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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064715 ID=TCONS_00064715|Name=TCONS_00064715|organism=Clytia hemisphaerica|type=transcript|length=589bp ctagtgtatatgtataagaattgcgaagcgatccaggcaagtcactcgat tcgcaagttgcaagcaaaatatttatagggtcacgcANCAGCACAGCACA GGGCCAATGGCCAAAGCAGCCCAGACCAGATGCCAGAGCAGAAAAATTAG atggCCTACTCAATGGGTCAGTATTCCCAAAGAATCTTTCAGAGATGTAT ACAAAGAGAGAAGCGCAAATGACGCAATGATAATGATTGAGTTACGGAAG ATTATGAGAGGATCTTTCCATCTTAGAAGTATTCCTCATAAACTCATGAA AGAAATTTCTAGAGTGAGTGTCTCTGAAAGATCTTTTATCATTGATGGAT TACTAGCAATCATTAACAATGCAGACCTGAAATATTTAAGGATGGACTTG GTATATTATGCAAGAAAAGTGTACGATTATGTAAGATGTCAAAAAGCAAC TTCTAATTTGATGAATTGTGTCACTAGGGATGGTTTTCATGATCTATTTG AAGGTATCAAATTTCTTGCCATTGGTCTTGAAGTAGATTATTTGGACAAC ATTCATCAAATTGAGGATTTAAAAAACATGTTTGACGAA Run BLAST on NCBI transcript from alignment at scaffold_423:37594..53393+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064715 ID=TCONS_00064715|Name=TCONS_00064715|organism=Clytia hemisphaerica|type=transcript|length=15800bp|location=Sequence derived from alignment at scaffold_423:37594..53393+ (Clytia hemisphaerica) ctagtgtatatgtataagaattgcgaagcgatccaggcaagtcactcgat
tcgcaagttgcaagcaaaatatttatagggtcacgcANCAGCACAGCACA
GGGCCAATGGCCAAAGCAGCCCAGACCAGATGCCAGAGCAGAAAAATTAG
GTAAATTTCATACTTCTTATACAGATAAGCCAATGGATGAATCATTGATC
AATAGGATAATCTATTGTAGGAGATTTTTGATAGGGTTGTACAGTCAACG
GTTCTAGCTAACTTgggtagcaactccagaagttttatcaagttttaatt
ttttttcaaaattatcctatcttgtagagctttgaaaaagaaagaaaatg
aggggtcataggccatCAGAGGATTAgcggttgtaaagatattcaaattt
tagtgtcaaaaatttgactaaaaatgtcaaaaaaaaggttaggaaaatag
ctagcttggaaaataattcgaaaaatgtgtcaaaaaaaaaaaaaagaaat
tttccagtcatgcttcttaaattttgcatatctctttttctagtgtagct
agagacctcaaatttgaagggagaattctttgatggtaaaaatatttgta
aaatatttagtatatttatcaaaataacgaaagatatatctttttttgaa
aaaagaagacattgtattgttttatttttgtttttgaaNNNNNNNNNNNN
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GATTGCTCTATACAAATATTACTGTTTAAAGTGTCCCGTTATTACCccaa
aatgggaaaaaagctGGGGTAAAAACGGGACACTGTCACTAATTTTGTTG
AATGTCCTTTAAATGATAGCACTTGGATTTGAAGTCATCAAGTGAATGCA
AAACCTCAAATATCATGACCTTTTTGAAAGATATCTggatttttcaataa
cattttatacctgtcccatatttaccccgagggtgtcccgtaattacccc
aaaatgcggggtaattacgggacaccttcaaaataaattttaggaacatc
tactaaatttcaaggaaaagtaaTACATCTTATGTAAAGGTCATACTTTg
acaaataaaatatcaaaagatcggatctctaggattaatactttcagagt
gatgcccaaataagtcaaaatcgtcccgtaattaccccagatgactatac
atagaaaaaagtgcgaagggttcaaagttcacggaaaaatgaaacacttg
gtttgacgtcaacgaaagttgcatgacttctggagtcgctaactTGGGGG
GCGATTGGTTGATTGTATGTTGAAACATGGGATGGGATTATTTGTTGTTG
ATATCTCTCTGGTCTGAAAGACCTGtcagtctaagcttaaactcctatat
cagcaTTAGAAattaggctagtcttacctcttttatctttccctttgttc
aatacaatgctgacaaagttgacacaacacattgtaTTGACAAAAAGCAG
TCTATAGCttacctgagatcagattgtggttgttttctgcacatcacgct
