TCONS_00064704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064704
Unique NameTCONS_00064704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064704 ID=TCONS_00064704|Name=TCONS_00064704|organism=Clytia hemisphaerica|type=transcript|length=1772bp
CACGACATGAAGGGGCCGATGGAGCAGGTCCCAGTGGATTGCATTCTGCT
TCTAGCTCTCTTCTTGAACTTACAGTTCGGGGTCGAGGTCGGGGACGCGG
AGGTCGCCATTCATCGCATCGCTGTCCCATCTGCTTATTGTTGTTTCCAA
GCCGAATGACCATGATCGAACACAAGAGAAAACATACCAAAGTACACAAA
TGTAAAATTTGCAATGAAGGTTTTTACACGGAAGACCGTCTAGAGAAACA
TGCAACCAAAGAAACACACAGTCACCCTTGTGACCAGTGCGAGCGGTCGT
ACGTCAACAAACAATCGCTCATGCGTCACAAATTATCTCACTCTGAGAAA
ACACACAAATGTGATCAATGTTCGCGCGCATTCAAAACACCGCGTGAACT
CNTCTCACTCTGAGAAAACACACAAATGTGATCAATGTTCACGCGCATTC
AAAACACCGCGCGAACTTAAATACCACGTCGAAGGAATGCACTCTTTATC
ACGTGATTTCGTTTGTGACGTTTGCCAAAAAGGATTTTCACGGCCGGAGA
AATTGAAACGCCATCTGATGATCCACGCCCCAGACCGCCCTGTTTACACG
TGTCCATTCAAGAACCACGTCGGCTGCGATAAGACATTCTATAGAAAAGA
CAAATTGACCAGACATTTATATTCACACTCGAAAGTCAAACCTTTCAAGT
GTGACCAATGTGATAAATCGTTCGCCCGCACGGATAATTTGAGAGAACAC
ATACGCTCTCACACAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAAA
AGGACAACCAGGACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCACA
ACGTAGAGAATGCAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGAA
CCACTCATTCAACAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCCG
CTTAGTCCGTGCGGCCAATAATGTTAAGAAAGACCAAGGAAAGAAAGTTC
GCAAGGAGAATATCGAGACGACGGAGATTCCGTTAGATGGAGCGGTTGCC
ATAGCAGCAGGGTTGAACCCGATGATCCAATCAACGCTCATGCCCAGTCC
CACGCAAAATGTGACGTCAGAACAACAACAAGCCTTTGTAGCAGCTGCTT
CAAGAGGAAACATCGAAACTCTATACACCATCAGTCACACCGGTCAAGGT
TCCGGTTCTCCGCAATTTCAAATCAGTCGGGCACAAGACACGATGGTACG
TAACGAACAACTACTACGTGAACAATTGGCACGTGAAGGTCTCACAACTC
GAGAGGTTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTACAGGACGC
GATTCAACGCAAACGGCAGCCGCTGACGCAACCACAACGGAACGTCTCCA
AGAAGTCATAACAAGGCAACTGGCAGAATCGGCCGCAGCGACGCAACAGG
GCCGTGAACTGGAAGAACCCACCATCTCTATGACGGTAGACCAAGACGGT
AACATTACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAGGGAGTCCT
CCCAGGACAGCTAGCAGGACAATTACAATTCACGACGCTCTTGAATTCTG
ACATTATAGCGATCGGCGAGGACGTGATACGACAGAATCGGAACGGTGTG
CTACCAGCTATGTTTCAACAGAAATTTGGAAACTAGTTAACCGTATTATC
TTCCCCGTGGGCAAAACTGAGGTATTTCATGTTTAATATGACCAAGGGAA
CGATTGTTTTCAAAGTTTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00064704-protein

>TCONS_00064704-protein ID=TCONS_00064704-protein|Name=TCONS_00064704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MQPKKHTVTLVTSASGRTSTNNRSCVTNYLTLRKHTNVINVRAHSKHRVN
XSHSEKTHKCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPE
KLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFK
CDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKGQPGPKKFLQHMLKQH
NVENAEIPRPFDDAAPEPLIQQHKAVIEAEAAARLVRAANNVKKDQGKKV
RKENIETTEIPLDGAVAIAAGLNPMIQSTLMPSPTQNVTSEQQQAFVAAA
SRGNIETLYTISHTGQGSGSPQFQISRAQDTMVRNEQLLREQLAREGLTT
REVAITSAGAATGATGRDSTQTAAADATTTERLQEVITRQLAESAAATQQ
GRELEEPTISMTVDQDGNITTSGRGLHLLSQGVLPGQLAGQLQFTTLLNS
DIIAIGEDVIRQNRNGVLPAMFQQKFGN
Run BLAST on NCBI

