttcaacattttcaactggCAATCAGGGGGCGTTTCCCTTCT
CATTCTGGCTTTCATAGAAGTTTGTGCTATATCTTACGGATACGGAGCCG
ATAGGTTTGAAAAAGACTTGGAGTTAATCCTGGGAAGAAAACCGTCCCGT
TGGTGGAAGATTTGTTGGAAATATCTTTCGCCTTTTGTGATCTTGGCAAC
GTTAATTTCAAGCTTGGTGCAATGGAAGGGAATCAGTTACAATGGGATTA
GTTATCCAGTGTACGGTGAAGTTATCGGATGGTTCCTCGCCCTCACGTCA
GTCATTTGGATTCCGCTTGTCGCTctctataaaatgaaattctctgCTTC
TGGTTCAATATGTAATCGTTTACGTCATCTTTTAACACCCAATATGGCGG
AATTGCGTCAGGTTGCCCTGGACAATGGTTTGAATACAAGTTTTGATGCA
AATGCTTGAAGTCTTTTGAATGCTAGAGACGTAGTGCGATTCGGAAATAC
CACCTAAAACTAACTACTATAAAAGGCAATGTTTTTCAAGCCTGTCGTCG
ATAACTAGCTACTATGTAAGACAATACTCAAGCAAAAACCAAGCTAAATA
CCGTTTATGAGAGACTTTTCTGGTCACGTAGACCAAAATGAAGACACGTA
TCGATCACGTCATCGAAAGTTAAAATATTCCTACGCATATTATAAGGAcc
agttttttttttggacaatgccgtgttaataaaaattttgtttgtcATTA
TCCTTTGCGTAGTTTACTAATTCCTCGAGATTCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_423:214453..225163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064733 ID=TCONS_00064733|Name=TCONS_00064733|organism=Clytia hemisphaerica|type=transcript|length=10711bp|location=Sequence derived from alignment at scaffold_423:214453..225163+ (Clytia hemisphaerica)
tagagaAGTTTTTATCAGCCTTTGACTTGCGGTCAAACTTGATGAAGCCC
TTTCGTTTGGTAGAAGTCTTATTTTAATGCGAAAGGTACTTAACAAAAAA
AACACCTGCTGCAGTACCTTCTTTTGGTCCATCATTCCCTCACTCACACC
ATCAACTCAACTTCTTCGCTAGAAAGATCAAGTCAATTGGAAGAAAATCA
GTGTCTTGAATATGACTGTATTCTTCAATGTTTAGTAAACTCACTTTTCA
TTTGAGGTAaggtttaaaagttttttatgtATCCACTTGTTCAACAGGTA
TAACTCTTTTCACTCTTTAAAGACAGGTATTACTTTATTACAATCTCTCT
TTACCCCTTACGTTCTTTACGCCAAAGGGAAATACtcctttttatctttt
ttccaatttttcataacaaaatttttgtttcagttaCAAGAACATTTGCT
CAAGTGGAAcaatgtattcatgatatgcaccactgcaatgtcttctgaca
ttaaatcacggacccaacagctgattggttgtaagtgacgtaaaatcaga
cAATACGTCAccttcaaccaatcagctgttggttccgtgaaagacattgc
aatggtgcttATCATGAATTGAGTAATCCTTTCATTTTTGAATCTGTCTT
TTTTTACTTATGCATTCTTCTTTGAAGATAACTGGTTAATAAGGATGAAT
ATTTAACATGGTAAGGTATTGGAGCATGAGTATTGATTTGTGGTATATTT
ATTAATCGCTCATGGGAAATCTGTAACAGTTAGTCTGTCTTTTGTGTAGG
GGAATATAATAGCTGTAGTCTTAAGTATGAACTCTGGTATGTTTACAGGT
AAAAACTGGCTAAGAACTCAACTCGGCCTGTCTTCCACTTTTGCTTTGAA
CATCATACCTTATTATGAAAATTTGACCACTTCTTGGAATTTGATGAGTC
AGCAATAAGCAATCAACTGATATCTTTTTTTCCAGACATCATGTCGTCTA
CTGTGGAGAAAATTCCTCTCACCAATGGTGCTAACGAACGTAACCATAGC
AACAGTAATAACAATACAGCTAGTGAGAAGACAGAAAGGGAGACGTGGGG
ACGAAAGTTGgaatttattttgacatgtgtgGGCTATTGTGTCGGTCTTG
GTAATGTTTGGAGGTaatttttcgaagtttttttccttcttcaCTAATAA
AATTGAAAGGTTTTGATCACATAGAGGAGATTtggctttttcaaaaattt
cttgtcGCTATACctggtgcgccacaaaaaagtttctcttctttgaaaca
aattttttcgaaatctaaaaattttaaaagaaccatttctatttcattgg
