TCONS_00064723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064723
Unique NameTCONS_00064723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064723 ID=TCONS_00064723|Name=TCONS_00064723|organism=Clytia hemisphaerica|type=transcript|length=1550bp
ctttgttcaattttttgattttcttgaatttttttttgaaattgtgttCT
GGTTGTATTGGTTAttttggttgaaaaagtttaaaaaaacaatttgtttt
gttttttttttaaacttttaataatTTTGCTGGAACTCAACGCTCATTTT
AAGAGAAGatgATGACGGGTCAAATATTGTGTAGCTGTTTGGTGCTTAAT
CTAATAGTGCTTATATCATGTCACCCAGCCAAAGCACCAAAAGAGCGTGA
TAGACGTCAACTGATGATGATGCAAGACCCTGGGTTGGTACAAGAAGAGG
TCGCTTATATGAAAGAATGGGCTGACCAACCTGTTGAACTTGGTTTCTTT
GTCAACTCTCGCCCAGCTGGTGATTCTGATGAACCCGCTCAATCAGCTGC
ACGCCGTAACCTGATCACTGATAAACCGTCAGCACATGACGAAGGTAGCG
GCGCCGGTTCAGAATTCCGTCGTGACGAGATCTTAAAGAAACCGACGGCA
CCTTTGAATAATGACGAAATGAATACACTAACTGGTGAAGTTAGGagcaa
aatcgaaaaatccaaacCCATCGAACAATCAGTAGAGGACCCTGGAGATA
GAAGAAAGgCACGCTCTAGTGTCACGTGTCAGGGCCAAAAAGAATGGATT
CAATGTGACGGCCCGTACGAACTCATTAAAATACAAGACGCATTTTGGGG
CCGTGATGACACGCAAACTTGTACCAAAAGTGACGTAGCACGTGGTTTCA
AGACCGGTCAAAAGTGTGTTCAAGAAAGTGATAACGTGATGAAGAAAGTT
CGTGAAGCGTGCGATAATGAAAACGTGTGCGAAGTCGTCGCTTCTAACAT
TTATTTCGATCAAACAGACTGTCCAGATGTGTATAAATTTTTAAGACTGA
AATGGCAATGTGCTCCCAGTGAATCTAGGATCAAGGAAACAGCATAGATT
ACATAAATTACATAATTTTATCATTCACCAATGTTAGACGTGTACATTCT
TCCCTGCAGAGAGAGAGTCGGCTCAATTTTGACGATGCGATGGACGAGTA
AACAACTTGGAATGAAATGTTTTTGTGCCCCCCACTGCACTTTTAGTTTT
ATGTATACAATTTGACGATTTACCAAATGGTATCAAAACGTACAATTGAA
TGTTGGTTAAGTTAGACGTTCTTGGATCTTCTTGTGAAACGAATCCTTAA
CAATGTGACGAAGACGATGAAATAGACAAATTTAATTATAAGTAACTTTA
CTCATGATAAGTAccacattgaaaattttttcctgttcCCTAAGTTTTTG
TACGTTGACAAAAAAcctcagaaaaatgaaaaaccactTAAAGACAATAC
CCCTTGCTTGCAATACGCCTGTGACACTTGTCAGAAGAATATATTTGGGA
TTCACTCAAAATAGAACCCAAGATTTTGAGCGAATAAATAACCATTTTTA
AGTGATTGTAAAAACAGTAACGAGGCCTTCAAAATCAACCTGTCTTATTC
TCATTACTGTTTTATACCTTTATGACTTTCAAACGAttaatcaattttat
Run BLAST on NCBI

transcript from alignment at scaffold_423:102408..108383+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064723 ID=TCONS_00064723|Name=TCONS_00064723|organism=Clytia hemisphaerica|type=transcript|length=5976bp|location=Sequence derived from alignment at scaffold_423:102408..108383+ (Clytia hemisphaerica)
ctttgttcaattttttgattttcttgaatttttttttgaaattgtgttCT
GGTTGTATTGGTTAttttggttgaaaaagtttaaaaaaacaatttgtttt
gttttttttttaaacttttaataatTTTGCTGGAACTCAACGCTCATTTT
AAGAGAAGGTATGAGGAATTATtccattcttttttgaaaataaacggaga
aactttttttccaaataattaaagtttcttgatttttcaaggtaTGATAC
CGCTCTGCCACTCTGTCAATTATAATATTTAGTATTCCGTTGAATTTAAA
GGTAAGACGTCTGAGAGTAGGGGATTAATAATAATGCCAGAAATGTTTTA
TCCGTATTCCTTCCATGTATTGAAATCAATAATATCTTCCATCGTTCTTT
TTAAATCAGAAATAGTTTGCAAGGAGGcttgacgtccagggtggtctgga
aaataaaaaatccaggggtctggtctggtttttcgagtgtaaaaatccag
ggtgttCAGTTAAAacagggttcagacagaccctggaaaacctggaaata