transcript from alignment at scaffold_421:138539..147966-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064704 ID=TCONS_00064704|Name=TCONS_00064704|organism=Clytia hemisphaerica|type=transcript|length=9428bp|location=Sequence derived from alignment at scaffold_421:138539..147966- (Clytia hemisphaerica)
CACGACATGAAGGGGCCGATGGAGCAGGTCCCAGTGGATTGCATTCTGCT
TCTAGCTCTCTTCTTGAACTTACAGGTACAAATTGTCAAGCGCATCCCGT
TTTTCATTTTACTTTTGTAGAGAAGTTCAAACCTCTCCCACTTCACTTGA
GAAACTGTTTACCAAAGTAACCAAAAAAGTAACTAGTATATGCCTGTTCT
TGCCATTTCTACCTTAATGGAGATTAAAAATGAACCTTTGGATGTGACTA
AGCCTCGGCGTTTCGACCGGAATGATAGTGACTTTTTGTTCAGCCTCCGA
AAATCAAGTCCTTTAAAGGGTCGAAAAGTTCTTGGAATTTTGACTAAGTT
TTGATATCTTTGCTGAAATTATTGAAGAATATAGTTCTAAAAACCTCAAT
CTCTCTACTAACGGTCGATATTTGAACTTTTGCCCGTTCATATCCGTCAT
CTCGTTTATCTAGTACTACTACCTCCCAAGATTAGATAAGATATGCAGTG
TTGCAACTTTTCTGTCTGTTGACAAAAATCCATCCAGGGGAGTTTTTCAT
TAGAATTTTTGTCTCAATTGTAAGCTTTGGAAGAACGTAATTTTGTAAAT
TTTTTGTTTGATGTTTAAAACTTTCGTTTAAATTCAATAAAAGTTATTTG
CAACACTTGATAAGATTATAAATAAGATATCAGATAAACGTGGACAATTA
TATTTATGCTTTTAACTTTAGTTCGGGGTCGAGGTCGGGGACGCGGAGGT
CGCCATTCATCGCATCGCTGTCCCATCTGCTTATTGTTGTTTCCAAGCCG
AATGACCATGATCGAACACAAGAGAAAACATACCAAAGTACACAAATGTA
AAATTTGCAATGAAGGTAATATCTTATTTCCTTTTTCGTTTGTCACAGCA
ATTTTGCATCGTAATCGTGGACACCGTGGCAATCGTATTACTCTCCGTCA
ATATGATAGAAATAGAACTGGTTGTTGAAAAGGTCTTGTGTCGCCCTCAC
TAGCTCACGCTACACTTTGACGTCGATCAAGATTTTACAGTATTGCTCTT
TAAAATTATTTAAACATTTAGTTTAGGGTTAGAGAAATCGGTTCTAATAC
TCCGAAACATTCGGAAGCTTTGGTACTCTCATTCGTCTTGTAGTCACGCC
TTAAACATTTTGAATAAACGACGTTTAGCTTCAGGGGGGGGGGGTCAGGA
TCCAGATACCAAACCCAGGGCCGGGGGTGGTGTCAATTTTTTTTTCAAAT
TTCAAAAAGTCAAGTTGGTATCGATTCCAAAATGAGGGGGTGGGTCCCCC
TTTTTTTGAAAATAAGGGAATTTTTAAGTTGGTATCGACACCAAAATGAG
GGGGTGGGTCCCCCTTTTTTTAATTTTTGCTGAATTTGAAATCGGTATCT
GACTTAAAATGCTGTATAATGTAAGTATAAAAACTTATTTGAATCATTCT
TCATTCTATAATTGAAATTAAATTAAATTGAAATTAAATTTTTATTTAAC
TTTTGCTGCTCTCAATTCTTTCAATCAACCAAAATTCATTCAAAACTAGA
GTTGAACAAAGTGAATCAAGTCTTAACAGATCTTTTTTCTGTATCTAACG
TTAATCATACATAGGCTATGTTACAAAGACTCTAGGTGTGCCTAATACAA
TAAGTTTTTTATCTAGTCTAGTTTATCAACTAATTTTATGAATTTGATAC
ATTTTGCCAATATAGTTCAAGAAACTTAATTTACGTTGTATCAGAATGAG
AAAAACTTGTTTTAATTTTCAGGAGTCTAAAGTGTGGTACATAGTATAAT
TAAGTGATTAATCAGGATTAATAAGAGGAATATTCTTTGAATAAAAACAT
TCACAGATTTGTTTAGCATCCCTTGTATGCAGTATCCTATGCATATAACT
TCTTGCATTTTTACTGATTGCCAATTTAGGGGGGTGGGTCCCCCTTTTTC
AGAAAAATCAGGATTTTCAAGTTCGTATCGATACCAATTTAGGGGGGTGG
GTCCCCGCTTTTTTAGAAAATTGGGGTTTTCAAGTTGGTATTGATACCAA
TTTAGGGGGTGGTGGTGTCTACTACTTTTAAATCTCGAAAAGTCAGGTTT
TTGGGCCCTGGGTTGGTATCCTGGACCCTGACCCCCCTGTTAGCTTACAT
CTGTATATAGTAGTGGACTCGTGATCAGTAACTATGTTTTATTTTCTTAC
AGGTTTTTACACGGAAGACCGTCTAGAGAAACATGCAACCAAAGAAACAC
ACAGTCACCCTTGTGACCAGTGCGAGCGGTCGTACGTCAACAAACAATCG
CTCATGCGTCACAAATTATCTCACTCTGAGAAAACACACAAATGTGATCA
ATGTTCGCGCGCATTCAAAACACCGCGTGAACTCNTCTCACTCTGAGAAA
ACACACAAATGTGATCAATGTTCACGCGCATTCAAAACACCGCGCGAACT
TAAATACCACGTCGAAGGAATGCACTCTTTATCACGTGATTTCGTTTGTG
ACGTTTGCCAAAAAGGATTTTCACGGCCGGAGAAATTGAAACGCCATCTG
ATGATCCACGCCCCAGACCGCCCTGTTTACACGTGTCCATTCAAGAACCA
CGTCGGCTGCGATAAGACATTCTATAGAAAAGACAAATTGACCAGACATT
TATATTCACACTCGAAAGTCAAACCTTTCAAGTGTGACCAATGTGATAAA