aaagaaagaaagatagacttaaattttgatggattatttattaaaatcga
ttcattaaatcaaaagttatgttcaattgaatagaaaagttactttcgaa
aagtgctgaaaaacgttaaaaattaacctatcaaatcaaacagaagcatg
attacatgatacatcagtattttcgtttcagtcattaaagatgataatta
gctgtctaaatgaccttagTTGTATAAaagaaggttgaatttcaatgaaa
tgaagaaaatacGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCACAGGTGTTTGCCA
TAAGCAAAAGTTGGTAATGCAAAGTCTCACAAAATCGCATTTAgcaaacg
caaaaaaaaaattccataatggcggcatcTTGCGAGAGCAATCAGAatac
caaaataaacaaatttcaaaggcTCATTGTTAGTGTTTGAGTGAAGctat
catcaaaaaataaaaataaaacaaacctttaacctttcaataatccaaat
aaacaaaatatgtCAAATGAATTGATGTTTAAGTTCGAAAACAAGCACCA
TTTCCACCATacacttttagagcaaaaagcaGTATTTCGCTGAAATCTGC
TGCTCTTCCCAGGCAAATAATTTCTCAGAATGTCAGAGAGTCTGGTGCTG
AATATATAGTTTAGTGGGTCAAGCTTGTTTTAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCATCTGAGACGGGGGTCATAAACGATCTTTGTC
TATTTTGAAGTCGTACAATCTTTTACTTCTCAAAACCATTTAGATTCAGG
TTTTATATATAATAACAAAGATctttaaccaaaatttgtttCATTAAAGT
TATTTTCTTTCAGCGAAATAAGCCTTTAGTAAATATTTAAACCCCCGGTT
TTATTTAGATATTTACAATGTGATTTTATAGCGGGAGTTGGAAACCGGCT
AGATTGTgtgatctgattggctaaagGAGCAAACGCGGGACTCGGCCTAG
GACTTTTTACCCGCGTTTTAAACGCGTTTACGGCAATGTTTATTCtttac
actttcgttttcaaaatctgttGAACATGGATTTTGGCTTGTGACGATAA
CCTCGCGTAACATCTGtgtgatatgcaccactggagagtctccCGTGAAC
TTTTCCACCCAATATGTCACTTaaagaatagaaaaagtgaggtattgggt
ggaaatttttgaaaattctcggACGCCTCCAGAGGTGCATGAATTGGCTA
TAGCTCGTTTCTAGACTAGTGTTTCTTTCATAGAATAAAGTATTGGGATT
TGTAGAAAATAACAGGTACCTTTTCACTATTTTACTCTGCAGGTTTCCAT
ACTTGGTGTTCAGTAATGGAGGAGGAGCTTTCATTGTCCCCTACTTCATC
ATGTTGTTCGTCTGTGGAATGCCATTGTTCTTAATGGAGCTGGCTTTGGG
TCAGTACTTTCGTCTTGGACCTGTCACGACCTGGAATCTTGCATGTCCTC
TTGGAAAAGGTATGAGATATTATTTTTACAGATATGCTTTTTTCAAACGT
GCCTAAATCGATGACTTGGTTTCTGACAGCTCTAACAAACTGTTGGAAAC
CTAGACTTCTTGAAAGTTACGTTTGAGTGAAGTTTTACCTTAATGAATCG
TTAACGTCTTGATAATGCGGATACATCTTAAGAGCCCAGGAAAAGCAAGT
GgtgttaaaaaatgtttgttaTAATTCAACATTCGCTTTCGTTTTATAAC
TTCAGTACCAAGCACTAGCttgaaatgaatgaatgatATATACCAACCTC
CACCCACCTTGAACTCTgttgtactaacttttttgagatttgaaattaga
caccaccacatAGTTATGGGTCAGTACCCTGCGGCTGTATCCCCTTCCTC
ATTATAAACATCAATACTTTCTGCTTTCAGGGATAGGGTACGCAATGATC
GCCGTCTCCTTCTTATGTACCATCTACTACAACGTCATTATAGCTTGGGT
GCTCTACTTTCTGTACGCATCCATGAAACCACAAGTTCCTTGGAAAAGTT
GCTTCAATTCGTGGAATACACCTAATTGTAGAGAAGATAACCATAAACCG
AGTTAGTGTTTGCCAGAAACTGTTAGAGTTAAGATACACAAATCAACTAC
ATATCACATTTCTCACGATAGCTCCTCATTTTCAGCTTAACAGCTTGATT
TTGTTCACTAAAGTTCCTTGGTTTACTATAAAATTGTTAtcaattttaga
tattttaacaaTGTTTTCCTTTATCCTGGGACTTACGCGTTATATATATT
AGTTTTCTTGACTGATCTTGACCTGTCCATCCTGAATTCCCACACTTctt
aatttacttttattttcaaagagcTTGAGTGGTCATGCCCTTCCAGCAAT
GGTACTTGGTACAATTACACAGTGGCCACACTTCCCAAGAACTCGTCATT