tgataaattttcagaaaaatcagggaaactcagggaaactcagggaaacc
cagggaaaaaattttttttcccagtctgctcagggaaactgagggaattt
tatttgttgaagaatgaatggaaaaaacagatttaaaagtttttttagtt
ttaaagtgtTTATTCATATGCAGTATTTGTAGCTTTAATTTTTACCTTAG
GTTTACCATTTGATTTGTGTGCCTTTTGTTTAAAGATACATCTCTTTCGA
CTATGcttagtttttatggtttgcttgatactcagggaaaaaatagggaa
aaaatagctaaaatgaggaatttctcagggaaaaaacctttgaaaattga
ttaaaattcagggaaactcagggaattttattttcgaaggtctgtctgaa
ccctgtaAAATTAAGTGCAAAActagggtggtcagtaaaacggaGTCGAA
AATCTAGGGTGGTCCAAAAATACGAAGAAAAAATCATAGGGGGGtcttga
aaaattagaaaaatgcaGGGGATCGAATGGAAGATTAAAAATAATACCAA
AACTGTTTTATCCATACTCTAAGGTCCAGAACAACCTGGTTTTAGTCTAT
AATCACCCTTTTTTGGGTGGTTACGAGGTACAATTTCCCGACAATTTCCA
AACCCTTGGCAATTAGGTCCTCCCTcccgtttattatattttgtaaaatt
tcggaCATCCTTACTATCAGTAGCGTGGCGGGTCGACTAAAACTTAGGAG
GCAATTTCGAAAGTTGGGATATTGGCGCTCCTTTTTAATTAACCACGAAA
AAGTTTTGGGTACTTTTCTCATTTTGGCCTAAAACAGCCAATTCTAAGTT
GTAATATAAAGCAAAAGGGCGTAAAAATGAGTAATCAAAGGTGCCTTTTT
TCATCCCTTTGGGGGGTTGCAGTTACCCCGTTTAGAGCAGTTTAGCTTTT
TAGAGCAGTTTAGACCGGttaattacaattttttcatgcCTTGTACGGCC
CAATTTCGCCGTTTGCCGGCTAAATAAGGTCCctgaataaataaatgaaa
tgcCTTAATCCTGGCTTTGTGTTTTATATCTTGCTTAAGTTGGATAACTG
ACAAGGGAACATCTATCAATGTTGTTGAAAATACAATGTATTGCAGTGCT
GGGTGTATATTTCTAAAGGATAATCCTTTCTTATCTTTTTCCCGAGGAAA
ACAATCAAATTTTTCTGTTGTCTAACTTTCCCAAGTGGAGAtaatgaaga
tttttcaaaaaatggatttttataACGTTCTTCAATTGATATTTGATCGT
TTGTTTTGTTAAAATAGAACGGCCGAAGTTAACTTAGCCAAAAATTAATT
CGATGGAGATAAAATAACTGTTCATTGGATAACTGCGAGTTTTTGTGAAA
GTTGGATTAACAGATCCATTTACTTCCAAGTCCAAAGGGCTAGACTCAAG
ACTCCTGGATGATAAATAAAGCCACTTTTTCCCCATttagaacgcccgcg
cgtggtttttacacaaacgccggattgaaagtaaaatctatcgctagatt
taaaaaaatgcaatcctcaaaaacaaaggaaccgctagatacaatccgtc
gtcatgattgcggtgcgttctagatgggaaataagcgacctcactttttc
ttgcctgcgaaaggttagagattgggcttttccagaaaaaaaaccgtaca
ccccctattgaggagctccaaccttttgtgaattacccccttggaattcc
aggcaattttaggatcatacccctctggaattccgaatttttacagattt
tcattcattcattcttacccccatggaattccacttatttttgacggatt
tttgtctactgctatggaattccactgcatttcaaaccatacccccttgg
aatggaaatggactcctcaacagggggtgcacggtttttttctggaaaag
cccattcttctctagccctttgggcttcaAACTCGAGCAGATCCAACGAA
GGCTGTCAACATCCCCTCTAATTGATATGTTTTGTGATGTAATGTGATGT
GTTTTGAGGTGGGAGTCTTTTAAATTATCAGAATctgaaagaggaaaaat
ataCCACAAAAAACCTGCTTAACAAATTGTTTTCGGGTCTGAATTGCCTC
CCTCATGACAATAACTCTTTTCAGGAATGCGATCAAACTAGACCATGGAA
AATTATCTTTTCGAATAACCAGGGGTTTCTTCtaataatttcttctttta
ttttttagatgATGACGGGTCAAATATTGTGTAGCTGTTTGGTGCTTAAT
CTAATAGTGCTTATAGTAAGTGTTTTCTTTATCTTCACGTCCTGAAGGTT
GGAAGTCGCTTGGGTAAATGAAGGGGTACGGGAATGTACACTCAAAAGGC
TAAATTCCAGGAAAAAGCTCCGATAAGGGTCTTAAAATTCCTAATTTCTC
TGATTTGTTCTCTATTTTGGCCCttattttccaatattttttatttttcc
atattttctCAAAGATTGTATACAAGTACTATTTAACttcaatcaaagtc
ataatatttgagaaaaaagagaaattcccacgaaatcttacaaccacaaa
cgatttggaagcgctctaaagtaggttggaagggtagagttttaacatga