aaagctctaaagggatgtgtgaaaacataacaatctgacgaatatgcaat
cttgAAATCGTTAGGACCgtgttcgtctaaaaggactaggaacgacaaca
aagttgtgtgattgtgtttatgaatagggcgccgtatcagtttttgagtT
TCCAGCGCACagcaagattcttgttgtagaattttccgtgGGAGGACTaa
tttcctcagatgtataattttcaagcaccttcagaggtttaccgtgtgcg
taagaaaattacgaacagctgttatcaggttatctATAGCAGAATGTTAa
ttcttctttcagaaaaaagaataCCATaatttggtctaatgtcaacatcc
gtcttctaattcaGACACCCtcttttatagataggaataataggaaggtc
gaaatcactgatagactaaacattttttcctcTCATCGCGCTAACGAAAG
TCAATCAGCGGTTCtgaccttcctcagtttctattgttcctatctctaaa
gaagggtgtcggaattagaagaggggtgtagacattagaccaagttatgg
TACTTTGCAGCCTAGAAcaatgttaaattttgtttccaCACAAATTCGTC
ACATTTGTCTCGATAGCCTCATACCtcaatttctacgggaaatcgaaatt
aatttcattcagcttgtgatgtttgagagattggatgttgggaagctgca
aggataaaggtaaacaaattttATACAGTAAGTTGGTCACCTCTCACCGA
CACctctcttctaattccgacaccctttttttcCGCTGAattttatagaa
aggttgaaactgtttttctttgcttagtggtcagagaggaataatccttt
tttaatgcagtcaggacctcctttcactttatcgatattacgcgaACGGC
AGTGTGCgttaaattattttggtttcactttcgatttcaagcaaaggtct
tagcaacaggacgCCCGTACATAGCAACCGGGCTGGgtaaaaaaatctaa
acataaaatccaaaaaaaataccgatcaaagtatagagcactaaaaaata
ccccctttctatatttagtttgttctaccttggatcaGGGAGGTAATAAA
AACTAGATGGAGtaacaacttttctgtaatagccagagaagtcatgaaac
tctttagaaatttctttcaaatcggcctcctttgattaccaatccttgat
agcaaaaatcagtcaagatatagattataagaactaaagtaaagttattc
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CTTGCGGGCGATAAAATTATGTTTTACACTTGTCTTGTATATTTAAGTGG
TATTTAtcgtatttatccaatgaaaagtaTGTTGACAgaatatgcacggc
gctgacaaaatatgcacggcattgattatgacatcgattgattcaacgcc
cgttaaagaaaataatttgtaaatagttctttttatcgtgaagtttagaa
atacgaacaaaaaagaatcaaatttaattatttgtttcctattgaaatta
tattagcgactagcgttagaatacggtaaattttcacgaaaaatattttg
caatggCTGTATGCCCAATCGCGCCCACAGgtaagttccaatttttaatt
attggGAAActggttcaccacgtggataaaaaacgtacagaatggaacct
gacagaaggttttcaaccagatttattcagataaagctataagaggttat
TCATTACtgtacttgtggattttaaaacctacataagctgacataagcaa
aaacgaaagttgatgggaaggaaagagtaaacgcaagacagaagatTTGG
TTGTGTTGGTCAGgcatgtttttattctatctgaACTAATATTATAAAAG
ACCAAGGAGGTCCCGACTGTTTCAaccagtgattcaagctttcatattat
ttctttctctaaagaagggtgtcggaattagacgagggatgtcaatatta
gaccaacttacggtaatccCTGTACTGTAACTCCTTCGCNAACCAAGGAG
GTCCTGACTGTTTCAaccagtgattcaagctttcatattatttctttctc
taaagaagggtgtcggaattagacgagggatgtcaatattagaccaactt
acggtaatccCTGTACTGTAACTCCTTCGCAGTTGTTTAACAAATTTCAA
CCAACGAGATTGCCGCATTTCACACGGCCCTTCTGTTTGGCACCTATGGC
CTCTTTGTGCCTTTCACGACGGGCaactgtaaaatcccacccttcataca
tttgtttcaatccgtgatccgtagcttaggttttttctcatcttcaattt
actgtaGAAAGtcggaatttgatgcgagagttagattatcagtgctgaaa
aaaatcattgaataaacgAAGAActtaaaaatcttatatattttcatttt
gaattgaagaataggtgcaaaaaagtgaaacatagaaaagtttcattttt
aattgcattaatcgaaatgggggattttgaacattttctatgtttagttt
tttgcactaGTACActcctgtaactatgggcgagcaccctgttgctaaga
tgttggcttgaaatcaaaaaatgacCGTAAAAAAATTcaccgtaatcttg