GTGCAACAAATTCCTGGTCCACGAGCCAACCTCGCCCAGTATTGAATTCT
GGGAACGTCGTGTTCTGCAAATTACAAATGGACTGGATGAAAGCGGTGAT
GTTCAGTATGAATTGTTGATTTGTTTGGTGGTTGCTTGGATACTTGTTTT
CGTGTGTTTGTTCAAAGGAATCAAAACATCCGGCAAGGTATTTTAGCCTA
TTTTATCCACTTTGTGCAAAATCGCGTCGTTAATACGTCGAAATATCCTA
AAGCCACGTATACTTTTTGcaatagttttattttattctttagGTTTCAA
AACTTGATAAAGCGGGGGGGGTTAGAATAAAAATTTCCTGGGTGGgtgta
aaatttttgaaaaggagactaatacagcagaataattataaagaaatata
tttCATCAAATTGTTTGGTTTTTTATACCTATTTATCGCTATTTCCTCTG
CAATGAAATACACACCTATGAGAATTAAATCGCTGATTCACTGTGATAAT
CATTGAGTCGGGATTTGAGACAGAAATACTGGGTCGTCCCAGCTGTGCTC
CTCCgtcaaaaagaaagtaaaaatacTTGGAAAATATAATAATATGTGCG
CTCTTTCTCCTTTTCAGGTGGTATATTTTACAGCAACATTCCCTTACATA
GTAATGTTTATTCTCCTTATTCGTGGCGCCATTTTNGTACGCATCCATGA
AACCACAAGTTCCTTGGAAAAGTTGCTTCAATTCGTGGAATACACCTAAT
TGTAGAGAAGATAACCATAAACCGAGTTAGTGTTTGCCAGAAACTGTTAG
AGTTAAGATACACAAATCAACTACATATCACATTTCTCACGATAGCTCCT
CATTTTCAGCTTAACAGCTTGATTTTGTTCACTAAAGTTCCTTGGTTTAC
TATAAAATTGTTAtcaattttagatattttaacaaTGTTTTCCTTTATCC
TGGGACTTACGCGTTATATATATTAGTTTTCTTGACTGATCTTGACCTGT
CCATCCTGAATTCCCACACTTcttaatttacttttattttcaaagagcTT
GAGTGGTCATGCCCTTCCAGCAATGGTACTTGGTACAATTACACAGTGGC
CACACTTCCCAAGAACTCGTCATTGTGCAACAAATTCCTGGTCCACGAGC
CAACCTCGCCCAGTATTGAATTCTGGGAACGTCGTGTTCTGCAAATTACA
AATGGACTGGATGAAAGCGGTGATGTTCAGTATGAATTGTTGATTTGTTT
GGTGGTTGCTTGGATACTTGTTTTCGTGTGTTTGTTCAAAGGAATCAAAA
CATCCGGCAAGGTATTTTAGCCTATTTTATCCACTTTGTGCAAAATCGCG
TCGTTAATACGTCGAAATATCCTAAAGCCACGTATACTTTTTGcaatagt
tttattttattctttagGTTTCAAAACTTGATAAAGCGGGGGGGGTTAGA
ATAAAAATTTCCTGGGTGGgtgtaaaatttttgaaaaggagactaataca
gcagaataattataaagaaatatatttCATCAAATTGTTTGGTTTTTTAT
ACCTATTTATCGCTATTTCCTCTGCAATGAAATACACACCTATGAGAATT
AAATCGCTGATTCACTGTGATAATCATTGAGTCGGGATTTGAGACAGAAA
TACTGGGTCGTCCCAGCTGTGCTCCTCCgtcaaaaagaaagtaaaaatac
TTGGAAAATATAATAATATGTGCGCTCTTTCTCCTTTTCAGGTGGTATAT
TTTACAGCAACATTCCCTTACATAGTAATGTTTATTCTCCTTATTCGTGG
CGCCATTTTGGAAGGAGCATCCGAGGGTATCAAATACTACCTGATGCCTT
CATTTGATAAACTGAAAGATGCCAAAGTGTGGGTGGCTGCTGCAACTCAA
ATCTTCTACTCCCTTGGGATTGGTTTTGGTTCGTTGATCGCTTTTGGAAG
TTACAACAAAGTCAATAATAATATTGTGAGGTAAAAAGTTCATCTCTGCT
ACTGCTACTGTAATATCCTTTatcccgcatcagtaagattctagtgattt
cattggtcaaaagacatcacgtggaggtgggatataAACCGTATCCTGTC
TTCTTCGcgttcgattgagaaaaaaagaagacattgcatattgacgaatg
cgctttcgaatgttttgttttgaaaagacttgaaatcgaaattgaaatgg
TCGGGGTTGAGAAAGTCAACAAACAGGAAATCTTTGAAGTTATTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAGA
AAGTCAACAAACAGGAAATCTTtgaagttattttgatttttacttttctt
gagtTTATATGGATACAACAAGACTTTTAATTGCGATGTTATAAAATGTC
ACTCTCACGGATCCCACAAACTCGgcaagcctcgccaccaatacagtttt