TCGTTCGCCCGCACGGATAATTTGAGAGAACACATACGCTCTCACACAGG
TAAGGAGAAATACTTGAATTCATTTTGGAAGACCATGACGAATATTGCTT
TTAGAAAACTCGAATTCTCTTCCGAGGAAGACTATCGTTTTCCATATCGT
TTTAAAGAAAAAGAAAGTGATGTTTAGTTAAATTCAACCTGTACCATTAC
AGCATTGATATTCGAGACCAAGGAACTTTAATAAAACAGTAAATCTCTTT
ATTTAAGATTCTTGCTGAGACTGACTTTTTCTTGTTTTGCGGAACTTTTT
TTGAAATACTTGAATTAAAGCCATGCCACCAAAGTTCAACTTTTTCAATC
TCTACACAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAAAAGGACAA
CCAGGACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCACAACGTAGA
GAATGCAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGAACCACTCA
TTCAACAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCCGCTTAGTC
CGTGCGGCCAATAATGTTAAGAAAGACCAAGGAAAGGTTTGACATGTTCA
ATTGTTTAAAAGTTTCGTTAGAGGTGTCTGTCGGAGTGTTATTATTTTTC
TCAAAATCTTCTACAAATGACATGAACAGGTACAAAAAATATTGAAAAAC
TTCAGAAAAGTCGAAATAATTTAATAAAATATGCCCTTTTACTTAAGGTT
GTATGCATTCAAAGTAAATAACACGATTAACTTTTCAGAGATAATTAGAT
TTCTGTCCGATTTCGAATCAGCGAGAATTGACTGGAACACAGTACGTAGA
ACCATAGAACACATAGATTTATCATTTTCTGACTGGTTTTTCTTCCACCT
CAATAGAAAGTTCGCAAGGAGAATATCGAGACGACGGAGATTCCGTTAGA
TGGAGCGGTTGCCATAGCAGCAGGGTTGAACCCGATGATCCAATCAACGC
TCATGCCCAGTCCCACGCAAAATGTGACGTCAGAACAACAACAAGCCTTT
GTAGCAGCTGCTTCAAGAGGTATGTTTTATTCTTAAAAACCAACGGTAAA
TTCAAGGTCATAGTAAACAGAGAGTATCTATGAATTTAACTATATTTTTA
TATGTCTATTCTCCTGTTTTATATAATATACCTACTTAAAGAAATTCGCT
AACCTATATACAACTTTCTACATCTCAATCTTCTTCTAAAACTTATTTTT
CTGCGAAAAACATAATATTCGCTTCAAGCATATTGATTTGAAAAGTTTCT
CGGATTAATTCCCCCAAGACGTACAAAAGCCCCATGTTCTATATTTCAAA
CAACCAGGAAAAGGCTTATGTCTATGCAATCTTTAAATGTTAAGTTATTA
TTCTTAATCCTTAGGAAACATCGAAACTCTATACACCATCAGTCACACCG
GTCAAGGTTCCGGTTCTCCGCAATTTCAAATCAGTCGGGCACAAGACACG
ATGGTACGTAACGAACAACTACTACGTGAACAATTGGCACGTGAAGGTCT
CACAACTCGAGAGGTTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTA
CAGGACGCGATTCAACGCAAACGGCAGCCGCTGACGCAACCACAACGGAA
CGTCTCCAAGAAGTCATAACAAGGCAACTGGCAGAATCGGCCGCAGCGAC
GCAACAGGGCCGTGAACTGGAAGAACCCACCATCTCTATGACGGTAGACC
AAGACGGTAACATTACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAG
GGAGTCCTCCCAGGACAGCTAGCAGGACAATTACAATTCACGACGCTCTT
GAATTCTGACATTATAGCGATCGGCGAGGACGTGATACGACAGAATCGGA
ACGGTGTGCTACCAGCTATGTTTCAACAGAAATTTGGAAACTAGTTAACC
GTATTATCTTCCCCGTGGTATGATTCTTTCTTCATTGTTATTAAGTTGGC
AACTGGAAAGAACCACTGTCGGTTGGCTATGTACTTGCAGTGACTTTGCT
CGCCTAGATCTGATATAGGTCTGTGGCAGGGCTTACAATTGACACCGCAT
ATGACATTAAACTATTGTCGTTTGTGCAACTAATTGGAAATTTTAGTTTT
ATATGGATGAACTAATCGTGTTTTTTAATTCATATTTAGAGTTCACATGT
TTTCATGAGATTTATGAGAGTAATTTAAAGAGGTGAAGTGTTTCTTCATT
TTTGCCTCTTAAGAGATGGCTTCCGTACCTTCAATCCCCCAAAAAATATA
CATCATAGTTTTTAAGCAATTCTAAACTCTTTTGAAAGATCACAATCCAT
CCCACCCCACTGTCAATGTTGAGTCTGAAACTGAACCATGGGCCACGCAC
TTTTTTTGCAGACCATGCCATACTTTTTTTAATAGCTACTATTTTAAGCC
ATAAAAAAAGCCATAAAAACTATTATTCTCCCCAATTAGATAAACGTTTT
AAGGTGTTTTGAGCGTGTAAAAAGTGAAAAGATTTCTTCATCGCCCAACC
ATGGCGGGCGACAATTTTTCCAAAATGTTCCCCCCCCCCCCCACTCAAAA
TAGCTCGCCGGGGCCTATGTCAACGCTGACAGTAGGGGATGGGGGACGAC
CTCTGGTGTCTCATAATTCAATTAGGGGATTTTCGGAAGAGAAAATAAAT
TCTTAAGAAAGTTTGACTAACGAAAAAATCGAAAAAAGTTCACTTGATGG
CTCTATTAAAATATTCCAATTTTATGGGAAGGTTTCCAATTCTCGCTCGA