atatatgagtttaagtctatatatactgcctgtattttcactttacTTTT
atatctctttgacaacaaatttgttttaataattccaccaagtttatcaa
tcatactttcatGATAACTTTCTCTGATAGCACgtcctttttaatttttt
gttttcattcaaaaaatggCCAGACGCCGATTGGAAAATCAggttcactt
ttttgcaccaatccTTTAAAATAccaatatttaagatttttagtttgtct
tttattcaatgatttattACGCCACTTtattgacaatctaactcttgcat
cgAATTTGTAAACCTTTTGTCCTGttccaccatggttgggcgacaaagaa
aatttttgtccTCTAAACGTCCTAAATAGGTGGTTTCTTGCATCTTAGTA
GCCTATAAATTCTAACTTGATTATGAAAAAACTCAACTTTTACCTTCGAA
AATTATTTGTTAGACTCATTACCTTCATTTCTCTATCTTGCATTATTTAC
CTTtcacattttttctttataaaattgagtttttgccACCGAATAAcggt
ggtaaaaaagtgcttggaaGTTACCCTGTCTTGGCTTGATGAATTTTTCG
CGGACTTGCTTTTATCCTTCATTAGAAATAGTCTAGACcttaggatcacg
gattgaaacataTGTATAAAAGAGGTGTTGTGAAGGGtgatattatatat
tacatattACAGCCGCCCGTTgggcaaggcactgaaaggccatgGGCTCC
AAAAAGAAGGGCTGTGTGAAATGCAGCAATCTTATTGGTGGAAATTAAAT
AAACAGTCCGCAAAGGAGTGCCATAAAGCAACAATCGGTAGAAGAGACCT
TTCGTTTTTGCtgcagatttcaatataaacttcCCTCACAGACTGACAGA
CATTTtatcaatgtgttgtgtcaacttgtcagcattgtattgttgcaaat
ggaaagataaaagaggaaGACTAAGCTAGTTTACTAATTATCCTGATACA
GGAGTTTAAGTCTAGActgtcagtcatttgatggctacgCAAgtgtttcc
ctccactgatgcaagttacccgacttcacggtatttaatacttctttatt
tttcctttgttctttccTCTTACCAGGNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNCATCTACTCATCAAGAGGGTGTTCCCTgtctag
ttatttttgacatttgaaaatcattaaaaatcagttatcaagggtccccc
ttaattaattgtagaaaaaagtacaatgctcgccattatggatttaagGG
TGTTGCCATCTTCTTGAGGGTAgggctttttttttggtgaatcctgacat
gttcctggacctctgtgcaatatttcatctctacaccattttGTCTGGTT
GGGGTAGTTAtgtaattctacctgactatatgttcactgtattttgcaag
gaaagtatttcttttttaaatttcgctgCCTCTCTGAGTCAAGTCCAGAG
TACGCTTGAGCTgaggtgaaattttttttttaagtgaataTCTTGCATAT
AATATAGAAATGGGTTCNTACGCTTGAGCTgaggtgaaatttttttttta
agtgaataTCTTGTATATAATATAGAAATGGGTTCAGAATGGCCCAATCA
GCTGCGATGTTAGttatttctctttaaaaagacAAGGCAagtaattttcc
tttaaaaatacagaaATCAGACGTtagttattttccttcaaaaatacaag
actgAGATGAAGAAGGAAGGCAGGGAAACTGGTGAATTATACCCTAACCC
CCCCTGCTGGGAATTCTACAAAGTTTCAGGCTATATTTTTTTGGGTGCTG
GCAGGCATTATGGATGGAAAGAtccatgtcaaatttcaagctcGTACCTT
TCCTGGTTAGCTCACAAGTCGGCTATTACAAGAATACTAACCTTGAGGGT
GATCTAGTGGTCTTCAGTGGGAGCATTGTTTGCACGGGAGGTCGTtggta
gtccgacactttctagtccgacagtaaaaatgtccgacattggatttgac
gaatgcgtcagtattccgacaacaattttgtccgacaacgagtaaaaaaa
aaaatattcataaaacGAAATATAAATCGGCGAAGAGGGGGTtcatcttt
tataagcaaccacgtgcttataaaaatccaaagttcagACTTATTTGAAG
TTCGGCCCCTAAACcggacttttcttaaattttgggaagcttttTAGGAT
TAGGCTtccaagagtcaagaaattggattcagctgtttttacgacccttc
ttcTTTGATTaaagtttgtgttttaaaaccCTTGTAATTCTGAACAAGcg
aaaagggacccttaaaggtggtgcattctttttgttataaattatcttta
cgcaaatttgattggtcctttGTTTCTAATTATGTGAAAATGCCGCCAAA
ATGAAcatattaatattatctcagtgaaaaacccttattcaacattcgac
actctaaaatctttcgttttcggacaaaactGACGTCGGAGAAAAGACTT
Cttaattgtaaatttattttaaagattcggactattttactgtcggacta
gaaagtgtcggactagtgacatgcacccgttTGCACTCTTTGTGCTTTGT