gacttaagacttgggAGGACCTTAGTatttgaggatccaaaagtccaagA
ATGATCTAACAGGGCTCGGAATATAGCCTaaaagtctataaacccctccc
gaattgaaatattagaataaatttatcaattagctcAAAAGTGACGttct
cgcccgagctttaaattgctaaaaacgagaaattaaccaaaattctcaat
atattttgaccgagattgttGGCAATCTACTGATAGTGCTCGTGTGAATT
GAAATTAATGATTATTTATAAATCCCAATTAAGTACGAATTCCTTTTTAA
TGAATTGACCGAAATTTAATCTTGCTTTAGTCATGTCACCCAGCCAAAGC
ACCAAAAGAGCGTGATAGACGTCAACTGATGATGATGCAAGACCCTGGGT
TGGTACAAGAAGAGGTCGCTTATATGAAAGAATGGGCTGACCAACCTGTT
GAACTTGGTTTCTTTGTCAACTCTCGCCCAGCTGGTGATTCTGATGGTAA
GGTTTTACTCTGTGTCCTTTTTTATTTGTTAACGtgattatcagatgatt
tttgatatttggcttagagataTGGTCCAGAGAGACACCTCTAAATCTTT
TGAtccaatttttttcaaccaatttcaaattcaacttaaagactgtgtaa
agactcaattttagagatttcaaagtctcagcttttgaaaaaaattaggt
CAAAAGATTTAGAGGTGTCTCTCTGGACCATAAAAGGTATCTCTAAACCA
AATgtaaaaaatcatctgataattCCGTTAATGTTATGTTTACGCCATGT
ACCAGCTTGTATTGGCAAAGCTTGACTCTAATTACATGTTGCTGAGTGAT
TTAGAAATAACTTTTTCTCGATAACTCAGTAACAAGAGTTCCTTTGCATT
TTTCTTATCAGCAAGGGGAGGGGTACACTTTACAGCAAAACGGTGGTCTT
TTTGAATGTCAGTGTTGTATACCTATTCTAATGATTTCAACTCGAGATCG
TGGTCGAAGAAACTCGTTTTTTATGCAAACCGTTTCTTTCAGTCAGTGTT
CTCAGGCTCTTAGTAAATTGATCTAAGAAAGCTCTTACTCAGCCCTGAAA
GTATAGCTCAAACttaaatttgtcatttttcggTCGGATAAAGTTCACCA
AATCTTGCCCAGGTAttaatgaatgaatgttcaTTCGATAACTCTATTTT
AGAACCCGCTCAATCAGCTGCACGCCGTAACCTGATCACTGATAAACCGT
CAGCACATGACGAAGGTAGCGGCGCCGGTTCAGAATTCCGTCGTGACGAG
ATCTTAAAGAAACCGACGGCACCTTTGAATAATGACGAAATGAATACACT
AACTGGTGAAGTTAGGagcaaaatcgaaaaatccaaacCCATCGAACAAT
CAGTAGAGGACCCTGGAGATAGAAGAAAGGTATTAATCAAACTCTTATTT
TTTGTTGGAACTAATTAAATTATAGATATTTATTGGTAGTACCTACTTAA
GATTATAACACAGAATCTTCACTACAGTCGACTTTcgttaattcgaactc
gaacggggaatcttaaTTTTTCGTCGAATTACAAagtgattcgaattata
gaaagaatcgaataatagaggtttgAATGAGCAAGAGTCTATTGTATGTT
CTTTTTACACGAGATGTACGCTCacaaaacattttctctttttgaagtag
ctcaagtaGAAGAAAAGAGTTGAAGGTTTAAATATCCCCTGAATCGTCAA
AACACACTATTAAGATTAAACCAGCAAGTTAGCTTCAGTATATCTTTTTT
GGAATGCCGTGAAttataaatttgtttattttaggCACGCTCTAGTGTCA
CGTGTCAGGGCCAAAAAGAATGGATTCAATGTGACGGCCCGTACGAACTC
ATTAAAATACAAGACGCATTTTGGGGCCGTGATGACACGCAAACTTGTAC
CAAAAGTGACGTAGCACGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAG
AAAGTGATAACGTGATGAAGAAAGTTCGTGAAGCGTGCGATAATGAAAAC
GTGTGCGAAGTCGTCGCTTCTAACATTTATTTCGATCAAACAGACTGTCC
AGATGTGTATAAATTTTTAAGACTGAAATGGCAATGTGCTCCCAGTGAAT
CTAGGATCAAGGAAACAGCATAGATTACATAAATTACATAATTTTATCAT
TCACCAATGTTAGACGTGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTC
AATTTTGACGATGCGATGGACGAGTAAACAACTTGGAATGAAATGTTTTT
GTGCCCCCCACTGCACTTTTAGTTTTATGTATACAATTTGACGATTTACC
AAATGGTATCAAAACGTACAATTGAATGTTGGTTAAGTTAGACGTTCTTG
GATCTTCTTGTGAAACGAATCCTTAACAATGTGACGAAGACGATGAAATA
GACAAATTTAATTATAAGTAACTTTACTCATGATAAGTAccacattgaaa
attttttcctgttcCCTAAGTTTTTGTACGTTGACAAAAAAcctcagaaa
aatgaaaaaccactTAAAGACAATACCCCTTGCTTGCAATACGCCTGTGA