ATATTTCAACGGGAATCAGGGAATTTAGCTTCCCTATGGGATTTAATAAA
CTTTTTGCTTTTTTTGGTTTTCGAGTCGAAGTTCGACAATATAATTTAAA
AATTCAACACCGTCTAAATTGAAAGTGCTTTCAATTTTCACTGGATTTAC
TTATTTTTTATCTGCAAACTTAAAATACAGTACTTTATTTATTTTACAAG
TGGAAGATCTATTAGTTATTACTTTGTTTCTTAGTATTTTTAATCATAAT
TTTTTTAAGTCAGAAATAACGACGTGCAAATTGAAAATAAATACTATTCT
GAATTTAGATTTTAGATTCTTTATTTAAATACGTCATGCAAAAAAATTAA
GTTTTAGAAGACATTAATTTTCATAGAAATGTAGATTCCAAGCTGATTTT
GGACTTATTGTGGAGTTAATCAGAAAAATATGAATATTAAGAACAATTTA
ATCTTTAATTAAGAACTCTAATAAGAACAACCGAACCTCGGCTCTAATTT
ACTGGGGCTTCTTAAAGGAAGATTTAGATTCAACTACTGGTACAGTGGAT
TCGCCATAACTCGAACGCGCACGGGGGAACACAAATTTGTTCAAATTATG
GAAATTTCGAGTTATGGGGTGAAGGGACCAGAAAACTAGTTCGAGCTAAG
GAATCATTTTAGTTATAGAGGTTCACTGTATCATTTTTTATTGGCTAGAG
GATTGTGACGCACAAGACAAGTTGAAACTTCCAGCCGCCAGATTGAATAT
TTAGTTTTTTTCTTCTCCTGAACTATGGATGGAAACATTTCGAAATTTTC
CCTAACCTAAAAAGAACCTCATTGAAACATAAAAAGAAATGAACAGAAGA
CAAATTACCGTAATCGACATTCTCAAAAGAAACTCTTGTTTTTGAATGAA
AAATGTCCCTCTCTACTTAAAAAAAAAACAAAATCAATTTTTTCCAAGAG
GAGAAAAGTTTGTTGGGACCCGATTTGATGTTCAAAAGTCCACTGTTTTG
TCTAGAAACATTTAAGTGTTTTGGTTGATTTTTATTAATCTTGTGTCATC
TAAGCCGAATATGTTGAAATCACTAACTGCATGCTCTTTCAGGTAATTCG
ATTTTCGAATAAATGTGAATGGAAAGATTTCAGTTGACGCCTGCTTATGT
GAACAATCTTATGTCCAGGTTGATACGCCATTCCATTCCTTCTTTTTAAT
AATAGCTATCAACATGCTATCAACAGTTATAATTTTCTGAACTGTTTGGC
TGTCTTTATATACCTCCATTTTTAAGTAGCCTGAAGACTTCAAAGTGGGT
TGGATTTGGGTTCAAAATTCGATAAAATTATATTATTGATAGGGTGGTGC
CTGGAGACTTAAGTTTCGAGATCTTTGGAAACCTCGAATATATTCGGATA
TGGCTGTTCCGTTGGCTGTTTTATTCACAAACATTTGACGTTTTGGATAA
GTTTTTGCTACTACTCCAGTCCTTGTTTAGAAGAAAGAAACAGATGCTTT
TTCTTTTCTACAGCTTAAAACCCTTCTTTATGACAAACCTTTTCCACAGG
TTTCTTTTAAGAGCCCCATTCATGCAATCACGCAACCCCCAGGTCAGGTC
AAGCAACCTCTTCTCAGACCCAATGGGACCCCTTCCAACTGTAAAAATTG
ATCAAAATATCGTCCCCATTGGAACATTATACTCTAATTTTTGTCTCCGC
TAAAAATAATGAGATATGCAATTCCTCACCTGCGAATGTTATGCTATTTT
TTCCATCCCACTGAATTTTCTGACTTGAAAACAATGGAATTCAAATCCCC
AACCATAAAAAAACATAAACCAATCCCCATGAAGTTTTGGTCCGTTATTT
TTACCCCCCACTGGCTGAAAACATCCTACCGGGTCTGTGATCAAGGCAAC
CTCTATATCGGCTTTTTGATGCTTTGATAGACAATTCTCTGGCTTCAATC
CGTCTTTGCTTGGATACCCAGCTGGCACACAACGTTGTTTCAACGTTCAC
CTAACGTTATATGGATGTTGTGAACGTTAGATAAACGTTGAATGTTGGAT
ATGGTACAGTAAGATGCGCGTTTAAAACTTTCCCAGAAATGGAAAGAAGG
GTGACAGCTCGGTAGTTGCCTGGGCTTTCTCTGCTGTATTTTTTAAAGAT
TGGTCTAATAATCATTTTGATGAAGTGGGTTGGAGTGTCTGTTGAGTTCA
GGATTTTATCAAATATAATCTTCAGCATATCAATTACTGTGTCTCCTCCT
GTTTTCAGCACCTCTGGTGTGATGCTGTCGGACCCAGGGGCTTTGTTGTT
TTTTAGTGAAGTGATTGCTTTCGAAAATCTTTTGATATTGAAAACTCGTT
GTCTTTGGTATCGGCAGAAGGGTCGTTACCCGGGGGGGGACTAGGGTTGC
GAGCTGACGGGGGGTGCCGCCCGACTTTCGAACTTTGGACCCTTACCGGG
ACTAAAAAGGAGAAAACAAAAGAAAATTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGGGGGGGGGGGGTACTAGGGTTACGAGCTGACGGG
GGGTGCCGCCCCCGACTTTCGAACTTTGGACCCTTACCGGGACTAAAAAG
GAGAAAACAAAAGAAAATTTTGGGAATTTTACGACCATTAGCGGGACAAA
TTTGACCAATTTTGACCAAATTTCGATCTTTCAGGGGGTAAAAAGTTGAA
ATTTTCCTATTTTTCCGTCCCTTAGTGGGACTGAAATTTGATTTTCTGAT
TTTTCCGACCCTTACCGGGACTTTGGAAATCCAAAGAAGGTACCCTTAAG
GGCGGCACATAGCACATACCGTACCCTCCATTTGCCTAAGTAACCCTCCC
CCTGGGGTCGTTATAAGAAGTATATCTATAGAGGTCTGGCTATTCAGACT
ACTTTACCTCCTTTTGGCAAGTTTTGTCTTTATACTTTGCAATAAATAAA