GTCGCATTGTATAAAATCTGATTCTTTCTTTACCTTTTAGATATATATTA
AAGAGaaaaagtaaagaaagaaagaaagtatAGATGGACTTGCTGGATTT
TTCAGATGAAATTATTGAACAAATATTTCTTACCCAGAGAATCTCTCATC
AAGATTTGGGAAATATTTGTCAGGCATGCAAACGTTTAAATGAGATAGCA
TCCAGTAATGAATTATGGAAAGTTAAACTGTACAACAGGTAATGTAACCT
GGATTCCAAggtttttaactctttttttcttGTCAATTCGATTTTGTTTC
TGGATTGCCGAAAGGTCTCTGTTAATGGTTATTTCTCAGGATCTTATTGA
ATATTAAATGCACAGTCAACTTTAAAAAATAGTTGATTGCTGTTTGTTTG
CAGTGGAATAAAATCAGATTTTACAGCTGTGTacagggcccggttgttca
aaagtcgaTTAGATTAAATTCCAATTAGCGCTAATCGCGATTAGATTTcg
attatttatttatttttttattaaaggaTTGAGGTTCATGGCACGCCGTG
GGCCTCTAAGAACCTGTCTTTTTACAATTGCTTGttgttacaattttctt
tagGTAAACTTTTGTTCTGGGGGTTCCCCTGACtttaaattgaatatttt
tgtctttcatttgagcattGAGCTCATGTGCTCTCTTGCACAATTCTTTG
ATTGCCAATCGTTCAATAATTGTGAGGCCTTCTGTTACTCGATAGGATGA
AGGAGGACCTTTGTATGTCGTGATGGCTCTCAAGACTTTGTTCTTGTCTT
CTAGTTTTCGGACACTACCTTGATTGGTCGATACCTCCCTTCCTCCTCTC
TCTCTTCCGTGAATACTCCAATCCTCTGTGTGTTTATAAGTTTTATGTCC
TTGATACCCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCTCGATCTTTGTTTCTATCTTTTTCTCGAGTATGCTCATCTTTG
TTTCCaggctttctttgatttcttttgtaagaaaGTTCACATCATTTGAT
TTCAGTtggaaatttcttcattttgtactttcatgatgttttcacatgct
ttaatttccttttgaaGTCCTTCGATTTTGCTTTGGTGTTTTAGCATGTT
TCAACTCGTTCAATCAGCTCTGgcgtagcctggagatccatgctatgatt
ttttattctatatactgatggcgaaatatatagcatggtatgggctgaca
gtttgaatttcccatatcctaataacggttgaaaacacagccaatcaaat
cctgttattgtttcactggtcacactttcttaaagaaagcgcgagttccg
aaatttggtttttattttagtaagtgaggacagcgctaaattagaatttc
ccactgtaatttttttgaggccaaaatcagactcacagctctgacccgtc
aagtattcatcagattttaaaaaaaatacgcagaTAGGTTCCTGTCTAGC
TCTGGCGAGATCTTAACTCAACTTCGGCATTGAAAATTTCGAGATTTAAA
CGTTAAGCAAATCTGTATTTGGTAGATTGGTAGCTCAGAACAATCATACT
GAACATCTCGGTGGCACTTCCTACAGGTCAGAGTGTCTTTTGTCTTTTGG
TGTTGTTCCTTCTCTAATAATGCATTTTTCTGGGGTGCAAACCTCATTTT
TAAGCGGCAAttcttggtcattttcatcgattttttcctCCATTTTCCTG
GCGAGTTAATCACCAATTAGTTAATCCCTGTGATTAACTTCCGTTGTTCG
AACGTCAGATTAACTAATCGTGGACATTTTGcctgtgttttcaaaaatct
taatcttgacgtcatttttcgaatgttttcgttCAAATTTCTCACTTCTA
TGCAGCGACTTCACTTATTTTGTAGGAAAAAGCTTCTTAATCCTTGTTAA
TCCTGGGTCAGAGCAGGATTAAGATTTGGCTGATTTAATCGGAATTTAAT
CCAAATTTAAGCCTAATTTTTTCGAACAACCGACGGTTCTGTGCTAATCA
GCTCTAATCGAGATTTAATCGAAAATTAAGCTAATCGGCCTTTTGAACAA
CTGGGCCCAGGTGTATAGttgttaaaaaattttataatgCACGCTGTATC
AAATgtgcatttttttctttttcagatggCCTACTCAATGGGTCAGTATT
CCCAAAGAATCTTTCAGAGATGTATACAAAGAGAGAAGCGCAAATGACGC
AATGATAATGATTGAGTTACGGAAGATTATGAGAGGATCTTTCCATCTTA
GAAGTATTCCTCATAAACTCATGAAAGAAATTTCTAGAGTGAGTGTCTCT
GAAAGATCTTTTATCATTGATGGATTACTAGCAATCATTAACAATGCAGA
CCTGAAATATTTAAGGTATTCATCATTTTGGACACtaattttttaacctt
aaagGATCCAATTTAGGCAAGAACTAATTATTGCGAGCagcaaaaaagtt
ttaaactgAATTTGGGGATGTCTTGAAAAAACATGACAAAATGTAAATTT
GGtgagaaatttattttatttttgttattttggcagcatttttcaaaatt
agtttCCTTTTAAATATATTTCAAGATTTACATTGGTAAGGGCTACTAAT