tactgaccctgtatatcccgtatcccacctcgagaagaccgtgtaactaa
tatTATCCCGCATCAGTGAGATTCTAacgatttcattggtcaaaagacat
cacgtggaggtgggatatGTACCGTATCTGTCTTCCTCACGTTCgattaa
gaaaaaaaagaagacattgcatattgacgaatgtgctttcgaatgttttg
atcaagattcgaatgttttgttttgaaaagacttgaaatcgaaattgaaa
tggTCGGGGTTGAGAAAGTcaacaaacaaaaaatcttcagttattttgat
ttttacttttcttgagtTTAATGGATACAGCAAGATTTTTAATTGCGATG
ttataaaatgtaactttcacGGATCTCCCTTTCACTGTTTGATTTACTTT
GTAGCTCTTTGTTGATGTAAGTATTTACTTGGATTTTTTCGTGGTTTTGG
AAAAGATGCAAGGGACTTCAACGGGATAAATCCGTTGCACGCGGTCGTCT
CGAGaagcctcgccaccaatacggttttactgaccctatatatcccgtat
cccacctcgagaagaccgtgtaactaatagAATTCTTTACCTTTTCACCC
AAGAAATAGTGAAAACTTAACATGTACTTAAAAGACGAACTTAATTAAGC
GATTCCTTTATTTTCAACTTGTACATTTTTGAAGTCTGGcgataaatttt
attttcaatccggCAAATTGTCCCCATCAAGAAAGCAAGAAAGAAGTTTC
TAGCTTGTGGCCgaagtcaaagaaaaaaaatgtattagTACAAGTTTTGC
CAGAAGCTAAGCTCACTCATACATTGATTATTACCATTTAAGTAATTCGA
CCGTGAGGTGCTTGTTCGAGGAAGTACGGTAATTCTAAATATAAAGAACT
TGCGTTTACGAGGGAATGACCCAAAGTTTAAATTAACCTTTCTCTTCATT
TCATTTCAGAGATGCGATCGCTCTTTCATTGACGAATTGTATGACGTCAG
TGTTCGCTGGTTTTGTTGTATTCAGTGTTCTTGGTCACATGGCGCATAAA
AGCAAGCTCTCCATACAAAAAGTCGCAACCCAAGGTATATTACACCTCAA
CCCCTTATTCGTGCAGCTCAAGAATCTATCTAATCTACCTGAACATACTT
GGACAAGTAATGGTcgaatgatatttttttaaagatacatCCGATTCAAG
TATATACCGAGACTCGTAGCTTTATAGAGTGTAATTTCCAAGACCATATA
CTTGGACAAGTATTAGTCGaatgatattttttaaaagatacatCTGATTT
AAGTATATACCGAGACTCGTAGCTTTATAGAGTGTAATTTCCAAGATCTG
CAAAAGGTTAATCCAGAgactttaaattcaaaatttaagaattttcaaag
caaCTTTAGATTTAAAATCAGACAATAACACAACatattgattttttgtt
tcaggACCTGGCTTGATATTCGTGGTTTATCCAGAAGGCCTAGCCCAGAT
GCCAGTCTCCACTCTGTGGGGCGTCTTATTTTTCTTCATGATCCTGATGA
TCGGGTTAGATACGCAGTTCGCCATGCTAGAGGCTGTCATTGTTGGCCTG
TCTGATGAATACAAAGTACTGCGTCAGCATAAAACTACTTTCATTTTCGT
CATTTGTTTATTAGCTTTGTTATTTGGCATCTCCATGGTTACTCAGGTAC
GTTTCATTATACATCCAATTTACTCTCTTTTATTCAAATCTTCAAAGACC
AggaattttccttaaaaaggtAAAGAGACATAAGTTACGTACACTTCATC
ACTTCATTATGTCAGCTAAAATTTACTGACCTAACCTAAACAGGGGTGTG
AACCTAAACAGGGGTGTGATTAGCTGTAGTTTTTTAAAACCGGGTGAAAA
AGAGTCTTCAATGAATTAGTTTATCAAGTGATGGGAGATTAACATCTCAG
CTAACTTTGCATTTTTCAGGGCTAAAGAATACTGTTCTAGACACTGCtgt
tcaagttttattttttaaagtgtAGACAAATTAGTATATCAAGCGATGTT
AAAATTAAAACTCTGCTCCAAATCAAGCATTCTAaattaaatttatattt
ttcagggtggtatgtacatcttcaacattttcaactggCAATCAGGGGGC
GTTTCCCTTCTCATTCTGGCTTTCATAGAAGTTTGTGCTATATCTTACGG
ATACGGAGCCGATAGGTTTGAAAAAGACTTGGAGTTAATCCTGGGAAGAA
AACCGTCCCGTTGGTGGAAGATTTGTTGGAAATATCTTTCGCCTTTTGTG
ATCTTGGCAACGTTAATTTCAAGCTTGGTGCAATGGAAGGGAATCAGTTA
CAATGGGATTAGGTGAGATTTCTCTAAGCTTAAATTTACTCTTtatccat
ttcaatattttctaacTTTGCACGGTAGCTGTTGAAGGATTATTTCTTAC