CTGCAGTATGGTCTATGATGTGTTTTTGGAATATCCTGGACTTGTTTTTT
AAGATGTTTTTCAGTATTTCAATTTCATAGGATGTTCTCTCAGATCAAAG
AGAATTTTCAATTCATAAGTGTTAACAGTTAATATAGTGGGAAGAATTTT
CATTTGTTCTTGAGAAAGATAAGAAAACTTGTTTTTCTTTAAGGGAGATT
TTATTTTTCCTGTAATACATAAGTGATGACACCCACGCTAGGTGTCGTAC
TTTAAAATTTAAAATTGTGTTGTGACACTTTTTCACCTAAGTCCCAATAA
ATAAATCATAAATCTTCCTTAAAAAACAGAGTAACAAACATCATAATATC
TGTATACGTTTTTACGGTAAAGAGGATTGGGTTGCATGCAGTAGTATATT
TTGCTTCTCGTAGCGTAGTAATTCCTGATATTCATGACGTAATATTTTAA
ACGGAAACACCCGAGAAATATGTTTTTTTTGCGTGTGTATAAAAAGATTA
CGTCTAGTATCAAGATTCAATGTACACTTTCTTGTCTACGTTGCCGATAA
TTTTTCCTGAAGAGAAATCCAATAGTCTGAATCGCAGAACTCTACATATA
TAATTCTTATATCTACCAAAACAATAAACAGTAAAACAAACCAACAAATT
AAAGTCGAAAGGAATTTAAAACTTTAAAATTTTGTGATATTTCGACACTT
ATCACGCGTCTATACTTCTTATATCTATAAGAAACTCTATTCGCTAGAGG
ATGAGCAGAAGCCTACTGCGAACTTGGTTTTGAAACACAAACAATAGAAA
CACAACCTTTGTGCTCTTTTTTTATATGAACCAGTAAATTCTTAATGAGC
CTCAGTGAGTCTCATTTTTGCACTCCAAGTCTAAAATTCTTCTTATCCTA
TTCTTATTTCTTTAGGGCAAAACTGAGGTATTTCATGTTTAATATGACCA
AGGGAACGATTGTTTTCAAAGTTTGGAG

Coding sequence (CDS) from alignment at scaffold_421:138539..147966-

>TCONS_00064704 ID=TCONS_00064704|Name=TCONS_00064704|organism=Clytia hemisphaerica|type=CDS|length=5748bp|location=Sequence derived from alignment at scaffold_421:138539..147966- (Clytia hemisphaerica)
GAAACATCGAAACTCTATACACCATCAGTCACACCGGTCAAGGTTCCGGT
TCTCCGCAATTTCAAATCAGTCGGGCACAAGACACGATGGTACGTAACGA
ACAACTACTACGTGAACAATTGGCACGTGAAGGTCTCACAACTCGAGAGG
TTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTACAGGACGCGATTCA
ACGCAAACGGCAGCCGCTGACGCAACCACAACGGAACGTCTCCAAGAAGT
CATAACAAGGCAACTGGCAGAATCGGCCGCAGCGACGCAACAGGGCCGTG
AACTGGAAGAACCCACCATCTCTATGACGGTAGACCAAGACGGTAACATT
ACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAGGGAGTCCTCCCAGG
ACAGCTAGCAGGACAATTACAATTCACGACGCTCTTGAATTCTGACATTA
TAGCGATCGGCGAGGACGTGATACGACAGAATCGGAACGGTGTGCTACCA
GCTATGTTTCAACAGAAATTTGGAAACTAGAAAGTTCGCAAGGAGAATAT
CGAGACGACGGAGATTCCGTTAGATGGAGCGGTTGCCATAGCAGCAGGGT
TGAACCCGATGATCCAATCAACGCTCATGCCCAGTCCCACGCAAAATGTG
ACGTCAGAACAACAACAAGCCTTTGTAGCAGCTGCTTCAAGAGGTGTGTT
CCGTTATTATTGTACTGTGTGCGGAAAAGGACAACCAGGACCCAAGAAAT
TTCTTCAACACATGCTCAAGCAGCACAACGTAGAGAATGCAGAAATACCA
CGCCCCTTTGACGATGCAGCTCCTGAACCACTCATTCAACAACACAAAGC
TGTCATTGAAGCTGAAGCTGCCGCCCGCTTAGTCCGTGCGGCCAATAATG
TTAAGAAAGACCAAGGAAAGATGCAACCAAAGAAACACACAGTCACCCTT
GTGACCAGTGCGAGCGGTCGTACGTCAACAAACAATCGCTCATGCGTCAC
AAATTATCTCACTCTGAGAAAACACACAAATGTGATCAATGTTCGCGCGC
ATTCAAAACACCGCGTGAACTCNTCTCACTCTGAGAAAACACACAAATGT
GATCAATGTTCACGCGCATTCAAAACACCGCGCGAACTTAAATACCACGT
CGAAGGAATGCACTCTTTATCACGTGATTTCGTTTGTGACGTTTGCCAAA
AAGGATTTTCACGGCCGGAGAAATTGAAACGCCATCTGATGATCCACGCC
CCAGACCGCCCTGTTTACACGTGTCCATTCAAGAACCACGTCGGCTGCGA
TAAGACATTCTATAGAAAAGACAAATTGACCAGACATTTATATTCACACT
CGAAAGTCAAACCTTTCAAGTGTGACCAATGTGATAAATCGTTCGCCCGC
ACGGATAATTTGAGAGAACACATACGCTCTCACACAGGAAACATCGAAAC
TCTATACACCATCAGTCACACCGGTCAAGGTTCCGGTTCTCCGCAATTTC
AAATCAGTCGGGCACAAGACACGATGGTACGTAACGAACAACTACTACGT
GAACAATTGGCACGTGAAGGTCTCACAACTCGAGAGGTTGCTATAACGTC
TGCCGGAGCTGCAACTGGAGCTACAGGACGCGATTCAACGCAAACGGCAG