TTTGCATTGTATAATATGTAGATAATATTCAAGATGTTGCCAAAGTTCAG
AGAAAATCTACCAAAATCCGAATTTGAAAATGGGATTATAACTTTTACCA
AACTATTCACAATCGTTATTACTTAATTCGTTAATCAAAGGGCAAGAAGA
CTTTgtgtctttttttcaaaattttatgtgcagaataaaaataatatgat
aaCAGGAAATTCTTAGGATGGACTTGGTATATTATGCAAGAAAAGTGTAC
GATTATGTAAGATGTCAAAAAGCAACTTCTAATTTGATGAATTGTGTCAC
TAGGGATGGTTTTCATGATCTATTTGAAGGTATGGTTTCTTTAATGATAA
AGCTCCAACTGGCTGCTTTTAGCACTTTATGAAAACTCTCAAAAGTTATA
ATTGGAAGTTTGTTGTGTCTTTGATTAAGAGATTTAACGTCAGCTATGTA
CTATGAAAGATTCTTCTTCAAACATCTGGCAAGGCGGAAAATGCTTTTTC
CACAATTTTGCACTAAGACATCTTGATTACCCAAAATTATTAAATTGTAG
TTTCCAACCATCCTAAAACTTGATGTAGTATACTTATATCTGGCTTGTTT
CCAAAAAGAACATATTATTCTGGAAATCATTTTGATAAGTCAATTTAGGT
TcagaattttttcatttttaagtttaaaattttcatcatttaaaaGCATT
TTCAATCATTTAAGGTATCAAATTTCTTGCCATTGGTCTTGAAGTAGATT
ATTTGGACAACATTCATCAAATTGAGGATTTAAAAAACATGTTTGACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064715-exon-scaffold_423-1491911889:37594..37743 | TCONS_00064715-exon-scaffold_423-1491911889:37594..37743 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1510915933:37594..37743 | TCONS_00064715-exon-scaffold_423-1510915933:37594..37743 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1575043694:37594..37743 | TCONS_00064715-exon-scaffold_423-1575043694:37594..37743 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1491911889:52119..52358 | TCONS_00064715-exon-scaffold_423-1491911889:52119..52358 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1510915933:52119..52358 | TCONS_00064715-exon-scaffold_423-1510915933:52119..52358 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1575043694:52119..52358 | TCONS_00064715-exon-scaffold_423-1575043694:52119..52358 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1491911889:52810..52922 | TCONS_00064715-exon-scaffold_423-1491911889:52810..52922 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1510915933:52810..52922 | TCONS_00064715-exon-scaffold_423-1510915933:52810..52922 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1575043694:52810..52922 | TCONS_00064715-exon-scaffold_423-1575043694:52810..52922 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1491911889:53308..53393 | TCONS_00064715-exon-scaffold_423-1491911889:53308..53393 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1510915933:53308..53393 | TCONS_00064715-exon-scaffold_423-1510915933:53308..53393 | Clytia hemisphaerica | exon |
TCONS_00064715-exon-scaffold_423-1575043694:53308..53393 | TCONS_00064715-exon-scaffold_423-1575043694:53308..53393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_423 | supercontig | scaffold_423:37594..53393 + |
Blast
The following BLAST results are available for this feature:
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