TGGGACACTTCTACTTGGACCTTTATTCAACGAAAATCATTTACGATCAA
TTTTGCTGGTTTTTGTAAAACCTTGTACCTTTAGCCTTTCTATTGAACGA
TATGAATTTTATGATAGCCCAATGTATTTAGTGGTCTTACAGTAATGTAG
CTTTTTGGATTTACATATAGAATATACAGTAgtgtttctttaactcgaac
ctctgttACTCGAAtgcctccttaactcgaacaagttttctcgtccttca
attaacaatgccttatataTCTTATTCAATAAATGGAAATTTgcttaact
caaacaagtttatattccccgtgcgtgttcaagTTAAGGAAACTCCACTG
TACATTaaagtctctttaactcaaagttctataactcgaatttctccata
acttgaactaattaacaatgccttataaaccctactccataactcgaaat
ttcctaaactcgaacaaatttgtgttccccgtgcgggtttgagttatgga
gattccATTTTACCATCTTTTTCAGTTATCCAGTGTACGGTGAAGTTATC
GGATGGTTCCTCGCCCTCACGTCAGTCATTTGGATTCCGCTTGTCGCTct
ctataaaatgaaattctctgCTTCTGGTTCAATATGTAATCGTTTACGTC
ATCTTTTAACACCCAATATGGCGGAATTGCGTCAGGTTGCCCTGGACAAT
GGTTTGAATACAAGTTTTGATGCAAATGCTTGAAGTCTTTTGAATGCTAG
AGACGTAGTGCGATTCGGAAATACCACCTAAAACTAACTACTATAAAAGG
CAATGTTTTTCAAGCCTGTCGTCGATAACTAGCTACTATGTAAGACAATA
CTCAAGCAAAAACCAAGCTAAATACCGTTTATGAGAGACTTTTCTGGTCA
CGTAGACCAAAATGAAGACACGTATCGATCACGTCATCGAAAGTTAAAAT
ATTCCTACGCATATTATAAGGAccagttttttttttggacaatgccgtgt
taataaaaattttgtttgtcATTATCCTTTGCGTAGTTTACTAATTCCTC
GAGATTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040602XLOC_040602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064733-exon-scaffold_423-1491911889:214453..214708TCONS_00064733-exon-scaffold_423-1491911889:214453..214708Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:214453..214708TCONS_00064733-exon-scaffold_423-1510915933:214453..214708Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:214453..214708TCONS_00064733-exon-scaffold_423-1575043694:214453..214708Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:215438..215615TCONS_00064733-exon-scaffold_423-1491911889:215438..215615Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:215438..215615TCONS_00064733-exon-scaffold_423-1510915933:215438..215615Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:215438..215615TCONS_00064733-exon-scaffold_423-1575043694:215438..215615Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:218095..218261TCONS_00064733-exon-scaffold_423-1491911889:218095..218261Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:218095..218261TCONS_00064733-exon-scaffold_423-1510915933:218095..218261Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:218095..218261TCONS_00064733-exon-scaffold_423-1575043694:218095..218261Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:218683..218853TCONS_00064733-exon-scaffold_423-1491911889:218683..218853Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:218683..218853