CCGCTGACGCAACCACAACGGAACGTCTCCAAGAAGTCATAACAAGGCAA
CTGGCAGAATCGGCCGCAGCGACGCAACAGGGCCGTGAACTGGAAGAACC
CACCATCTCTATGACGGTAGACCAAGACGGTAACATTACAACATCAGGGC
GTGGTCTTCATCTTCTATCCCAGGGAGTCCTCCCAGGACAGCTAGCAGGA
CAATTACAATTCACGACGCTCTTGAATTCTGACATTATAGCGATCGGCGA
GGACGTGATACGACAGAATCGGAACGGTGTGCTACCAGCTATGTTTCAAC
AGAAATTTGGAAACTAGAAAGTTCGCAAGGAGAATATCGAGACGACGGAG
ATTCCGTTAGATGGAGCGGTTGCCATAGCAGCAGGGTTGAACCCGATGAT
CCAATCAACGCTCATGCCCAGTCCCACGCAAAATGTGACGTCAGAACAAC
AACAAGCCTTTGTAGCAGCTGCTTCAAGAGGTGTGTTCCGTTATTATTGT
ACTGTGTGCGGAAAAGGACAACCAGGACCCAAGAAATTTCTTCAACACAT
GCTCAAGCAGCACAACGTAGAGAATGCAGAAATACCACGCCCCTTTGACG
ATGCAGCTCCTGAACCACTCATTCAACAACACAAAGCTGTCATTGAAGCT
GAAGCTGCCGCCCGCTTAGTCCGTGCGGCCAATAATGTTAAGAAAGACCA
AGGAAAGATGCAACCAAAGAAACACACAGTCACCCTTGTGACCAGTGCGA
GCGGTCGTACGTCAACAAACAATCGCTCATGCGTCACAAATTATCTCACT
CTGAGAAAACACACAAATGTGATCAATGTTCGCGCGCATTCAAAACACCG
CGTGAACTCNTCTCACTCTGAGAAAACACACAAATGTGATCAATGTTCAC
GCGCATTCAAAACACCGCGCGAACTTAAATACCACGTCGAAGGAATGCAC
TCTTTATCACGTGATTTCGTTTGTGACGTTTGCCAAAAAGGATTTTCACG
GCCGGAGAAATTGAAACGCCATCTGATGATCCACGCCCCAGACCGCCCTG
TTTACACGTGTCCATTCAAGAACCACGTCGGCTGCGATAAGACATTCTAT
AGAAAAGACAAATTGACCAGACATTTATATTCACACTCGAAAGTCAAACC
TTTCAAGTGTGACCAATGTGATAAATCGTTCGCCCGCACGGATAATTTGA
GAGAACACATACGCTCTCACACAGGAAACATCGAAACTCTATACACCATC
AGTCACACCGGTCAAGGTTCCGGTTCTCCGCAATTTCAAATCAGTCGGGC
ACAAGACACGATGGTACGTAACGAACAACTACTACGTGAACAATTGGCAC
GTGAAGGTCTCACAACTCGAGAGGTTGCTATAACGTCTGCCGGAGCTGCA
ACTGGAGCTACAGGACGCGATTCAACGCAAACGGCAGCCGCTGACGCAAC
CACAACGGAACGTCTCCAAGAAGTCATAACAAGGCAACTGGCAGAATCGG
CCGCAGCGACGCAACAGGGCCGTGAACTGGAAGAACCCACCATCTCTATG
ACGGTAGACCAAGACGGTAACATTACAACATCAGGGCGTGGTCTTCATCT
TCTATCCCAGGGAGTCCTCCCAGGACAGCTAGCAGGACAATTACAATTCA
CGACGCTCTTGAATTCTGACATTATAGCGATCGGCGAGGACGTGATACGA
CAGAATCGGAACGGTGTGCTACCAGCTATGTTTCAACAGAAATTTGGAAA
CTAGAAAGTTCGCAAGGAGAATATCGAGACGACGGAGATTCCGTTAGATG
GAGCGGTTGCCATAGCAGCAGGGTTGAACCCGATGATCCAATCAACGCTC
ATGCCCAGTCCCACGCAAAATGTGACGTCAGAACAACAACAAGCCTTTGT
AGCAGCTGCTTCAAGAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAA
AAGGACAACCAGGACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCAC
AACGTAGAGAATGCAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGA
ACCACTCATTCAACAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCC
GCTTAGTCCGTGCGGCCAATAATGTTAAGAAAGACCAAGGAAAGATGCAA
CCAAAGAAACACACAGTCACCCTTGTGACCAGTGCGAGCGGTCGTACGTC
AACAAACAATCGCTCATGCGTCACAAATTATCTCACTCTGAGAAAACACA
CAAATGTGATCAATGTTCGCGCGCATTCAAAACACCGCGTGAACTCNTCT
CACTCTGAGAAAACACACAAATGTGATCAATGTTCACGCGCATTCAAAAC
ACCGCGCGAACTTAAATACCACGTCGAAGGAATGCACTCTTTATCACGTG
ATTTCGTTTGTGACGTTTGCCAAAAAGGATTTTCACGGCCGGAGAAATTG
AAACGCCATCTGATGATCCACGCCCCAGACCGCCCTGTTTACACGTGTCC
ATTCAAGAACCACGTCGGCTGCGATAAGACATTCTATAGAAAAGACAAAT
TGACCAGACATTTATATTCACACTCGAAAGTCAAACCTTTCAAGTGTGAC
CAATGTGATAAATCGTTCGCCCGCACGGATAATTTGAGAGAACACATACG
CTCTCACACAGGAAACATCGAAACTCTATACACCATCAGTCACACCGGTC
AAGGTTCCGGTTCTCCGCAATTTCAAATCAGTCGGGCACAAGACACGATG
GTACGTAACGAACAACTACTACGTGAACAATTGGCACGTGAAGGTCTCAC
AACTCGAGAGGTTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTACAG
GACGCGATTCAACGCAAACGGCAGCCGCTGACGCAACCACAACGGAACGT
CTCCAAGAAGTCATAACAAGGCAACTGGCAGAATCGGCCGCAGCGACGCA
ACAGGGCCGTGAACTGGAAGAACCCACCATCTCTATGACGGTAGACCAAG
ACGGTAACATTACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAGGGA
GTCCTCCCAGGACAGCTAGCAGGACAATTACAATTCACGACGCTCTTGAA
TTCTGACATTATAGCGATCGGCGAGGACGTGATACGACAGAATCGGAACG
GTGTGCTACCAGCTATGTTTCAACAGAAATTTGGAAACTAGAAAGTTCGC
AAGGAGAATATCGAGACGACGGAGATTCCGTTAGATGGAGCGGTTGCCAT
AGCAGCAGGGTTGAACCCGATGATCCAATCAACGCTCATGCCCAGTCCCA
CGCAAAATGTGACGTCAGAACAACAACAAGCCTTTGTAGCAGCTGCTTCA
AGAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAAAAGGACAACCAGG
ACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCACAACGTAGAGAATG
CAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGAACCACTCATTCAA
CAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCCGCTTAGTCCGTGC
GGCCAATAATGTTAAGAAAGACCAAGGAAAGATGCAACCAAAGAAACACA
CAGTCACCCTTGTGACCAGTGCGAGCGGTCGTACGTCAACAAACAATCGC
TCATGCGTCACAAATTATCTCACTCTGAGAAAACACACAAATGTGATCAA
TGTTCGCGCGCATTCAAAACACCGCGTGAACTCNTCTCACTCTGAGAAAA
CACACAAATGTGATCAATGTTCACGCGCATTCAAAACACCGCGCGAACTT
AAATACCACGTCGAAGGAATGCACTCTTTATCACGTGATTTCGTTTGTGA
CGTTTGCCAAAAAGGATTTTCACGGCCGGAGAAATTGAAACGCCATCTGA
TGATCCACGCCCCAGACCGCCCTGTTTACACGTGTCCATTCAAGAACCAC
GTCGGCTGCGATAAGACATTCTATAGAAAAGACAAATTGACCAGACATTT
ATATTCACACTCGAAAGTCAAACCTTTCAAGTGTGACCAATGTGATAAAT
CGTTCGCCCGCACGGATAATTTGAGAGAACACATACGCTCTCACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040587XLOC_040587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064704-exon-scaffold_421-1575043694:147892..147966TCONS_00064704-exon-scaffold_421-1575043694:147892..147966Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:147102..147245TCONS_00064704-exon-scaffold_421-1575043694:147102..147245Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:145218..145764TCONS_00064704-exon-scaffold_421-1575043694:145218..145764Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:144681..144907TCONS_00064704-exon-scaffold_421-1575043694:144681..144907Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:144198..144360TCONS_00064704-exon-scaffold_421-1575043694:144198..144360Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:143300..143852TCONS_00064704-exon-scaffold_421-1575043694:143300..143852Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1575043694:138539..138601TCONS_00064704-exon-scaffold_421-1575043694:138539..138601Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:147892..147966TCONS_00064704-exon-scaffold_421-1510915933:147892..147966Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:147102..147245TCONS_00064704-exon-scaffold_421-1510915933:147102..147245Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:145218..145764TCONS_00064704-exon-scaffold_421-1510915933:145218..145764Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:144681..144907TCONS_00064704-exon-scaffold_421-1510915933:144681..144907Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:144198..144360TCONS_00064704-exon-scaffold_421-1510915