CACTTGTCAGAAGAATATATTTGGGATTCACTCAAAATAGAACCCAAGAT
TTTGAGCGAATAAATAACCATTTTTAAGTGATTGTAAAAACAGTAACGAG
GCCTTCAAAATCAACCTGTCTTATTCTCATTACTGTTTTATACCTTTATG
ACTTTCAAACGAttaatcaattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040597XLOC_040597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064723-exon-scaffold_423-1491911889:102408..102565TCONS_00064723-exon-scaffold_423-1491911889:102408..102565Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1510915933:102408..102565TCONS_00064723-exon-scaffold_423-1510915933:102408..102565Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1575043694:102408..102565TCONS_00064723-exon-scaffold_423-1575043694:102408..102565Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1491911889:105216..105272TCONS_00064723-exon-scaffold_423-1491911889:105216..105272Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1510915933:105216..105272TCONS_00064723-exon-scaffold_423-1510915933:105216..105272Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1575043694:105216..105272TCONS_00064723-exon-scaffold_423-1575043694:105216..105272Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1491911889:105938..106103TCONS_00064723-exon-scaffold_423-1491911889:105938..106103Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1510915933:105938..106103TCONS_00064723-exon-scaffold_423-1510915933:105938..106103Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1575043694:105938..106103TCONS_00064723-exon-scaffold_423-1575043694:105938..106103Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1491911889:106810..107036TCONS_00064723-exon-scaffold_423-1491911889:106810..107036Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1510915933:106810..107036TCONS_00064723-exon-scaffold_423-1510915933:106810..107036Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1575043694:106810..107036TCONS_00064723-exon-scaffold_423-1575043694:106810..107036Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1491911889:107442..108383TCONS_00064723-exon-scaffold_423-1491911889:107442..108383Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1510915933:107442..108383TCONS_00064723-exon-scaffold_423-1510915933:107442..108383Clytia hemisphaericaexon
TCONS_00064723-exon-scaffold_423-1575043694:107442..108383TCONS_00064723-exon-scaffold_423-1575043694:107442..108383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:102408..108383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.291018	0	0	0	0	0	3.64898	1.70806	1.06425	0.548324	5.19436	5.35322	13.7039	6.70089	7.30811	23.6482	7.68765	10.5706	0	0.647443	6.12621	4.97713	5.0836	4.57522	7.6182	4.07943	0.377053	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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