TCONS_00064733-exon-scaffold_423-1510915933:218683..218853Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:218683..218853TCONS_00064733-exon-scaffold_423-1575043694:218683..218853Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:219124..219389TCONS_00064733-exon-scaffold_423-1491911889:219124..219389Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:219124..219389TCONS_00064733-exon-scaffold_423-1510915933:219124..219389Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:219124..219389TCONS_00064733-exon-scaffold_423-1575043694:219124..219389Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:219820..219849TCONS_00064733-exon-scaffold_423-1491911889:219820..219849Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:219820..219849TCONS_00064733-exon-scaffold_423-1510915933:219820..219849Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:219820..219849TCONS_00064733-exon-scaffold_423-1575043694:219820..219849Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:220974..221182TCONS_00064733-exon-scaffold_423-1491911889:220974..221182Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:220974..221182TCONS_00064733-exon-scaffold_423-1510915933:220974..221182Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:220974..221182TCONS_00064733-exon-scaffold_423-1575043694:220974..221182Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:222612..222736TCONS_00064733-exon-scaffold_423-1491911889:222612..222736Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:222612..222736TCONS_00064733-exon-scaffold_423-1510915933:222612..222736Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:222612..222736TCONS_00064733-exon-scaffold_423-1575043694:222612..222736Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:223107..223348TCONS_00064733-exon-scaffold_423-1491911889:223107..223348Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:223107..223348TCONS_00064733-exon-scaffold_423-1510915933:223107..223348Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:223107..223348TCONS_00064733-exon-scaffold_423-1575043694:223107..223348Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:223758..224014TCONS_00064733-exon-scaffold_423-1491911889:223758..224014Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:223758..224014TCONS_00064733-exon-scaffold_423-1510915933:223758..224014Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:223758..224014TCONS_00064733-exon-scaffold_423-1575043694:223758..224014Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1491911889:224628..225163TCONS_00064733-exon-scaffold_423-1491911889:224628..225163Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1510915933:224628..225163TCONS_00064733-exon-scaffold_423-1510915933:224628..225163Clytia hemisphaericaexon