933:144198..144360Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:143300..143852TCONS_00064704-exon-scaffold_421-1510915933:143300..143852Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1510915933:138539..138601TCONS_00064704-exon-scaffold_421-1510915933:138539..138601Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:147892..147966TCONS_00064704-exon-scaffold_421-1491911889:147892..147966Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:147102..147245TCONS_00064704-exon-scaffold_421-1491911889:147102..147245Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:145218..145764TCONS_00064704-exon-scaffold_421-1491911889:145218..145764Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:144681..144907TCONS_00064704-exon-scaffold_421-1491911889:144681..144907Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:144198..144360TCONS_00064704-exon-scaffold_421-1491911889:144198..144360Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:143300..143852TCONS_00064704-exon-scaffold_421-1491911889:143300..143852Clytia hemisphaericaexon
TCONS_00064704-exon-scaffold_421-1491911889:138539..138601TCONS_00064704-exon-scaffold_421-1491911889:138539..138601Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064704-proteinTCONS_00064704-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:138539..147966 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.630985	0	0	1.25501	0	1.38315	2.39562	1.2019e-05	0.59431	1.91192	0.00204711	0.694667	1.1186	0	1.02671	1.89671	0.899608	0	0	4.20407e-06	0	0	0.0817312	0.471363	1.55927e-08	0	0	0	0.1955
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00064704 vs. Swiss-Prot (Human)
Match: ZN341 (Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.138e-30
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:  424 KCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPEKLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFKCDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKG 804
            KC  C + F+    LK H   +HS  + + C VC+  F+R +KLKRH++IH P +  Y CPF  H GC K F R DKL  H+ SHS +K  KC  C KSF+R  +L EH R+HTG +++ C  C KG
Sbjct:  595 KCQVCKKFFRREHYLKLHAH-IHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFK-KYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKG 719

HSP 2 Score: 32.3426 bits (72), Expect = 1.138e-30
Identity = 29/113 (25.66%), Postives = 47/113 (41.59%), Query Frame = 3 
Query:  111 SSHRCPICLLLFPSRMTMIEHKRKHT--KVHKCKI--CNEGFYTEDRLEKHAT--KETHSHPCDQCERSYVNKQSLMRHKLSHS----------EKTHKCDQCSRAFKTPREL 401
            SS+ C  C   F +   +  H  +H   +V+KC +  C + F   D   +H    +E  S+ C  C + + +   L  H+ SHS             +KC +C   + TP  L
Sbjct:  443 SSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDNAVYKCVKCVNKYSTPEAL 555
The following BLAST results are available for this feature:
BLAST of TCONS_00064704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3411.138e-3045.67Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 ... [more]
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