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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064714 ID=TCONS_00064714|Name=TCONS_00064714|organism=Clytia hemisphaerica|type=transcript|length=2812bpRun BLAST on NCBI protein sequence of TCONS_00064714-protein >TCONS_00064714-protein ID=TCONS_00064714-protein|Name=TCONS_00064714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp MDLLDFSDEIIEQIFLTQRISHQDLGNICQACKRLNEIASSNELWKVKLYRun BLAST on NCBI transcript from alignment at scaffold_423:37593..61367+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064714 ID=TCONS_00064714|Name=TCONS_00064714|organism=Clytia hemisphaerica|type=transcript|length=23775bp|location=Sequence derived from alignment at scaffold_423:37593..61367+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_423:37593..61367+ >TCONS_00064714 ID=TCONS_00064714|Name=TCONS_00064714|organism=Clytia hemisphaerica|type=CDS|length=23520bp|location=Sequence derived from alignment at scaffold_423:37593..61367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064714 vs. Swiss-Prot (Human)
Match: FBX21 (F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 4.692e-32 Identity = 151/525 (28.76%), Postives = 229/525 (43.62%), Query Frame = 3
Query: 435 IELRKIMRGSFHLR----SIPHKLMKEISRVSVSERSFIIDGLLAIINNADLKYLRMDLVYYARKVYDYVRCQKATSNLMNCVTR-DGFHDLFEGIKFLAIGLEVDYLDNIHQIEDLKNMFDE------KVLGTKEYEYPSMSTQ----------EDIKRILWMFNDFLLKDGTFAQKAF------------LLMSDTDRKFSSSALKCCFYITLARKLGLDVNAVRIDDTSA-RKSQFFTSIKPSIGDTIYIE-FRSGMLKMVDEQSNLL-----ARLKATENATKKDIFVCLLHDVIEFYKHGGQISGRQIQKIQWLIETLLQLSPTEDESRLFLTRIYLHQNS----------NIDETLEHLTYL--ISHGNLPSEPIHQLLTVTKRLXXXXXXXXXTQPKLRSSTEDNQKVVYKIGMIMRHRRLGYMCVIYGWDNFCDMPYNWQRQMGVLDMLNGPNQPFYNVMVNDGSNRYAAQESLMMHANPGEIAHEEIGKYFCSIINSCYYKPTEMLNEMYPEDCDW 1853
+E RKI+ SF R +P +I + E F D L+ I+N K L YYA+K+ Y+R QK +NL + + D + EG + I + L +I ++D++ D K L +PS++ + E ++L N L F +L+ T S S L Y+T+AR+LG+ + V R Q I D IYI+ F G V E L+ A L N K + ++ +++ K G Q+ + ++ L + P + + L R+Y H + + L+H+ L HG + H L + ++ K E + KLRS E ++ V Y IG+IM+H+R GY CVIYGWD C M + W R M V + +G +QPFYNV+V DGS RYAAQE+L + P EI+H ++G+YF S +Y P L YPED ++
Sbjct: 108 LEARKIV-ASFSKRFFSEHVPCNGFSDIENLEGPE-IFFEDELVCILNMEGRKALTWK--YYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVY--IDQYCNPLSDI-SLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLL----YLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKK--VLQRMVGNLLSLGKREGIDQSYQLLRDS--LDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERK-----KEEVGVEVKLRSD-EKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYF-SEFTGTHYIPNAELEIRYPEDLEF 610 The following BLAST results are available for this feature:
BLAST of TCONS_00064714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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