TCONS_00064733-exon-scaffold_423-1575043694:224628..225163TCONS_00064733-exon-scaffold_423-1575043694:224628..225163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:214453..225163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0394197	0	0	0	0.0322108	0.0418768	2.9736	3.44756	2.0116	1.19324	1.71731	1.49644	0.262168	0.163359	0.0223838	0	1.42043	1.78953	0.963793	1.50118	2.74415	3.12317	0.949155	1.31493	2.74398	3.05163	0.0540523	0	0	0
Blast
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BLAST of TCONS_00064733 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 518.079 bits (1333), Expect = 1.172e-173
Identity = 255/575 (44.35%), Postives = 373/575 (64.87%), Query Frame = 1 
Query:  340 ASEKTERETWGRKLEFILTCVGYCVGLGNVWRFPYLVFSNGGGAFIVPYFIMLFVCGMPLFLMELALGQYFRLGPVTTWNLACPLGKGIGYAMIAVSFLCTIYYNVIIAWVLYFLYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLMPSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIALSLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLAQMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEY-KVLRQHKTTFIFVICLLALLFGISMVTQGGMYIFNIFNWQSG-GVSLLILAFIEVCAISYGYGADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYNGISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPNMAELR 2058
            A++  +R+TW  + +F+++CVGY +GLGNVWRFPYL   NGGGAF++PYF+ L   G+PLFL+E +LGQY  +G +  W LA P+ KG+G A   +SF   IYY VII+W +Y+LY S    +PWK C N WNT  C                              N S+ N       TS  +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+  +GKVVYF+AT+PYI++ IL  RG  L GA EGI +Y+ P+F KL D++VW+ AATQIF+S G+G GSLIA GSYN  +NN+ RD+I +   N  TS+FAGFV+FS++G MAH +K SI  VA  GPGL F+ YPE + Q+P+S LW +LFF M+LM+G+D+QF  +E  I  L DEY ++LR  +  FI  +C+++ L G+S +TQGG+Y+F +F++ S  G+SLL L F E  +IS+ YG +RF  +++ ++G +P  WWK+CW + +P ++    I S VQ   ++     +P +G+ +GW +AL+S++ IP    Y M  +  GS+  R++ ++ P+   +R
Sbjct:   38 AADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLA-PMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAY-MFLTLKGSLKQRIQVMVQPSEDIVR 579
The following BLAST results are available for this feature:
BLAST of TCONS_00064733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A11.172e-17344.35Sodium- and chloride-dependent GABA transporter 1 ... [more]
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